Identifying literature-based significant genes and discovering novel drug indications on PPI network |
Park, Minseok
(Dept. of Computer Engineering, Gachon University)
Jang, Giup (Dept. of Computer Engineering, Gachon University) Lee, Taekeon (Dept. of Computer Engineering, Gachon University) Yoon, Youngmi (Dept. of Computer Engineering, Gachon University) |
1 | Oprea, T. I., and J. Mestres. "Drug repurposing: far beyond new targets for old drugs." The AAPPS journal Vol.14, No. 4, pp.759-763, Jul. 2012 DOI |
2 | Liu, Zhichao, et al. "In silico drug repositioning-what we need to know" Drug discovery today, Vol.18, No. 3, pp. 110-115, Feb. 2013. DOI |
3 | Andronis, Christos, et al. "Literature mining, ontologies and information visualization for drug repurposing" Briefings in bioinformatics, Vol.12, No. 4, pp. 357-368, Jul. 2011. DOI |
4 | Jang et al. "Novel Drug Similarity Measuring Method based on Text Mining for Predicting Similar Drugs." Journal of KIIT, Vol.4, No. 7, pp. 127-137, Jul. 2016. |
5 | Wu, Zikai, Yong Wang, and Luonan Chen. "Network-based drug repositioning" Molecular BioSystems, Vol.9, No. 6, pp. 1268-1281, Sep. 2013. DOI |
6 | Cheng, Feixiong, et al. "Prediction of drug-target interactions and drug repositioning via network-based inference." PLoS Comput Biol Vol.8, No. 5, pp. ppe1002503, May, 2012. DOI |
7 | Canese, Kathi, and Sarah Weis. "PubMed: The bibliographic database" The NCBI Handbook. 2013. |
8 | Law, Vivian, et al. "DrugBank 4.0: shedding new light on drug metabolism" Nucleic acids research, Vol. 42, No. D1, pp. D1091-D1097, Jan. 2014. DOI |
9 | Whirl-Carrillo, Michelle "Pharmacogenomics Knowledge for Personalized Medicine" Clinical Pharmacology & Therapeutics, Vol.92, No. 4, pp. 414-417, Oct. 2012. DOI |
10 | Maglott, Donna, et al. "Entrez Gene: gene-centered information at NCBI" Nucleic acids Research, Vol.39, suppl 1, pp. D52-D57, Jan. 2011. DOI |
11 | Kibbe, Warren A., et al. "Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data" Nucleic acids research, Vol.43, No. D1, pp. gku1011, Oct. 2014. |
12 | Davis, Allan Peter, et al. "The Comparative Toxicogenomics Database's 10th year anniversary: update 2015" Nucleic acids research, Vol.43, No. D1, pp. D914-D920, Jan. 2015. DOI |
13 | Lee, Insuk, et al. "Prioritizing candidate disease genes by network-based boosting of genome-wide association data" Genome Research, Vol.21, No. 7, pp. 1109-1121, Jul. 2011. DOI |
14 | Yang, Hong, et al. "Therapeutic target database update 2016: enriched resource for bench to clinical drug target and targeted pathway information" Nucleic acids research, Vol.44, No. D1, pp. D1069-D1074, Jan. 2016. DOI |
15 | Zarin, Deborah A., et al. "The ClinicalTrials.gov results database-update and key issues" New England Journal of Medicine, Vol.364, No. 9, pp. 852-860, Mar. 2011. DOI |
16 | Pinero, Janet, et al. "DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants." Nucleic Acids Research, pp. gkw943, 2016. |
17 | Kanehisa, Minoru, et al. "KEGG: new perspectives on genomes, pathways, diseases and drugs." Nucleic Acids Research, Vol.45, No. D1, pp. D353-D361, Jan. 2017. DOI |
18 | Genetics Home Reference, https://ghr.nlm.nih.gov/resources |
19 | Kim et al "Inferring Disease-related Genes using Title and Body in Biomedical Text" KIISE Transactions on Computing Practices, Vol. 23, No. 1, pp. 28-36, Jan. 2017. DOI |
20 | Butcher, J. C. "Random sampling from the normal distribution" The Computer Journal, Vol.3, No. 4, pp. 251-253, Jan. 1961. DOI |