Comparison of Non-amplified and Amplified DNA Preparation Methods for Array-comparative Gnomic Hybridization Analysis
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Joo, Hong-Jin
(Department of Microbiology, The Catholic University of Korea)
Jung, Seung-Hyun (Department of Microbiology, The Catholic University of Korea) Yim, Seon-Hee (Integrated Research Center for Genome Polymorphism, The Catholic University of Korea) Kim, Tae-Min (Department of Microbiology, The Catholic University of Korea) Xu, Hai-Dong (Department of Microbiology, The Catholic University of Korea) Shin, Seung-Hun (Department of Microbiology, The Catholic University of Korea) Kim, Mi-Young (Department of Microbiology, The Catholic University of Korea) Kang, Hyun-Mi (Department of Microbiology, The Catholic University of Korea) Chung, Yeun-Jun (Department of Microbiology, The Catholic University of Korea) |
1 | Kim, M. Y. et al. Recurrent genomic alterations with impact on survival in colorectal cancer identified by genome-wide array comparative genomic hybridization. Gastroenterology 131:1913-1924 (2006) DOI ScienceOn |
2 | Kang, H. M. et al. DNA copy number alterations and expression of relevant genes in mouse thymic lymphomas induced by gamma-irradiation and N-methyl- N-nitrosourea. Cancer Genet Cytogenet 166:27-35 (2006) DOI ScienceOn |
3 | Dean, F. B. et al. Comprehensive human genome amplification using multiple displacement amplification. Proc Natl Acad Sci USA 99:5261-5266 (2002) |
4 | Ng, G., Roberts, I. & Coleman, N. Evaluation of 3 methods of whole-genome amplification for subsequent metaphase comparative genomic hybridization. Diagn Mol Pathol 14:203-212 (2005) DOI ScienceOn |
5 | Fiegler, H. et al. DNA microarrays for comparative genomic hybridization based on DOP-PCR amplification of BAC and PAC clones. Genes Chromosomes Cancer 36:361-374 (2003) DOI ScienceOn |
6 | Sambrook, J. & Russel, D. W. Molecular cloning: A laboratory manual, 3rd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York (2001) |
7 | Kim, S. Y. et al. ArrayCyGHt: a web application for analysis and visualization of arrayCGH data. Bioinformatics 21:2554-2555 (2005) DOI ScienceOn |
8 | Hackett, C. S. et al. Genome-wide array CGH analysis of murine neuroblastoma reveals distinct genomic aberrations which parallel those in human tumors. Cancer Res 63:5266-5273 (2003) |
9 | Cardoso, J. et al. Genomic profiling by DNA amplification of laser capture microdissected tissues and array CGH. Nucleic Acids Res 32:e146 (2004) DOI ScienceOn |
10 | Chung, Y. J. et al. A whole-genome mouse BAC microarray with 1-Mb resolution for analysis of DNA copy number changes by array comparative genomic hybridization. Genome Res 14:188-196 (2004) DOI ScienceOn |
11 | Johnson, N. A. et al. Application of array CGH on archival formalin-fixed paraffin-embedded tissues including small numbers of microdissected cells. Lab Invest 86:968-978 (2006) DOI ScienceOn |
12 | Massion, P. P. et al. Genomic copy number analysis of non-small cell lung cancer using array comparative genomic hybridization: implications of the phosphatidylinositol 3-kinase pathway. Cancer Res 62:3636-3640 (2002) |
13 | Kim, T. M. et al. Genome-wide screening of genomic alterations and their clinicopathologic implications in non-small cell lung cancers. Clin Cancer Res 11:8235-8242 (2005) DOI ScienceOn |
14 | Shibata, T. et al. Genetic classification of lung adenocarcinoma based on array-based comparative genomic hybridization analysis: its association with clinicopathologic features. Clin Cancer Res 11:6177-6185 (2005) DOI ScienceOn |
15 | Albertson, D. G. & Pinkel, D. Genomic microarrays in human genetic disease and cancer. Hum Mol Genet 12:R145-152 (2003) DOI ScienceOn |
16 | Garnis, C., Coe, B. P., Lam, S. L., MacAulay, C. & Lam, W. L. High-resolution array CGH increases heterogeneity tolerance in the analysis of clinical samples. Genomics 85:790-793 (2005) DOI ScienceOn |
17 | Dean, F. B., Nelson, J. R., Giesler, T. L. & Lasken, R. S. Rapid amplification of plasmid and phage DNA using Phi29 DNA polymerase and multiply-primed rolling circle amplification. Genome Res 11:1095-1099 (2001) DOI ScienceOn |
18 | Hosono, S. et al. Unbiased whole genome amplification directly from clinical samples. Genome Res 13: 954-964 (2003) DOI ScienceOn |
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