A Review of Computational Phantoms for Quality Assurance in Radiology and Radiotherapy in the Deep-Learning Era |
Peng, Zhao
(School of Nuclear Science and Technology, University of Science and Technology of China)
Gao, Ning (School of Nuclear Science and Technology, University of Science and Technology of China) Wu, Bingzhi (School of Nuclear Science and Technology, University of Science and Technology of China) Chen, Zhi (School of Nuclear Science and Technology, University of Science and Technology of China) Xu, X. George (School of Nuclear Science and Technology, University of Science and Technology of China) |
1 | Vazquez JA, Ding A, Haley T, Caracappa PF, Xu XG. A dose-reconstruction study of the 1997 Sarov criticality accident using animated dosimetry techniques. Health Phys. 2014;106(5):571-582. DOI |
2 | Lee C, Lodwick D, Hasenauer D, Williams JL, Lee C, Bolch WE. Hybrid computational phantoms of the male and female newborn patient: NURBS-based whole-body models. Phys Med Biol. 2007;52(12):3309-3333. DOI |
3 | Lee C, Lodwick D, Hurtado J, Pafundi D, Williams JL, Bolch WE. The UF family of reference hybrid phantoms for computational radiation dosimetry. Phys Med Biol. 2010;55(2):339-363. DOI |
4 | Geyer AM, O'Reilly S, Lee C, Long DJ, Bolch WE. The UF/NCI family of hybrid computational phantoms representing the current US population of male and female children, adolescents, and adults: application to CT dosimetry. Phys Med Biol. 2014;59(18):5225-5242. DOI |
5 | Su L, Han B, Xu XG. Calculated organ equivalent doses for individuals in a sitting posture above a contaminated ground and a PET imaging room. Radiat Prot Dosimetry. 2012;148(4):439-443. DOI |
6 | Su L. Development and application of a GPU-based fast electron-photon coupled Monte Carlo code for radiation therapy. Troy, NY: Rensselaer Polytechnic Institute; 2014. |
7 | Zhang G, Liu Q, Zeng S, Luo Q. Organ dose calculations by Monte Carlo modeling of the updated VCH adult male phantom against idealized external proton exposure. Phys Med Biol. 2008;53(14):3697-3722. DOI |
8 | Zhang G, Luo Q, Zeng S, Liu Q. The development and application of the visible Chinese human model for Monte Carlo dose calculations. Health Phys. 2008;94(2):118-125. DOI |
9 | Zeng Z, Li J, Qiu R, Jia X. Dose assessment for space radiation using a proton differential dose spectrum. J Tsinghua Univ (Sci Technol) 2006;46(3):374-376. DOI |
10 | Xu XG, Chao TC, Bozkurt A. VIP-Man: an image-based whole-body adult male model constructed from color photographs of the Visible Human Project for multi-particle Monte Carlo calculations. Health Phys. 2000;78(5):476-486. DOI |
11 | Cardenas CE, Mohamed AS, Yang J, Gooding M, Veeraraghavan H, Kalpathy-Cramer J, et al. Head and neck cancer patient images for determining auto-segmentation accuracy in T2-weighted magnetic resonance imaging through expert manual segmentations. Med Phys. 2020;47(5):2317-2322. DOI |
12 | Fu W, Ria F, Segars WP, Choudhury KR, Wilson JM, Kapadia AJ, et al. Patient-informed organ dose estimation in clinical CT: implementation and effective dose assessment in 1048 clinical patients. AJR Am J Roentgenol. 2021;216(3):824-834. DOI |
13 | Choi C, Yeom YS, Lee H, Han H, Shin B, Nguyen TT, et al. Bodysize-dependent phantom library constructed from ICRP meshtype reference computational phantoms. Phys Med Biol. 2020;65(12):125014. DOI |
14 | Yeom YS, Han H, Choi C, Nguyen TT, Shin B, Lee C, et al. Posture-dependent dose coefficients of mesh-type ICRP reference computational phantoms for photon external exposures. Phys Med Biol. 2019;64(7):075018. DOI |
15 | Kim CH, Yeom YS, Petoussi-Henss N, Zankl M, Bolch WE, Lee C, et al. ICRP Publication 145: adult mesh-type reference computational phantoms. Ann ICRP. 2020;49(3):13-201. DOI |
16 | Hussain Z, Gimenez F, Yi D, Rubin D. Differential data augmentation techniques for medical imaging classification tasks. AMIA Annu Symp Proc. 2018;2017:979-984. |
17 | Isensee F, Jaeger PF, Kohl SA, Petersen J, Maier-Hein KH. nnUNet: a self-configuring method for deep learning-based biomedical image segmentation. Nat Methods. 2021;18(2):203-211. DOI |
18 | Andreo P. Monte Carlo techniques in medical radiation physics. Phys Med Biol. 1991;36(7):861-920. DOI |
19 | Zaidi H, Sgouros G. Therapeutic applications of Monte Carlo calculations in nuclear medicine. Boca Raton, FL: CRC Press; 2002. |
20 | Allison J, Amako K, Apostolakis JE, Araujo HA, Dubois PA, Asai MA, et al. Geant4 developments and applications. IEEE Trans Nucl Sci. 2006;53(1):270-278. DOI |
21 | Los Alamos National Laboratory. MCNP5: a general Monte Carlo N-particle transport code [Internet]. Los Alamos, NM: Los Alamos National Laboratory; 2003 [cited 2022 Jun 1]. Available from: https://mcnp.lanl.gov/mcnp5.shtml. |
22 | Tung CJ, Tsai SF, Tsai HY, Chen IJ. Determination of voxel phantom for reference Taiwanese adult from CT image analyses. Radiat Prot Dosimetry. 2011;146(1-3):186-190. DOI |
23 | Ferrari P. Development of an integrated couple of anthropomorphic models for dosimetric studies. Radiat Prot Dosimetry. 2010;142(2-4):191-200. DOI |
24 | Li J, Qiu R, Zhang Z, Liu L, Zeng Z, Bi L, et al. Organ dose conversion coefficients for external photon irradiation using the Chinese voxel phantom (CVP). Radiat Prot Dosimetry. 2009;135(1):33-42. DOI |
25 | Alziar I, Bonniaud G, Couanet D, Ruaud JB, Vicente C, Giordana G, et al. Individual radiation therapy patient whole-body phantoms for peripheral dose evaluations: method and specific software. Phys Med Biol. 2009;54(17):N375-N383. DOI |
26 | Courageot E, Huet C, Clairand I, Bottollier-Depois JF, Gourmelon P. Numerical dosimetric reconstruction of a radiological accident in South America in April 2009. Radiat Prot Dosimetry. 2011;144(1-4):540-542. DOI |
27 | Beck P, Zechner A, Rollet S, Berger T, Bergmann R, Hajek M, et al. MATSIM: development of a voxel model of the MATROSHKA astronaut dosimetric phantom. IEEE Trans Nucl Sci. 2011;58(4):1921-1926. DOI |
28 | Pelowitz DB. MCNPX user's manual version 2.5.0 (No. LACP-05-0369). Los Alamos, NM: Los Alamos National Laboratory; 2005. |
29 | Jones DG. A realistic anthropomorphic phantom for calculating organ doses arising from external photon irradiation. Radiat Prot Dosim. 1997;72(1):21-29. DOI |
30 | Smith T, Petoussi-Henss N, Zankl M. Comparison of internal radiation doses estimated by MIRD and voxel techniques for a "family" of phantoms. Eur J Nucl Med. 2000;27(9):1387-1398. DOI |
31 | Dimbylow P. Development of the female voxel phantom, NAOMI, and its application to calculations of induced current densities and electric fields from applied low frequency magnetic and electric fields. Phys Med Biol. 2005;50(6):1047-1070. DOI |
32 | Ferrari P, Gualdrini G. An improved MCNP version of the NORMAN voxel phantom for dosimetry studies. Phys Med Biol. 2005;50:4299-4316. DOI |
33 | Dimbylow P. Development of pregnant female, hybrid voxelmathematical models and their application to the dosimetry of applied magnetic and electric fields at 50 Hz. Phys Med Biol. 2006;51(10):2383-2394. DOI |
34 | Dimbylow P, Bolch W, Lee C. SAR calculations from 20 MHz to 6 GHz in the University of Florida newborn voxel phantom and their implications for dosimetry. Phys Med Biol. 2010;55(5):1519-1530. DOI |
35 | Caon M, Bibbo G, Pattison J. An EGS4-ready tomographic computational model of a 14-year-old female torso for calculating organ doses from CT examinations. Phys Med Biol. 1999;44(9):2213-2225. DOI |
36 | Caon M, Bibbo G, Pattison J. Monte Carlo calculated effective dose to teenage girls from computed tomography examinations. Radiat Prot Dosim. 2000;90(4):445-448. DOI |
37 | Spitzer VM, Whitlock DG. Atlas of the visible human male: reverse engineering of the human body. Sudbury, MA: Jones & Bartlett Learning. 1998. |
38 | Patni HK, Nadar MY, Akar DK, Bhati S, Sarkar PK. Selected organ dose conversion coefficients for external photons calculated using ICRP adult voxel phantoms and Monte Carlo code FLUKA. Radiat Prot Dosimetry. 2011;147(3):406-416. DOI |
39 | Dimbylow PJ. FDTD calculations of the whole-body averaged SAR in an anatomically realistic voxel model of the human body from 1 MHz to 1 GHz. Phys Med Biol. 1997;42(3):479-490. DOI |
40 | Mofrad FB, Zoroofi RA, Tehrani-Fard AA, Akhlaghpoor S, Hori M, Chen YW, et al. Statistical construction of a Japanese male liver phantom for internal radionuclide dosimetry. Radiat Prot Dosimetry. 2010;141(2):140-148. DOI |
41 | Segars WP. Development and application of the new dynamic NURBS-based cardiac-torso (NCAT) phantom [dissertation]. Chapel Hill, NC: The University of North Carolina at Chapel Hill; 2001. |
42 | Segars WP, Lalush DS, Frey EC, Manocha D, King MA, Tsui BM. Improved dynamic cardiac phantom based on 4D NURBS and tagged MRI. IEEE Trans Nucl Sci. 2009;56(5):2728-2738. DOI |
43 | Segars WP, Tsui BM, Frey EC, Johnson GA, Berr SS. Development of a 4-D digital mouse phantom for molecular imaging research. Mol Imaging Biol. 2004;6(3):149-159. DOI |
44 | Segars W, Tsui B. 4D MOBY and NCAT phantoms for medical imaging simulation of mice and men. J Nucl Med. 2007;48(suppl 2):203P. |
45 | Segars WP, Bond J, Frush J, Hon S, Eckersley C, Williams CH, et al. Population of anatomically variable 4D XCAT adult phantoms for imaging research and optimization. Med Phys. 2013;40(4):043701. DOI |
46 | Zhang J, Xu GX, Shi C, Fuss M. Development of a geometrybased respiratory motion-simulating patient model for radiation treatment dosimetry. J Appl Clin Med Phys. 2008;9(1):2700. |
47 | International Commission on Radiological Protection. Report of Committee II on permissible dose for internal radiation. Oxford, UK: Pergamon; 1959. |
48 | Zanki M, Fill U, Petoussi-Henss N, Regulla D. Organ dose conversion coefficients for external photon irradiation of male and female voxel models. Phys Med Biol. 2002;47(14):2367-2385. DOI |
49 | Tabary J, Marache-Francisco S, Valette S, Segars WP, Lartizien C. Realistic X-Ray CT simulation of the XCAT phantom with SINDBAD. Proceedings of 2009 IEEE Nuclear Science Symposium Conference Record (NSS/MIC); 2009 Oct 24-Nov 1; Orlando, FL. p. 3980-3983. |
50 | Caon M. Voxel-based computational models of real human anatomy: a review. Radiat Environ Biophys. 2004;42(4):229-235. DOI |
51 | International Commission on Radiological Protection. Report of the Task Group on Reference Man (ICRP Publication 23). Oxford, UK: Pergamon; 1975. |
52 | Snyder WS. Estimates of specific absorbed fractions for monoenergetic photon sources uniformly distributed in various organs of a heterogeneous phantom. New York, NY: Society of Nuclear Medicine; 1978. |
53 | Hwang JM, Shoup RL, Poston JW. Mathematical description of a newborn human for use in dosimetry calculations. Oak Ridge, TN: Oak Ridge National Laboratory; 1976. |
54 | Zaidi H, Xu XG. Computational anthropomorphic models of the human anatomy: the path to realistic Monte Carlo modeling in radiological sciences. Annu Rev Biomed Eng. 2007;9:471-500. DOI |
55 | Agostinelli S, Allison J, Amako KA, Apostolakis J, Araujo H, Arce P, et al. GEANT4-a simulation toolkit. Nucl Instrum Methods Phys Res A. 2003;506(3):250-303. DOI |
56 | Leyton M. A generative theory of shape. Berlin, Germany: Springer; 2001. |
57 | Stroud I. Boundary representation modelling techniques. London, UK: Springer; 2006. |
58 | Xu XG, Eckerman KF. Handbook of anatomical models for radiation dosimetry. Boca Raton, FL: CRC Press; 2009. |
59 | Fisher HL, Snyder WS. Variation of dose delivered by 137Cs as a function of body size from infancy to adulthood. Oak Ridge, TN: Oak Ridge National Laboratory; 1966. p. 221-228. |
60 | Snyder WS, Fisher HL Jr, Ford MR, Warner GG. Estimates of absorbed fractions for monoenergetic photon sources uniformly distributed in various organs of a heterogeneous phantom. J Nucl Med. 1969:Suppl 3:7-52. |
61 | Chen J. Mathematical models of the embryo and fetus for use in radiological protection. Health Phys. 2004;86(3):285-295. DOI |
62 | Cristy M, Eckerman KF. Specific absorbed fractions of energy at various ages from internal photon sources (1. Methods). Oak Ridge, TN: Oak Ridge National Laboratory; 1987. |
63 | Computational Medical Physics Working Group. Phantoms [Internet]. La Grange Park, IL; American Nuclear Society; c2005 [cited 2022 Jun 1]. Available from: http://cmpwg.ans.org/phantoms.html. |
64 | Pretorius PH, Xia W, King MA, Tsui BM, Pan TS, Villegas BJ. Evaluation of right and left ventricular volume and ejection fraction using a mathematical cardiac torso phantom. J Nucl Med. 1997;38(10):1528-1535. |
65 | Liu T. Development of ARCHER-a parallel Monte Carlo radiation transport code-for X-ray CT dose calculations using GPU and coprocessor technologies. Troy, NY: Rensselaer Polytechnic Institute; 2014. |
66 | Xu Y. Method of virtual source modeling for external photon radiotherapy and its clinical application in dose checking [dissertation]. Hefei, China: University of Science and Technology of China; 2021. |
67 | Stapleford LJ, Lawson JD, Perkins C, Edelman S, Davis L, McDonald MW, et al. Evaluation of automatic atlas-based lymph node segmentation for head-and-neck cancer. Int J Radiat Oncol Biol Phys. 2010;77(3):959-966. DOI |
68 | Choi C, Shin B, Yeom YS, Nguyen TT, Han H, Ha S, et al. Development of paediatric mesh-type reference computational phantom series of International Commission on Radiological Protection. J Radiol Prot. 2021;41(3):S160. DOI |
69 | Peng Z, Fang X, Yan P, Shan H, Liu T, Pei X, et al. A method of rapid quantification of patient-specific organ doses for CT using deep-learning-based multi-organ segmentation and GPUaccelerated Monte Carlo dose computing. Med Phys. 2020;47(6):2526-2536. DOI |
70 | Lee C, Liu J, Griffin K, Folio L, Summers RM. Adult patientspecific CT organ dose estimations using automated segmentations and Monte Carlo simulations. Biomed Phys Eng Express. 2020;6(4):045016. DOI |
71 | Billings MP, Yucker WR. The computerized anatomical man (CAM) model (No. NASA CR-134043). Washington, DC: Government Printing Office; 1973. |
72 | Cristy, M. Mathematical phantoms representing children of various ages for use in estimates of internal dose. Oak Ridge, TN: Oak Ridge National Laboratory; 1980. |
73 | Deus SF, Poston JW. Development of a mathematical phantom representing a ten-year-old for use in internal dosimetry calculations. Oak Ridge, TN: Oak Ridge National Laboratory; 1976. |
74 | Stabin MG, Watson EE, Cristy M, Ryman JC, Eckerman KF, Davis JL, et al. Mathematical models and specific absorbed fractions of photon energy in the nonpregnant adult female and at the end of each trimester of pregnancy. Oak Ridge, TN: Oak Ridge National Laboratory; 1995. |
75 | Bouchet LG, Bolch WE, Weber DA, Atkins HL, Poston JW Sr. MIRD Pamphlet No. 15: radionuclide S values in a revised dosimetric model of the adult head and brain: medical internal radiation dose. J Nucl Med. 1999;40(3):62S-101S. |
76 | Shi C, Xu XG. Development of a 30-week-pregnant female tomographic model from computed tomography (CT) images for Monte Carlo organ dose calculations. Med Phys. 2004;31(9):2491-2497. DOI |
77 | Shi CY, Xu XG, Stabin MG. SAF values for internal photon emitters calculated for the RPI-P pregnant-female models using Monte Carlo methods. Med Phys. 2008;35(7):3215-3224. DOI |
78 | Nipper JC, Williams JL, Bolch WE. Creation of two tomographic voxel models of paediatric patients in the first year of life. Phys Med Biol. 2002;47(17):3143-3164. DOI |
79 | Lee C, Williams JL, Lee C, Bolch WE. The UF series of tomographic computational phantoms of pediatric patients. Med Phys. 2005;32(12):3537-3548. DOI |
80 | Badal A, Badano A. Accelerating Monte Carlo simulations of photon transport in a voxelized geometry using a massively parallel graphics processing unit. Med Phys. 2009;36(11):4878-4880. DOI |
81 | Jia X, Gu X, Graves YJ, Folkerts M, Jiang SB. GPU-based fast Monte Carlo simulation for radiotherapy dose calculation. Phys Med Biol. 2011;56(22):7017-7031. DOI |
82 | Jia X, Gu X, Sempau J, Choi D, Majumdar A, Jiang SB. Development of a GPU-based Monte Carlo dose calculation code for coupled electron-photon transport. Phys Med Biol. 2010;55(11):3077-3086. DOI |
83 | Hissoiny S, Ozell B, Bouchard H, Despres P. GPUMCD: a new GPU-oriented Monte Carlo dose calculation platform. Med Phys. 2011;38(2):754-764. DOI |
84 | Tickner J. Monte Carlo simulation of X-ray and gamma-ray photon transport on a graphics-processing unit. Comput Phys Commun. 2010;181(11):1821-1832. DOI |
85 | Jia X, Yan H, Gu X, Jiang SB. Fast Monte Carlo simulation for patient-specific CT/CBCT imaging dose calculation. Phys Med Biol. 2012;57(3):577-590. DOI |
86 | Goorley JT, James MR, Booth TE, Brown FB, Bull JS, Cox LJ, et al. Initial MCNP6 release overview-MCNP6 version 1.0 (No. LA-UR-13-22934) [Internet]. Los Alamos, NM: Los Alamos National Laboratory; 2013 [cited 2022 Jun 1]. Available from: https://www.osti.gov/biblio/1086758-initial-mcnp6-release-overview-mcnp6-version. |
87 | McGurk R, Seco J, Riboldi M, Wolfgang J, Segars P, Paganetti H. Extension of the NCAT phantom for the investigation of intrafraction respiratory motion in IMRT using 4D Monte Carlo. Phys Med Biol. 2010;55(5):1475-1490. DOI |
88 | Gu S, Gupta R, Kyprianou I. Computational high-resolution heart phantoms for medical imaging and dosimetry simulations. Phys Med Biol. 2011;56(18):5845-5864. DOI |
89 | Stabin MG, Xu XG, Emmons MA, Segars WP, Shi C, Fernald MJ. RADAR reference adult, pediatric, and pregnant female phantom series for internal and external dosimetry. J Nucl Med. 2012;53(11):1807-1813. DOI |
90 | Kramer R, Cassola VF, Khoury HJ, Vieira JW, Lima VJ, Brown KR. FASH and MASH: female and male adult human phantoms based on polygon mesh surfaces: II. Dosimetric calculations. Phys Med Biol. 2010;55(1):163-189. DOI |
91 | Kim CH, Jeong JH, Bolch WE, Cho KW, Hwang SB. A polygonsurface reference Korean male phantom (PSRK-Man) and its direct implementation in Geant4 Monte Carlo simulation. Phys Med Biol. 2011;56(10):3137-3161. DOI |
92 | Tsui BM, Terry JA, Gullberg GT. Evaluation of cardiac cone-beam single photon emission computed tomography using observer performance experiments and receiver operating characteristic analysis. Invest Radiol. 1993;28(12):1101-1112. DOI |
93 | Tsui BM, Zhao XD, Gregoriou GK, Lalushl DS, Frey EC, Johnston RE, et al. Quantitative cardiac SPECT reconstruction with reduced image degradation due to patient anatomy. IEEE Trans Nucl Sci. 1994;41(6):2838-2844. DOI |
94 | Park S, Lee JK, Lee C. Development of a Korean adult male computational phantom for internal dosimetry calculation. Radiat Prot Dosimetry. 2006;121(3):257-264. DOI |
95 | Hegenbart L, Na YH, Zhang JY, Urban M, Xu XG. A Monte Carlo study of lung counting efficiency for female workers of different breast sizes using deformable phantoms. Phys Med Biol. 2008;53(19):5527-5538. DOI |
96 | Su L, Yang Y, Bednarz B, Sterpin E, Du X, Liu T, et al. ARCHERRT: a GPU-based and photon-electron coupled Monte Carlo dose computing engine for radiation therapy: software development and application to helical tomotherapy. Med Phys. 2014;41(7):071709. DOI |
97 | Cardenas CE, Yang J, Anderson BM, Court LE, Brock KB. Advances in auto-segmentation. Semin Radiat Oncol. 2019;29(3):185-197. DOI |
98 | Kurzweil R. The singularity is near: when humans transcend biology. London, UK: Penguin Books; 2005. |
99 | Eom J, Xu XG, De S, Shi C. Predictive modeling of lung motion over the entire respiratory cycle using measured pressure-volume data, 4DCT images, and finite-element analysis. Med Phys. 2010;37(8):4389-4400. DOI |
100 | Becker J, Zankl M, Petoussi-Henss N. A software tool for modification of human voxel models used for application in radiation protection. Phys Med Biol. 2007;52(9):N195-N205. DOI |
101 | Menzel HG, Clement C, DeLuca P. Realistic reference phantoms: an ICRP/ICRU joint effort. A report of adult reference computational phantoms (ICRP Publication 110). Ann ICRP. 2009;39(2):1-164. DOI |
102 | Pafundi D, Lee C, Watchman C, Bourke V, Aris J, Shagina N, et al. An image-based skeletal tissue model for the ICRP reference newborn. Phys Med Biol. 2009;54(14):4497-4531. DOI |
103 | Weszka JS. A survey of threshold selection techniques. Comput Graph Image Process. 1978;7(2):259-265. DOI |
104 | Xu XG. An exponential growth of computational phantom research in radiation protection, imaging, and radiotherapy: a review of the fifty-year history. Phys Med Biol. 2014;59(18):R233-R2302. DOI |
105 | Eckerman KF, Poston JW, Bolch WE, Xu XG. Stylized computational phantoms developed at ORNL and elsewhere. In: Handbook of anatomical models for radiation dosimetry. Boca Raton, FL: CRC Press; 2009. p. 43-64. |
106 | Moussallem M, Valette PJ, Traverse-Glehen A, Houzard C, Jegou C, Giammarile F. New strategy for automatic tumor segmentation by adaptive thresholding on PET/CT images. J Appl Clin Med Phys. 2012;13(5):3875. |
107 | Boykov YY, Jolly MP. Interactive graph cuts for optimal boundary & region segmentation of objects in ND images. Proceedings of the 8th IEEE International Conference on Computer Vision (ICCV); 2001 Jul 7-14; Vancouver, Canada. p. 105-112. |
108 | Mangan AP, Whitaker RT. Partitioning 3D surface meshes using watershed segmentation. IEEE Trans Vis Comput Graph. 1999;5(4):308-321. DOI |
109 | Stawiaski J, Decenciere E, Bidault F. Spatio-temporal segmentation for radiotherapy planning. In: Fitt A, Norbury J, Ockendon H, Wilson E, editors. Progress in industrial mathematics at ECMI 2008. Heidelberg, Germany: Springer; 2010. p. 223-228. |
110 | Qiu R, Li J, Zhang Z, Wu Z, Zeng Z, Fan J. Photon SAF calculation based on the Chinese mathematical phantom and comparison with the ORNL phantoms. Health Phys. 2008;95(6):716-724. DOI |
111 | Sato K, Noguchi H, Emoto Y, Koga S, Saito K. Japanese adult male voxel phantom constructed on the basis of CT images. Radiat Prot Dosimetry. 2007;123(3):337-344. DOI |
112 | Jones RM, Poston JW, Hwang JL, Jones TD, Warner GG. Development and use of a fifteen year-old equivalent mathematical phantom for internal dose calculations (No. ORNL/TM-5278). Oak Ridge, TN: Oak Ridge National Laboratory; 1976. |
113 | Lee C, Lee C, Williams JL, Bolch WE. Whole-body voxel phantoms of paediatric patients: UF Series B. Phys Med Biol. 2006;51(18):4649-4661. DOI |
114 | Saito K, Wittmann A, Koga S, Ida Y, Kamei T, Funabiki J, et al. Construction of a computed tomographic phantom for a Japanese male adult and dose calculation system. Radiat Environ Biophys. 2001;40(1):69-75. DOI |
115 | Sato K, Noguchi H, Endo A, Emoto Y, Koga S, Saito K. Development of a voxel phantom of Japanese adult male in upright posture. Radiat Prot Dosimetry. 2007;127(1-4):205-208. DOI |
116 | Takahashi M, Kinase S, Kramer R. Evaluation of counting efficiencies of a whole-body counter using Monte Carlo simulation with voxel phantoms. Radiat Prot Dosimetry. 2011;144(1-4):407-410. DOI |
117 | Salvat F, Fernandez-Varea JM, Sempau J. PENELOPE-2006: a code system for Monte Carlo simulation of electron and photon transport. Barcelona, Spain: Nuclear Energy Agency, Organization for Economic Co-operation and Development; 2006. |
118 | Pratx G, Xing L. GPU computing in medical physics: a review. Med Phys. 2011;38(5):2685-2697. DOI |
119 | Jia X, Xu XG, Orton CG. Point/counterpoint. GPU technology is the hope for near real-time Monte Carlo dose calculations. Med Phys. 2015;42(4):1474-1476. DOI |
120 | Tward DJ, Ceritoglu C, Sturgeon G, Segars WP, Miller MI, Ratnanather JT. Generating patient-specific dosimetry phantoms with whole-body diffeomorphic image registration. Proceedings of 2011 IEEE 37th Annual Northeast Bioengineering Conference (NEBEC); 2011 Apr 1-3; Troy, NY. p. 1-2. |
121 | Veress AI, Segars WP, Tsui BM, Gullberg GT. Incorporation of a left ventricle finite element model defining infarction into the XCAT imaging phantom. IEEE Trans Med Imaging. 2011;30(4):915-927. DOI |
122 | Mishra P, Li R, James SS, Mak RH, Williams CL, Yue Y, et al. Evaluation of 3D fluoroscopic image generation from a single planar treatment image on patient data with a modified XCAT phantom. Phys Med Biol. 2013;58(4):841-858. DOI |
123 | Xu XG, Taranenko V, Zhang J, Shi C. A boundary-representation method for designing whole-body radiation dosimetry models: pregnant females at the ends of three gestational periods: RPI-P3, -P6 and -P9. Phys Med Biol. 2007;52(23):7023-7044. DOI |
124 | Zhang J, Na YH, Caracappa PF, Xu XG. RPI-AM and RPI-AF, a pair of mesh-based, size-adjustable adult male and female computational phantoms using ICRP-89 parameters and their calculations for organ doses from monoenergetic photon beams. Phys Med Biol. 2009;54(19):5885-5908. DOI |
125 | Ding A, Mille MM, Liu T, Caracappa PF, Xu XG. Extension of RPI-adult male and female computational phantoms to obese patients and a Monte Carlo study of the effect on CT imaging dose. Phys Med Biol. 2012;57(9):2441-2459. DOI |
126 | Niu X, Yang Y, Jin M, Wernick MN, King MA. Regularized fully 5D reconstruction of cardiac gated dynamic SPECT images. IEEE Trans Nucl Sci. 2010;57(6):1085-1095. DOI |
127 | Xie T, Zaidi H. Evaluation of radiation dose to anthropomorphic paediatric models from positron-emitting labelled tracers. Phys Med Biol. 2014;59(5):1165-1187. DOI |
128 | Gardumi A, Farah J, Desbree A. Creation of ORNL NURBS-based phantoms: evaluation of the voxel effect on absorbed doses from radiopharmaceuticals. Radiat Prot Dosimetry. 2013;153(3):273-281. DOI |
129 | Kim JH, Kim CS, Whang JH. Assessment of radiation dose for surrounding organs and persons approaching implanted patients upon brachytherapy of prostate cancer with Iridium-192. Radiat Prot Dosimetry. 2010;141(3):283-288. DOI |
130 | Bento J, Barros S, Teles P, Neves M, Goncalves I, Corisco J, et al. Monte Carlo simulation of the movement and detection efficiency of a whole-body counting system using a BOMAB phantom. Radiat Prot Dosimetry. 2012;148(4):403-413. DOI |
131 | Bouchet LG, Bolch WE, Blanco HP, Wessels BW, Siegel JA, Rajon DA, et al. MIRD Pamphlet No 19: absorbed fractions and radionuclide S values for six age-dependent multiregion models of the kidney. J Nucl Med. 2003;44(7):1113-1147. |
132 | Saito K, Koga S, Ida Y, Kamei T, Funabiki J. Construction of a voxel phantom based on CT data for a Japanese female adult and its use for calculation of organ doses from external electrons. Jpn J Health Phys. 2008;43(2):122-130. DOI |
133 | Nagaoka T, Watanabe S, Sakurai K, Kunieda E, Watanabe S, Taki M, et al. Development of realistic high-resolution wholebody voxel models of Japanese adult males and females of average height and weight, and application of models to radiofrequency electromagnetic-field dosimetry. Phys Med Biol. 2004;49(1):1-15. DOI |
134 | Kramer R, Khoury HJ, Vieira JW, Lima VJ. MAX06 and FAX06: update of two adult human phantoms for radiation protection dosimetry. Phys Med Biol. 2006;51(14):3331-3346. DOI |
135 | Sjogreen K, Ljungberg M, Wingardh K, Erlandsson K, Strand SE. Registration of emission and transmission whole-body scintillation-camera images. J Nucl Med. 2001;42(10):1563-1570. |
136 | Kramer R, Vieira JW, Khoury HJ, Lima FR, Fuelle D. All about MAX: a male adult voxel phantom for Monte Carlo calculations in radiation protection dosimetry. Phys Med Biol. 2003;48(10):1239-1262. DOI |
137 | Kramer R, Khoury HJ, Vieira JW, Loureiro EC, Lima VJ, Lima FR, et al. All about FAX: a Female Adult voXel phantom for Monte Carlo calculation in radiation protection dosimetry. Phys Med Biol. 2004;49(23):5203-5216. DOI |
138 | Akkurt H, Bekar KB, Eckerman KF. VOXMAT: phantom model with combination of voxel and mathematical geometry. Health Phys. 2008;95(1):S100. |
139 | Dimbylow PJ. The development of realistic voxel phantoms for electromagnetic field dosimetry. Proceedings of an International Workshop on Voxel Phantom Development; 1995 Jul 6-7; Chilton, UK. |
140 | Valentin J. Basic anatomical and physiological data for use in radiological protection: reference values (ICRP Publication 89). Ann ICRP. 2002;32(3-4):5-265. DOI |
141 | Gu J, Bednarz B, Xu XG, Jiang SB. Assessment of patient organ doses and effective doses using the VIP-Man adult male phantom for selected cone-beam CT imaging procedures during image guided radiation therapy. Radiat Prot Dosimetry. 2008;131(4):431-443. DOI |
142 | Stovall M, Smith SA, Rosenstein M. Tissue doses from radiotherapy of cancer of the uterine cervix. Med Phys. 1989;16(5):726-733. DOI |
143 | Bhati S, Patni HK, Ghare VP, Singh IS, Nadar MY. Monte Carlo calculations for efficiency calibration of a whole-body monitor using BOMAB phantoms of different sizes. Radiat Prot Dosimetry. 2012;148(4):414-419. DOI |
144 | Hough M, Johnson P, Rajon D, Jokisch D, Lee C, Bolch W. An image-based skeletal dosimetry model for the ICRP reference adult male: internal electron sources. Phys Med Biol. 2011;56(8):2309-2346. DOI |
145 | Xie T, Bolch WE, Lee C, Zaidi H. Pediatric radiation dosimetry for positron-emitting radionuclides using anthropomorphic phantoms. Med Phys. 2013;40(10):102502. DOI |
146 | Pafundi D, Rajon D, Jokisch D, Lee C, Bolch W. An imagebased skeletal dosimetry model for the ICRP reference newborn--internal electron sources. Phys Med Biol. 2010;55(7):1785-1814. DOI |
147 | International Commission on Radiation Units and Measurements. Phantoms and computational models in therapy, diagnosis and protection. Bethesda, MD: International Commission on Radiation Units and Measurements; 1992. |
148 | Reece WD, Poston Sr JW, Xu XG. Determining the effective dose equivalent for external photon radiation: calculational results for beam and point source geometries. Radiat Prot Dosim. 1994;55(1):5-21. DOI |
149 | Gibbs SJ, Pujol A Jr, Chen TS, Malcolm AW, James AE Jr. Patient risk from interproximal radiography. Oral Surg Oral Med Oral Pathol. 1984;58(3):347-354. DOI |
150 | Reece WD, Xu XG. Determining the effective dose equivalent for external photon radiation: assessing effective dose equivalent from personnel dosemeter readings. Radiat Prot Dosim. 1997;69(3):167-178. DOI |
151 | Zankl M, Veit R, Williams G, Schneider K, Fendel H, Petoussi N, et al. The construction of computer tomographic phantoms and their application in radiology and radiation protection. Radiat Environ Biophys. 1988;27(2):153-164. DOI |
152 | Fill UA, Zankl M, Petoussi-Henss N, Siebert M, Regulla D. Adult female voxel models of different stature and photon conversion coefficients for radiation protection. Health Phys. 2004;86(3):253-272. DOI |
153 | Lima VJ, Cassola VF, Kramer R, Lira CA, Khoury HJ, Vieira JW. Development of 5- and 10-year-old pediatric phantoms based on polygon mesh surfaces. Med Phys. 2011;38(8):4723-4736. DOI |
154 | Farah J, Broggio D, Franck D. Creation and use of adjustable 3D phantoms: application for the lung monitoring of female workers. Health Phys. 2010;99(5):649-661. DOI |
155 | Broggio D, Beurrier J, Bremaud M, Desbree A, Farah J, Huet C, et al. Construction of an extended library of adult male 3D models: rationale and results. Phys Med Biol. 2011;56(23):7659-7662. DOI |
156 | Stabin M, Emmons MA, Segars WP, Fernald M, Brill AB. ICRP89 based adult and pediatric phantom series. J Nucl Med. 2008;49(Suppl 1):14P. |
157 | Kass M, Witkin A, Terzopoulos D. Snakes: active contour models. Int J Comput Vis. 1988;1(4):321-331. DOI |
158 | El Naqa I, Yang D, Apte A, Khullar D, Mutic S, Zheng J, et al. Concurrent multimodality image segmentation by active contours for radiotherapy treatment planning. Med Phys. 2007;34(12):4738-4749. DOI |
159 | Zhang Y, Brady M, Smith S. Segmentation of brain MR images through a hidden Markov random field model and the expectation-maximization algorithm. IEEE Trans Med Imaging. 2001;20(1):45-57. DOI |
160 | Yang J, Beadle BM, Garden AS, Schwartz DL, Aristophanous M. A multimodality segmentation framework for automatic target delineation in head and neck radiotherapy. Med Phys. 2015;42(9):5310-5320. DOI |
161 | Pekar V, Allaire S, Qazi A, Kim JJ, Jaffray DA. Head and neck auto-segmentation challenge: segmentation of the parotid glands. In: Jiang T, Navab N, Pluim JP, Viergever MA, editors. Medical image computing and computer-assisted intervention - MICCAI 2010. Heidelberg, Germany: Springer, 2010. p. 273-280. |
162 | Dawson TW, Caputa K, Stuchly MA. A comparison of 60 Hz uniform magnetic and electric induction in the human body. Phys Med Biol. 1997;42(12):2319-2329. DOI |
163 | International Commission on Radiological Protection. 2002 Annual report of the International Commission on Radiological Protection [Internet]. Ottawa, Canada: International Commission on Radiological Protection; 2003 [cited 2022 Oct 4]. Available: https://www.icrp.org/docs/2002_ann_rep_52_429_03.pdf. |
164 | Schlattl H, Zankl M, Petoussi-Henss N. Organ dose conversion coefficients for voxel models of the reference male and female from idealized photon exposures. Phys Med Biol. 2007;52(8):2123-2145. DOI |
165 | Zubal IG, Harrell CR, Smith EO, Rattner Z, Gindi G, Hoffer PB. Computerized three-dimensional segmented human anatomy. Med Phys. 1994;21(2):299-302. DOI |
166 | Lee C, Lodwick D, Williams JL, Bolch WE. Hybrid computational phantoms of the 15-year male and female adolescent: applications to CT organ dosimetry for patients of variable morphometry. Med Phys. 2008;35(6):2366-2382. DOI |
167 | Christ A, Kainz W, Hahn EG, Honegger K, Zefferer M, Neufeld E, et al. The Virtual Family: development of surface-based anatomical models of two adults and two children for dosimetric simulations. Phys Med Biol. 2010;55(2):N23-N38. DOI |
168 | Gosselin MC, Neufeld E, Moser H, Huber E, Farcito S, Gerber L, et al. Development of a new generation of high-resolution anatomical models for medical device evaluation: the Virtual Population 3.0. Phys Med Biol. 2014;59(18):5287-5303. DOI |
169 | Wu D, Shamsi S, Chen J, Kainz W. Evaluations of specific absorption rate and temperature increase within pregnant female models in magnetic resonance imaging birdcage coils. IEEE Trans Microw Theory Tech. 2006;54(12):4472-4478. DOI |
170 | Han MC, Kim CH, Jeong JH, Yeom YS, Kim S, Wilson PP, et al. DagSolid: a new Geant4 solid class for fast simulation in polygon-mesh geometry. Phys Med Biol. 2013;58(13):4595-4609. DOI |
171 | Raudaschl PF, Zaffino P, Sharp GC, Spadea MF, Chen A, Dawant BM, et al. Evaluation of segmentation methods on head and neck CT: auto-segmentation challenge 2015. Med Phys. 2017;44(5):2020-2036. DOI |
172 | Yang J, Sharp GC, Gooding MJ. Introduction to Auto-Segmentation in Radiation Oncology. In: Auto-segmentation for radiation oncology. Boca Raton, FL: CRC Press; 2021. p. 1-10. |
173 | Ronneberger O, Fischer P, Brox T. U-Net: convolutional networks for biomedical image segmentation. In: Navab N, Hornegger J, Wells W, Frangi A, editors. Medical image computing and computer-assisted intervention - MICCAI 2010. Cham, Switzerland: Springer; 2015. p. 234-241. |
174 | Yang J, Veeraraghavan H, Armato SG 3rd, Farahani K, Kirby JS, Kalpathy-Kramer J, et al. Autosegmentation for thoracic radiation treatment planning: a grand challenge at AAPM 2017. Med Phys. 2018;45(10):4568-4581. DOI |
175 | Maynard MR, Geyer JW, Aris JP, Shifrin RY, Bolch W. The UF family of hybrid phantoms of the developing human fetus for computational radiation dosimetry. Phys Med Biol. 2011;56(15):4839-4879. DOI |
176 | Eckerman KF. Aspects of the dosimetry of radionuclides within the skeleton with particular emphasis on the active marrow. Oak Ridge, TN: Oak Ridge National Laboratory; 1985. |
177 | Johnson PB, Bahadori AA, Eckerman KF, Lee C, Bolch WE. Response functions for computing absorbed dose to skeletal tissues from photon irradiation: an update. Phys Med Biol. 2011;56(8):2347-2365. DOI |
178 | Kim CH, Yeom YS, Nguyen TT, Han MC, Choi C, Lee H, et al. New mesh-type phantoms and their dosimetric applications, including emergencies. Ann ICRP. 2018;47(3-4):45-62. DOI |
179 | Xu XG, Liu T, Su L, Du X, Riblett M, Ji W, et al. ARCHER, a new Monte Carlo software tool for emerging heterogeneous computing environments. Proceedings of 2013 Joint International Conference on Supercomputing in Nuclear Applications+ Monte Carlo (SNA+MC); 2013 Oct 27-31; Paris, France. |
180 | Yeom YS, Jeong JH, Han MC, Kim CH. Tetrahedral-meshbased computational human phantom for fast Monte Carlo dose calculations. Phys Med Biol. 2014;59(12):3173-3185. DOI |
181 | Samarasinghe G, Jameson M, Vinod S, Field M, Dowling J, Sowmya A, et al. Deep learning for segmentation in radiation therapy planning: a review. J Med Imaging Radiat Oncol. 2021;65(5):578-595. DOI |
182 | Carter LM, Camilo Ocampo Ramos J, Bolch WE, Lewis JS, Kesner AL. Technical Note: Patient-morphed mesh-type phantoms to support personalized nuclear medicine dosimetry: a proof of concept study. Med Phys. 2021;48(4):2018-2026. DOI |
183 | Bagheri M, Parach AA, Razavi-Ratki SK, Nafisi-Moghadam R, Jelodari MA. Patient-specific dosimetry for pediatric imaging of 99mTc-dimercaptosuccinic acid with gate Monte Carlo code. Radiat Prot Dosimetry. 2018;178(2):213-222. DOI |
184 | Raeside DE. Monte Carlo principles and applications. Phys Med Biol. 1976;21(2):181-197. DOI |
185 | Turner JE, Wright HA, Hamm RN. A Monte Carlo primer for health physicists. Health Phys. 1985;48(6):717-733. DOI |
186 | Zaidi H. Relevance of accurate Monte Carlo modeling in nuclear medical imaging. Med Phys. 1999;26(4):574-608. DOI |
187 | Rogers DW. Fifty years of Monte Carlo simulations for medical physics. Phys Med Biol. 2006;51(13):R287-R301. DOI |
188 | Kim JS, Ha WH, Jeong JH, Cho KW, Lee JK. Use of photographic images to construct voxel phantoms for use in whole-body counting. Radiat Prot Dosimetry. 2010;138(2):119-122. DOI |
189 | Nagaoka T, Kunieda E, Watanabe S. Proportion-corrected scaled voxel models for Japanese children and their application to the numerical dosimetry of specific absorption rate for frequencies from 30 MHz to 3 GHz. Phys Med Biol. 2008;53(23):6695-6711. DOI |
190 | Kim CH, Choi SH, Jeong JH, Lee C, Chung MS. HDRK-Man: a whole-body voxel model based on high-resolution color slice images of a Korean adult male cadaver. Phys Med Biol. 2008;53(15):4093-4106. DOI |
191 | Lee B, Shin G, Kang S, Shin B, Back I, Park H, et al. Dose evaluation of selective collimation effect in cephalography by measurement and Monte Carlo simulation. Radiat Prot Dosimetry. 2012;148(1):58-64. DOI |
192 | Zhang B, Ma J, Liu L, Cheng J. CNMAN: a Chinese adult male voxel phantom constructed from color photographs of a visible anatomical data set. Radiat Prot Dosimetry. 2007;124(2):130-136. DOI |
193 | Zhang G, Liu Q, Luo Q. Monte Carlo simulations for external neutron dosimetry based on the visible Chinese human phantom. Phys Med Biol. 2007;52(24):7367-7383. DOI |
194 | Han B, Zhang J, Na YH, Caracappa PF, Xu XG. Modelling and Monte Carlo organ dose calculations for workers walking on ground contaminated with Cs-137 and Co-60 gamma sources. Radiat Prot Dosimetry. 2010;141(3):299-304. DOI |
195 | Gibbs SJ, Pujol A Jr, Chen TS, Carlton JC, Dosmann MA, Malcolm AW, et al. Radiation doses to sensitive organs from intraoral dental radiography. Dentomaxillofac Radiol. 1987;16(2):67-77. DOI |
196 | Xu XG, Reece WD, Poston JW Sr. A study of the angular dependence problem in effective dose equivalent assessment. Health Phys. 1995;68(2):214-224. DOI |
197 | Xu XG, Reece WD. Sex-specific tissue weighting factors for effective dose equivalent calculations. Health Phys. 1996;70(1):81-86. DOI |
198 | Pujol A Jr, Gibbs SJ. A Monte Carlo method for patient dosimetry from dental X-ray. Dentomaxillofac Radiol. 1982;11(1):25-33. DOI |
199 | Williams G, Zankl M, Abmayr W, Veit R, Drexler G. The calculation of dose from external photon exposures using reference and realistic human phantoms and Monte Carlo methods. Phys Med Biol. 1986;31(4):449-452. DOI |
200 | Bahadori AA, Johnson P, Jokisch DW, Eckerman KF, Bolch WE. Response functions for computing absorbed dose to skeletal tissues from neutron irradiation. Phys Med Biol. 2011;56(21):6873-6897. DOI |
201 | Johnson P, Lee C, Johnson K, Siragusa D, Bolch WE. The influence of patient size on dose conversion coefficients: a hybrid phantom study for adult cardiac catheterization. Phys Med Biol. 2009;54(12):3613-3629. DOI |
202 | Kainz W, Neufeld E, Bolch WE, Graff CG, Kim CH, Kuster N, et al. Advances in computational human phantoms and their applications in biomedical engineering: a topical review. IEEE Trans Radiat Plasma Med Sci. 2019;3(1):1-23. DOI |
203 | Lee H, Yeom YS, Nguyen TT, Choi C, Han H, Shin B, et al. Percentile-specific computational phantoms constructed from ICRP mesh-type reference computational phantoms (MRCPs). Phys Med Biol. 2019;64(4):045005. DOI |
204 | National Research Council Canada. EGSnrc [Internet]. Ottawa, Canada: National Research Council Canada; c2019 [cited 2022 Jun 1]. Available from: https://nrc-cnrc.github.io/EGSnrc/. |
205 | Battistoni G, Cerutti F, Fasso A, Ferrari A, Muraro S, Ranft J, et al. The FLUKA code: description and benchmarking. AIP Conf Proc. 2007;896(1):31-49. |
206 | Shin HC, Roth HR, Gao M, Lu L, Xu Z, Nogues I, et al. Deep convolutional neural networks for computer-aided detection: CNN architectures, dataset characteristics and transfer learning. IEEE Trans Med Imaging. 2016;35(5):1285-1298. DOI |