Development and Characterization, and Application of Ten Polymorphic Microsatellite Markers in the Crested Ibis Nipponia nippon from South Korea |
Choi, Eun Hwa
(Department of Biology Education, Teachers College & Institute for Phylogenomics and Evolution, Kyungpook National University)
Kim, Gyeongmin (Department of Biology Education, Teachers College & Institute for Phylogenomics and Evolution, Kyungpook National University) Baek, Su Youn (Department of Biology Education, Teachers College & Institute for Phylogenomics and Evolution, Kyungpook National University) Kim, Sung Jin (Changnyeong County Upo Wetland Management Center) Hwang, Jihye (Department of Biology Education, Teachers College & Institute for Phylogenomics and Evolution, Kyungpook National University) Jun, Jumin (Animal Resources Division, National Institute of Biological Resources) Jang, Kuem Hee (Research Center for Endangered Species, National Institute of Ecology) Ryu, Shi Hyun (Freshwater Biodiversity Research Division, Nakdonggang National Institute of Biological Resources) Hwang, Ui Wook (Department of Biology Education, Teachers College & Institute for Phylogenomics and Evolution, Kyungpook National University) |
1 | Pritchard JK, Stephens M, Donnelly P, 2000. Inference of population structure using multilocus genotype data. Genetics, 155:945-959. DOI |
2 | Raymond M, Rousset F, 1995. GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity, 86:248-249. https://doi.org/10.1093/oxfordjournals.jhered.a111573 DOI |
3 | Taniguchi Y, Matsuda H, Yamada T, Sugiyama T, Homma K, Kaneko Y, Yamagishi S, Iwaisaki H, 2013. Genome-wide SNP and STR discovery in the Japanese crested ibis and genetic diversity among founders of the Japanese population. PLoS ONE, 8:e72781. https://doi.org/10.1371/journal.pone.0072781 DOI |
4 | Tsubono K, Taniguchi Y, Matsuda H, Yamada T, Sugiyama T, Homma K, Kaneko Y, Yamagishi S, Iwaisaki H, 2014. Identification of novel genetic markers and evaluation of genetic structure in a population of Japanese crested ibis. Animal Science Journal, 85:356-364. https://doi.org/10.1111/asj.12155 DOI |
5 | Untergasser A, Cutcutache I, Koressaar T, Ye J, Faircloth BC, Remm M, Rozen SG, 2012. Primer3: new capabilities and interfaces. Nucleic Acids Research, 40:e115. https://doi.org/10.1093/nar/gks596 DOI |
6 | Urano K, Tsubono K, Taniguchi Y, Matsuda H, Yamada T, Sugiyama T, Homma K, Kaneko Y, Yamagishi S, Iwaisaki H, 2013. Genetic diversity and structure in the Sado captive population of the Japanese crested ibis. Zoological Science, 30:432-438. https://doi.org/10.2108/zsj.30.432 DOI |
7 | Yamashina Y, 1975. The feeding of Japanese crested ibis. In: Endangered birds (Ed., Templ SA). University of Wisconsin Press, Madison, WI, pp. 161-164. |
8 | Yamashina Y, Nakanishi G, 1983. Nipponia nippon. Newton Books, Tokyo, pp. 1-301 |
9 | Zhang DX, Hewitt GM, 2003. Nuclear DNA analyses in genetic studies of populations: practice, problems and prospects. Molecular Ecology, 12:563-584. https://doi.org/10.1046/j.1365-294X.2003.01773.x DOI |
10 | Botstein D, White RL, Skolnick M, Davis RW, 1980. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. American Journal Human Genetics, 32:314-331. |
11 | Excoffier L, Lischer HEL, 2010. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources, 10:564-567. https://doi.org/10.1111/j.1755-0998.2010.02847.x DOI |
12 | Faircloth BC, 2008. Msatcommander: detection of microsatellite repeat arrays and automated, locus-specific primer design. Molecular Ecology Resources, 8:92-94. https://doi.org/10.1111/j.1471-8286.2007.01884.x DOI |
13 | Goudet J, 1995. FSTAT (version 1.2): a computer program to calculate F-statistics. Journal of Heredity, 86:485-486. https://doi.org/10.1093/oxfordjournals.jhered.a111627 DOI |
14 | He LP, Wan QH, Fang SG, Xi YM, 2006. Development of novel microsatellite loci and assessment of genetic diversity in the endangered crested ibis, Nipponia nippon. Conservation Genetics, 7:157-160. https://doi.org/10.1007/s10592-005-6790-0 DOI |
15 |
IUCN, 2018. The IUCN Red List of Threatened Species. Version 2018-1 [Internet]. Accessed 26 Feb 2020, |
16 | Kim KA, Cha JS, Park SY, Kim KM, Park HC, 2012. The improved polymerase chain reaction method applied for sex identification of crested ibis, Nipponia nippon. Advances in Life Sciences, 2:82-84. https://doi.org/10.5923/j.als.20120204.01 DOI |
17 | Ji YJ, Liu YD, Ding CQ, Zhang DX, 2004. Eight polymorphic microsatellite loci for the critically endangered crested ibis, Nipponia nippon (Ciconiiformes: Threskiornithidae). Molecular Ecology Notes, 4:615-617. https://doi.org/10.1111/j.1471-8286.2004.00754.x DOI |
18 | Kim DH, Kim YS, Seo JH, Kim SJ, Kong HS, 2018. Genetic analysis of endangered species Crested Ibis (Nipponia nippon) microsatellite markers. Korean Journal of Ornithology, 25:77-81. https://doi.org/10.30980/KJO.2018.12.25.2.77 DOI |
19 | Kim G, Jeong KC, Choi EH, Ryu SH, Lim YJ, Jun J, Lee Y-S, Hwang UW. 2019. The complete mitochondrial genome of an Asian crested ibis Nipponia nippon (Pelecaniformes, Threskiornithidae) from South Korea. Mitochondral DNA Part B, 4:3707-3708. https://doi.org/10.1080/23802359.2019.1680321 DOI |
20 | Kim SJ, 2019. Reintroduction of crested ibis in South Korea. In: The 3rd International Symposium for Asian Crested Ibis in China, Japan and Korea: 2019 May 23; Changnyeong, Korea. p. 126. |
21 | Lande R, 1988. Genetics and demography in biological conservation. Science, 241:1455-1460. https://doi.org/10.1126/science.3420403 DOI |
22 | Li X, Tian H, Li D, 2009. Why the crested ibis declined in the middle twentieth century. Biodiversity and Conservation, 18:2165-2172. https://doi.org/10.1007/s10531-009-9580-z DOI |
23 | Peakall R, Smouse PE, 2012. GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research-an update. Bioinformatics, 28:2537-2539. https://doi.org/10.1093/bioinformatics/bts460 DOI |
24 | Liu K, Muse SV, 2005. PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics, 21:2128-2129. https://doi.org/10.1093/bioinformatics/bti282 DOI |