Browse > Article

ISSR Markers of Authentication for Korean and Chinese Platycodon Grandiflorum  

Shin, Soon-Shik (Department of Formula Science, College of Oriental Medicine & Research Institute of Oriental Medicine, Dong-eui University)
Choi, Ju-Soo (Department of Molecular Biology, Dong-eui University)
Huh, Man-Kyu (Department of Molecular Biology, Dong-eui University)
Publication Information
Journal of Physiology & Pathology in Korean Medicine / v.23, no.1, 2009 , pp. 214-218 More about this Journal
Abstract
Platycodon grandiflorum is a long-lived herbaceous and one of the very important herbal medicine and foods. P. grandiflorum is called do-ra-ji in Korea. Inter-simple sequence repeats (ISSR) markers were performed in order to analyse the phenetic relationships of four accessions of P. grandiflorum. Wild groups had higher expected diversity, 0.164 for Korean and 0.157 for Chinese accessions than those of cultivated groups, 0.079 for Korea and 0.059 for China. The total genetic diversity in P. grandiflorum was 0.268 across species and the value was lower than average values for species with similar life history traits. The patchy distribution and domestication are proposed as possible factors contributing to low genetic diversity. An assessment of the proportion of diversity within species, HAccession/HSpecies, indicated that about 57.1% the total genetic diversity was among species. Thus, the majority of genetic variation (42.9%) resided within accessions. The estimated Nm (the number of migrants per generation) was very low among four accessions (mean Nm = 0.376). The low estimate of Nm indicated that gene flow was not extensive among four accessions. ISSR01-02 locus can be recognized as an unique locus of Korean groups (wild and cultivated accessions). Thus the locus can be used to distinguish Korean accessions from Chinese accessions. ISSR04-06 locus was found specific to Chinese groups (wild and cultivated accessions) and was not shown in Korean accessions. Although the size of sampling was not large enough for P. grandiflorum, the analyses of ISSRs will certainly provide an enhanced view on the phylogeny of accessions.
Keywords
platycodon grandiflorum; Inter-simple sequence repeats;
Citations & Related Records
연도 인용수 순위
  • Reference
1 He, Z.D., Qiao, C.F., Han, Q.B., Wang, Y.W., Ye, C., Xu, H.X. New triterpenoid saponins from the roots of Platycodon grandiflorum. Tetrahedron 61: 2211–2215, 2005   DOI   ScienceOn
2 Doebley, J. Isozymic evidence and the evolution of crop plants, In: D.E. Soltis and P.S. Soltis (eds.). Isozymes in plant biology. Dioscorides Press, Portland, Oreg, USA, pp 46-72, 1989
3 Nei, M. Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. USA. 701: 3321-3323, 1973
4 Liu, B., Wendel, J.F. Intersimple sequence repeat (ISSR) polymorphisms as a genetic marker system in cotton. Mol. Ecol. Notes 1: 205-208, 2001   DOI
5 Wie, H.J., Zhao, H.L., Chang, J.H., Kim, Y.S., Hwang, I.K., Ji, G.E. Enzymatic modification of saponins from Platycodon grandiflorum with Aspergillus niger. J. Agric. Food Chem. 55: 8908-8913, 2007   DOI   ScienceOn
6 Qian, W., Ge, S., Hong, D.Y. Genetic variation within and among populations of a wild rice Oryza granulata from China detected by RAPD and ISSR markers. Theor. Appl. Genet. 102: 440-449, 2001   DOI   ScienceOn
7 Lee, J.Y., Yoon, J.W., Kim, C.T., Lim, S.T. Antioxidant activity of phenylpropanoloid esters isolated and identified from Platycodon grandiflorum A. DC. Phytochemistry, 65: 3033-3039, 2004   DOI   ScienceOn
8 Karron, J.D. A comparison of levels of genetic polymorphic and self-compatibility in geographically restricted and widespread plant congeners. Evol. Ecol. 1: 47-58, 1987   DOI
9 Iruela, M., Rubio, J., Cubero, J.I., Gil, J., Mill, T. Phylogenetic analysis in the genus Cicer and cultivated chickpea using RAPD and ISSR markers. Theor. Appl. Genet. 104: 643-651, 2002   DOI   ScienceOn
10 Bornet, B., Branchard, M. Nonanchored Inter simple sequence repeat (ISSR) markers: reproducible and specific tools for genome fingerprinting. Plant Mol. Biol. Rep. 19: 209-215, 2001   DOI   ScienceOn
11 Saitou, N., Nei, M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425, 1987   PUBMED
12 Kim, K.S., Seo, E.K., Lee, Y.C., Lee, T.K., Cho, Y.W., Ezaki, O., Kim, C.H. Effects of dietary Platycodon grandiflorum on the improvement of insulin resistance in obese Zuker rats. J. Nutrition Biochem. 11: 420-424, 2000   DOI   ScienceOn
13 Zheng, J., He, J., Ji, B., Li, Y., Zhang, X. Antihyperglycemic effects of Platycodon grandiflorum (Jacq.) A. DC. extract on streptozotocin-induced diabetic mice. Plant Foods for Human Nutrition 62: 7-11, 2007   DOI   ScienceOn
14 Godwin, I.D., Aiken, E.A.B., Smith, L.W. Application of inter simple sequence repeat (ISSR) markers to plant genetics. Electrophoresis 18: 1524-1528, 1997   DOI   ScienceOn
15 Kim, K.S., Ezaki, O., Ikemoto, S., Ikakura, H. Effects of Platycodon grandiflorum feeding on serum and liver lipid concentrations in rats with diets-induced hyperlipididemia. J. Nutritional Science and Vitaminology 41: 485-491, 1995   DOI   PUBMED   ScienceOn
16 Tsumura, Y., Ohba, K., Strauss, S.H. Diversity and inheritance of inter-simple sequence repeat polymorphisms in douglas-fir (Pseudotsuga menziesii) and sugi (Cryptonmeria japonica). Theor. Appl. Genet. 92: 40-45, 1996   DOI   ScienceOn
17 Yeh, F.C., Yang, R.C., Boyle, T. POPGENE Version 1.31, Microsoft Windows-based Freeware for Population Genetic Analysis. University of Alberta, Alberta, 1999
18 Felsenstein, J. PHYLIP (Phylogeny Inference Package) Version 3.5s. Distributed by the Author. Department of Genetics, Univ. of Washington, Seattle, 1993
19 Kim, Y.S., Kim, J.S., Choi, S.U., Kim, J.S., Lee, H.S., Roh, S.H. Isolation of a new saponin and cytotoxic effect of saponins from the root of Platycodon grandiflorum on human tumor cell lines. Planta Medica 71: 566-568, 2005   DOI   ScienceOn
20 Esselman, E., Jiangquiang, J.L., Crawford, D.J., Winduss, J.L., Wolfe, A.D. Clonal diversity in the rare Calamagrosis porteri ssp. insperata (Poaceae): comparative results for allozymes and random amplified polymorphic DNA (RAPD) and their simple sequence repeat (ISSR) markers. Mol. Ecol. 8: 443-451, 1999   DOI   ScienceOn