Browse > Article

Application of Geo-Statistic and Data-Mining for Determining Sampling Number and Interval for Monitoring Microbial Diversity in Tidal Mudflat  

Yang, Ji-Hoon (School of Civil and Environmental Engineering, Yonsei University)
Lee, Jae-Jin (School of Civil and Environmental Engineering, Yonsei University)
Yoo, Keun-Je (School of Civil and Environmental Engineering, Yonsei University)
Park, Joon-Hong (School of Civil and Environmental Engineering, Yonsei University)
Publication Information
Abstract
Tidal mudflat is a reservoir for diverse microbial resources. Microbial diversity in tidal mudflat sediment can be easily influenced by various human activities. It is necessary to take representative samples to monitor microbial diversity in tidal mudflat sediments. In this study, we analyzed the microbial diversity and chemical characteristics of vegetation and non-vegetation tidal mudflat regions in the Kangwha tidal mudflat using geo-statistics and data-mining. According to the geo-statistical analysis, most correlation range values for the vegetation region were smaller than those for the non-vegetation region, which suggested that the shorter number and interval of sampling are required for the vegetation tidal mudflat environment due to its higher degree of chemical and biological complexity and heterogeneity. The data-mining analysis suggested that the organic content and nitrate were the major environmental factors influencing microbial diversity in the vegetation region while pH and sulfate were the major influencing factors in the non-vegetation region. Using the geo-statistical and data-mining integration approach, we proposed a guideline for determining the sampling interval and number to monitor microbial diversity in tidal mudflat.
Keywords
Tidal Mudflat; Microbial Diversity; Number of Sample; Geo-statistic; Data-mining;
Citations & Related Records
Times Cited By KSCI : 4  (Citation Analysis)
연도 인용수 순위
1 Grayston, S. J., Wang, S., Campbell, C. D. and Edwards, A. C., "Selective Influence of Plant Species On Microbial Diversity in the Rhizosphere," Soil Biol. Biochem., 30(3), 369-378(1998).   DOI   ScienceOn
2 Kim, K. and Park, J., "A survey of applications of artificial intelligence algorithms in Eco-environmental modeling," Environ. Engineer. Res., 14(2), 102-110(2009).   과학기술학회마을   DOI   ScienceOn
3 Franklin, R. B. and Mills, A. L., "Multi-scale variation in spatial heterogeneity for microbial community structure in an eastern Virginia agricultural field," FEMS Microbiol. Ecol., 44(3), 335-346(2003).   DOI   ScienceOn
4 박노욱, 지광훈, 권병두, "지구통계학적 시뮬레이션을 이용한 원격탐사 화상 분류 결과의 공간적 불확실성 분포의 추정," 2004 GIS/RS 공동 춘계학술대회 논문집, 한국지형공간정보학회, 서울, pp. 463-468(2004).
5 Lide, D. R., CRC Handbook of Chemistry and Physics, 90st Edition, ed, CRC Press Inc., Boca Raton, FL, pp. 5-4(2009).
6 Shim, B. O., Chung, S. Y., Kang, D. H., Kim, G. B. and Park, H. Y., "Geostatistical Analysis for the Groundwater Database of the Youngsan and Sumjin River Basins," J. Engineer. Geol., 10(2), 131-142(2000).
7 Berry, M. J. and Linoff, G. S., Data Mining Techniques, WILEY publishing Inc., Indiana, USA pp. 165-209(2004).
8 Pal, M. and Mather, P. M., "An assessment of the effectiveness of decision tree methods for land cover classification," Remote Sensing of Environ., 86(4), 554-565(2003).   DOI   ScienceOn
9 강현철, 한상태, 최종후, 이성건, 김은석, 엄익현, 김미경, "고객관계관리(CRM)를 위한 데이터마이닝 방법론," 자유아카데미, 경기, pp. 75-82(2006).
10 환경부고시 제 2001-202호 "토양환경평가 지침," 환경부, 대한민국, pp. 14(2001).
11 Rocha, C. and Cabbal, A. P., "The influence of tidal action on porewater nitrate concentration and dynamics in intertidal sediments of the Sado estuary," Estuaties and Coasts, 21(4A), 635-645(1998).   DOI
12 Shin, W. S., Pardue, J. H. and Jackson, A., "Oxygen demand and sulfate reduction in petroleum hydrocarbon contaminated salt marsh soils," Water Res., 34(4), 1345-1353 (2000).   DOI   ScienceOn
13 Sun, G. and Austin, D., "Completely autotrophic nitrogenremoval over nitrite in lab-scale constructed wetlands : evidence from a mass balance study," Chemosphere, 68(6), 1120-1128(2007).   DOI   ScienceOn
14 Junkins, R., Kelaher, B. and Levinton, J., "Contributions of adult oligochaete emigration and immigration in a dynamic soft-sediment community," J. Exp. Mar. Biol. Ecol., 330(1), 208-220(2006).   DOI   ScienceOn
15 Ekschmitt, K. and Griffiths, B. S., "Soil biodiversity and its implications for ecosystem functioning in a heterogeneous and variable environment," Appl. Soil Ecol., 10(3), 201-215(1998).   DOI   ScienceOn
16 Torsvik, V. and Overas, L., "Microbial diversity and function in soil : from genes to ecosystems," Curr. Opin. Microbiol., 5(3), 240-245(2002).
17 Breiman, L., Friedman, J. H., Olshen, R. A. and Stone, C. J., "Classification and regression trees," Chapman and Hall/CRC, U.S.A, pp. 10-37(1984).
18 Mitchell, R. J., Hester, A. J., Campbell, C. D., Chapman, S. J., Cameron, C. M., Hewison, R. L., Potts, J. M., "Is vegetation composition or soil chemistry the best predictor of the soil microbial community?," Plant Soil, 333(1), 417-430(2010).   DOI
19 Fierer, N. and Jackson, R. B., "The diversity and biogeography of soil bacterial communities," PNAS, 103(3), 626-631(2006).   DOI   ScienceOn
20 Stevens, H., Brinkhoff, T., Rink, B., Vollmers, J. and Simon, M., "Diversity and abundance of Gram positive bacteria in a tidal flat ecosystem," Environ. Microbiol., 9(7), 1810-1822 (2007).   DOI   ScienceOn
21 Haynes, K., Hofmann, T. A., Smith, C. J., Ball, A. S., Underwood, G. J. C. and Osborn, A. M., "Diatom-derived carbohydrates as drivers of bacterial community composition in estuarine sediments," Appl. Environ. Microbiol., ASM, On line published(2007).
22 Wilms, R., Sass, H., Kopke, B., Koster, J., Cypionka, H. and Engelen, B., "Specific Bacterial, Archaeal, and Eukaryotic Communities in Tidal-Flat Sediments along a Vertical Profile of Several Meters," Appl. Environ. Microbiol., 72(4), 2756-2764(2006).   DOI   ScienceOn
23 Kim, B., Kim, B. K., Lee, J., Kim, M., Lim, Y. W. and Chun, J., "Rapid phylogenetic dissection of prokaryotic community structure in tidal flat using pyrosequencing," J. Microbiol., 46(4), 357-363(2008).   DOI   ScienceOn
24 Miletto, M., Loch, R., Antheunisse, A. M., Bodelier, P. L. E. and Laanbroek, H. J., "Response of the Sulfate-Reducing Community to the Re-establishment of Estuarine Conditions in Two Contrasting Soils : a Mesocosm Approach," Microb. Ecol., 59(1), 109-120(2010).   DOI   ScienceOn
25 정승우, 안윤주, "토양위해성평가를 위한 합리적 토양조사 방안 연구," 한국지하수토양환경학회지, 12(1), 36-43(2007).   과학기술학회마을
26 Gibson, G. R., Bowman, M. L., Gerritsen, J. and Snyder, B. D., "Estuarine and Coastal Marine Water : Bioassessment and Biocriteria Technical Guidance," EPA 822-B-00-024, U.S. Environmental Protection Agency, Office of Water, Washington, DC, pp. 20-31(2000).
27 Crosby, L. D. and Criddle, C. S., "Understanding Bias in Microbial Community Analysis Techniques due to rrn Operon Copy Number Heterogeneity," BioTechniques, 34(4), 2-9(2003).
28 최종근, 지구통계학. 시그마프레스, 서울, pp. 136-161(2007).
29 Kim, B., Oh, H., Kang, H., Park, S. and Chun, J., "Remarkable bacterial diversity in the tidal flat sediment as revealed by 16S rDNA analysis," Microb. Biotechnol., 14(1), 205-211(2004).
30 전승수, 우한준, 제종길, 신상호, 김종관, "갯벌총서 #1 우리나라 갯벌 -자연 생태의 특성," 해양수산부, 시그마프레스, 서울, pp. 6-11(2005).
31 Horowitz. N. H., "The Origins of Molecular Genetics- One Gene, One Enzyme," BioEssays, 3(1), 37-39(1985).   DOI
32 Kim, B., Oh, H., Kang, H. and Chun, J., "Archaeal Diversity in Tidal Flat Sediment as Revealed by 16S rDNA Analysis," J. Microbiol., 43(2), 144-151(2005).   과학기술학회마을
33 Lee, J., Nishijima, W., Mukai, T., Takimoto, K., Seiki, T., Hiraoka, K. and Okada, M., "Factors to Determine the Functions and Structures in Natural and Constructed Tidal Flats," Water Res., 21(9), 2601-2606(1998).