Discrimination of the commercial Korean native chicken population using microsatellite markers |
Choi, Nu Ri
(Department of Animal Science and Biotechnology, College of Agriculture and Life Sciences, Chungnam National University)
Seo, Dong Won (Department of Animal Science and Biotechnology, College of Agriculture and Life Sciences, Chungnam National University) Jemaa, Slim Ben (Department of Animal Science and Biotechnology, College of Agriculture and Life Sciences, Chungnam National University) Sultana, Hasina (Department of Animal Science and Biotechnology, College of Agriculture and Life Sciences, Chungnam National University) Heo, Kang Nyeong (Poultry Science Division, National Institute of Animal Science, RDA) Jo, Cheorun (Department of Agricultural Biotechnology, Center for Food and Bioconvergence, and Research Institute for Agriculture and Life Science, Seoul National University) Lee, Jun Heon (Department of Animal Science and Biotechnology, College of Agriculture and Life Sciences, Chungnam National University) |
1 | Ministry of Agriculture, Food and Rural Affairs. Primary statistics of Ministry of Agriculture, Food and Rural Affairs. 2014, Korea |
2 | Jaturasitha S, Srikanchai T, Kreuzer M, Wicke M. Differences in carcass and meat characteristics between chicken indigenous to northern Thailand (Black-boned and Thai native) and imported extensive breeds (Bresse and Rhode Island Red). Poult Sci. 2008;87:160-9. DOI |
3 | Heo KN, Choo HJ, Seo BY, Park MN, Jung KC, Hwangbo J, et al. Investigation of TYR and MC1R polymorphisms in Korean native chickens and the commercial chickens. CNU J Agric Sci. 2011;38:465-71. |
4 | Park MN, Hong EC, Kang BS, Kim HK, Kim JH, Na SH, et al. Chemical composition and meat quality of crossbred Korean native chickens (KNC). Korean J Poult Sci. 2010;37:415-21. DOI |
5 | Jung YK, Jeon HJ, Jung S, Choe JH, Lee HJ, Heo KN, et al. Comparison of quality traits of thigh meat from Korean native chickens and broilers. Korean J Food Sci Ani resour. 2011;31:684-92. DOI |
6 | Park MN, Kim TH, Lee HJ, Choi JA, Heo KN, Kim CD, et al. Genetic variatiion of chicken MC1R gene and associations with feather color of Korean native chicken (KNC) 'Woorimatdag'. Korean J Poult Sci. 2013;40:139-45. DOI |
7 | Hillel J, Groenen MA, Tixier-Boichard M, Korol AB, David L, Kirzhner VM, et al. Biodiversity of 52 chicken populations assessed by microsatellite typing of DNA pools. Genet Sel Evo. 2003;35:533-58. DOI |
8 | Lim HT, Seo BY, Jung EJ, Yoo CK, Yoon DH, Jeon JT. A comparison of discriminating powers between 14 microsatellite markers and 60 SNP markers applicable to the cattle identification test. J Anim Sci Technol. 2009;51:353-60. DOI |
9 | Lim HT, Seo BY, Jung EJ, Yoo CK, Zhong T, Cho IC, et al. Estabilishment of a microsatellite marker set for individual, pork brand and product origin identification in pigs. J Anim Sci Technol. 2009;51:201-6. DOI |
10 | Cheng HH, Crittenden LB. Microsatellite markers for genetic mapping in the chicken. Poult Sci. 1994;73:539-46. DOI |
11 | Crooijmans RP, Groen AF, Van Kampen AJ, Van der Beek S, Van der Poel JJ, Groenen MA. Microsatellite polymorphism in commercial broiler and layer lines estimated using pooled blood samples. Poult Sci. 1996;75:904-9. DOI |
12 | Abasht B, Dekkers JCM, Lamont SJ. Review of quantitative trait loci identified in the chicken. Poult Sci. 2006;85:2079-96. DOI |
13 | Food and Agriculture Organization of the United Nations. Molecular genetic characterization of animal genetic resources. Rome: FAO Animal production and Health Guidelines; 2011. No. 9: 84-85. |
14 | Seo DW, Hoque MR, Choi NR, Sultana H, Park HB, Heo KN, et al. Discrimination of Korean native chicken lines using fifteen selected Microsatellite markers. Asian-Aust J Anim Sci. 2013;26:316-22. DOI |
15 | Marshall T, Slate J, Kruuk L, Pemberton J. Statistical confidence for likelihood‐based paternity inference in natural populations. Mol Ecol. 1998;7:639-55. DOI |
16 | Ayres KL, Overall AD. api‐calc 1.0: a computer program for calculating the average probability of identity allowing for substructure, inbreeding and the presence of close relatives. Mol Ecol Notes. 2004;4:315-8. DOI |
17 | Pritchard JK, Stephens M, Donnelly P. Inference of population structure using multilocus genotype data. Genetics. 2000;155:945-59. |
18 | Jombart T, Collins C, Solymos P, Ahmed I, Calboli F, Cori A. Package 'adegenet'. ftp://mint.c3sl.ufpr.br/CRAN/web/packages/adegenet/adegenet.pdf. Accessed June 7, 2014. |
19 | Jombart T. adegenet: a R package for the multivariate analysis of genetic markers. Bioinformatics. 2008;24:1403-5. DOI |
20 | Jombart T, Devillard S, Balloux F. Discriminant analysis of principal components: a new method for the analysis of genetically structured populations. BMC Genetics. 2010;11:94. |
21 | Nei M, Tajima F, Tateno Y. Accuracy of estimated phylogenetic trees from molecular data. J Mol Evol. 1983;19:153-70. DOI |
22 | Liu K, Muse SV. PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics. 2005;21:2128-9. DOI |
23 | Paradis E, Claude J, Strimmer K. APE: analyses of phylogenetics and evolution in R language. Bioinformatics. 2004;20:289-90. DOI |
24 | Huson DH, Bryant D. Application of phylogenetic networks in evolutionary studies. Mol Biol Evol. 2006;23:254-67. DOI |
25 | Suh S, Cho CY, Kim JH, Choi SB, Kim YS, Kim H, et al. Analysis of genetic characteristics and probability of individual discrimination in Korean indigenous chicken brands by microsatellite marker. J Anim Sci Technol. 2013;55:185-94. DOI |
26 | Botstein D, White RL, Skolnik M, Davis RW. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet. 1980;32:314-31. |
27 | Evanno G, Regnaut S, Goudet J. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol. 2005;14:2611-20. DOI |
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