Acknowledgement
The authors thank the Yasouj University for financial support.
References
- Aboshosha, S. S., Atta Alla, S. I., El-Korany, A. E. and El-Argawy, E. 2007. Characterization of Macrophomina phaseolina isolates affecting sunflower growth in El-Behera governorate, Egypt. Int. J. Agri. Biol. 9: 807-815.
- Aghakhani, M. and Dubey, S. C. 2009. Determination of genetic diversity among Indian isolates of Rhizoctonia bataticola causing dry root rot of chickpea. Antonie Van Leeuwenhoek. 96: 607-619. https://doi.org/10.1007/s10482-009-9375-y
- Almeida, A. M., Abdelnoor, R. V., Arias, C. A. A., Carvalho, V. P., Jacoud Filho, D. S., Marin, S. R. et al. 2003. Genotypic diversity among Brazilian isolates of Macrophomina phaseolina revealed by RAPD. Fitopatol. Bras. 28: 279-285. https://doi.org/10.1590/S0100-41582003000300009
- Brown, J. K. and Hovmoller, M. S. 2002. Aerial dispersal of pathogens on the global and continental scales and its impact on plant disease. Science 297: 537-541. https://doi.org/10.1126/science.1072678
- Carbone, I. and Kohn, L. M. 1999. A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia 91: 553-556. https://doi.org/10.1080/00275514.1999.12061051
- Carlile, M. J. 1986. Genetic exchange and gene flow: their promotion and prevention. In: Evolutionary Biological of the Fungi, eds. by A. D. M. Rayner and D. Moore, pp. 203-214. Cambridge University Press, Cambridge, UK.
- Chattopadadhyay, C., Kolte, S. J. and Waliyar, F. 2019. Diseases of edible oilseed crops. CRC Press, Boca Raton, FL, USA. 293-325 pp.
- Chen, R. S., Boeger, J. M. and McDonald, B. A. 1994. Genetic stability in a population of a plant pathogenic fungus over time. Mol. Ecol. 3: 209-218. https://doi.org/10.1111/j.1365-294X.1994.tb00054.x
- Crous, P. W., Slippers, B., Wingfield, M. J., Rheeder, J., Marasas, W. F., Philips, A. J. et al. 2006. Phylogenetic lineages in the Botryosphaeriaceae. Stud. Mycol. 55: 235-253. https://doi.org/10.3114/sim.55.1.235
- Das, I. K., Fakrudin, B. and Arora, D. K. 2008. RAPD cluster analysis and chlorate sensitivity of some Indian isolates of Macrophomina phaseolina from sorghum and their relationships with pathogenicity. Microbiol. Res. 163: 215-224. https://doi.org/10.1016/j.micres.2006.05.006
- Earl, D. A. and VonHoldt, B. M. 2012. STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv. Genet. Resour. 4: 359-361. https://doi.org/10.1007/s12686-011-9548-7
- Elmerich, C., Pandey, A. K., Vemula, A., Rathore, A. and Nair, R. M. 2022. Blackgram-Macrophomina phaseolina interactions and identification of novel sources of resistance. Plant Dis. 106: 2911-2919. https://doi.org/10.1094/PDIS-11-21-2588-RE
- Ershad, D. 2009. Fungi of Iran. 3rd ed. Iranian Research Institution of Plant Protection, Tehran, Iran.
- Evanno, G., Regnaut, S. and Goudet, J. 2005. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 14: 2611-2620. https://doi.org/10.1111/j.1365-294X.2005.02553.x
- Farr, D. F. and Rossman, A. Y. 2023. Fungal databases, systematic mycology and microbiology laboratory. ARS, USDA, Washington, DC, USA.
- Farr, D. F., Rossman, A. Y. and Castlebury, L. A. 2024. United States National Fungus Collections Fungus-Host Dataset. URL https://nt.ars-grin.gov/fungaldatabases/ [20 February 2024].
- Food and Agriculture Organization of the United Nations (FAO). 2023. FAOSTAT. URL https://www.fao.org/faostat/en/ [24 September 2023].
- Ghosh, T., Biswas, M. K., Guin, C. and Roy, P. 2018. A review on characterization, therapeutic approaches and pathogenesis of Macrophomina phaseolina. Plant Cell Biotechnol. Mol. Biol. 19: 72-84.
- Goudet, J. 1995. FSTAT (version 1.2): a computer program to calculate F-statistics. J. Hered. 86: 485-486. https://doi.org/10.1093/oxfordjournals.jhered.a111627
- Jacobs, K., Bergdahl, D. R., Wingfield, M. J., Halik, S., Seifert, K. A., Bright, D. E. et al. 2004. Leptographium wingfieldii introduced into North America and found associated with exotic Tomicus piniperda and native bark beetles. Mycol. Res. 108: 411-418. https://doi.org/10.1017/S0953756204009748
- Khamari, B., Hasmi, S. K., Sahoo, J. P. and Samal, K. C. 2023. ISSR marker based genetic diversity assessment and phenotypic characterization in relation to the pathogenicity of Macrophomina phaseolina isolates in sesame. Indian Phytopathol. 76: 753-765. https://doi.org/10.1007/s42360-023-00652-7
- Khamari, B., Hasmi, S. K., Sahoo, J. P., Samal, K. C., Beura, S. K. and Ranasingh, N. 2022. ISSR based genetic diversity and phenotypic characterization in relation to pathogenicity of Macrophomina phaseolina isolated in sesame. AMA. Agric. Mech. Asia Afr. Lat. Am. 53: 7649-7664.
- Khan, A. N., Shair, F., Malik, K., Hayat, Z., Khan, M. A., Hafeez, F. Y. et al. 2017. Molecular identification and genetic characterization of Macrophomina phaseolina strains causing pathogenicity on sunflower and chickpea. Front. Microbiol. 8: 1309.
- Kumar, P. and Dubey, R. C. 2023. Macrophomina phaseolina: ecobiology, pathology and management. Elsevier, San Diego, CA, USA. 368 pp.
- Linhai, W., Yanxin, Z., Donghua, L., Junbin, H., Wenliang, W., Haixia, L. et al. 2011. Variations in the isolates of Macrophomina phaseolina from sesame in China based on amplified fragment length polymorphism (AFLP) and pathogenicity. Afr. J. Microbiol. Res. 5: 5584-5559.
- Lodha, S. and Mawar, R. 2020. Population dynamics of Macrophomina phaseolina in relation to disease management: a review. J. Phytopathol. 168: 1-17. https://doi.org/10.1111/jph.12854
- Londono, V. O. 2022. Evolutionary genome analysis of the charcoal rot fungus Macrophomina phaseolina for improved disease management under climate change. Michigan State University ProQuest Dissertations Publishing, East Lansing, MI, USA.29999309 pp.
- Mahdizadeh, V., Safaie, N. and Goltapeh, E. M. 2012. Genetic diversity of sesame isolates of Macrophomina phaseolina using RAPD and ISSR markers. Trakia J. Sci. 10: 65-74.
- Marquez, N., Giachero, M. L., Declerck, S. and Ducasse, D. A. 2021. Macrophomina phaseolina: general characteristics of pathogenicity and methods of control. Front. Plant Sci. 12: 634397.
- Mayek-Perez, N., Lopez-Castaneda, C., Gonzalez-Chavira, M., GarciaEspinosa, R., Acosta-Gallegos, J., de la Vega, O. M. et al. 2001. Variability of Mexican isolates of Macrophomina phaseolina based on pathogenesis and AFLP genotype. Physiol. Mol. Plant Pathol. 59: 257-264. https://doi.org/10.1006/pmpp.2001.0361
- McDonald, B. A. and Linde, C. 2002. Pathogen population genetics, evolutionary potential, and durable resistance. Annu. Rev. Phytopathol. 40: 349-379.
- McDonald, B. A., Pettway, R. E., Chen, R. S., Boeger, J. M. and Martinez, J. P. 1995. The population genetics of Septoria tritici (teleomorph Mycosphaerella graminicola). Can. J. Bot. 73: 292-301. https://doi.org/10.1139/b95-259
- Meena, B., Indiragandhi, P. and Ushakumari, R. 2018. Screening of sesame (Sesamum indicum L.) germplasm against major diseases. J. Pharmacogn. Phytochem. 7: 1466-1468.
- Meirmans, P. G. and Van Tienderen, P. H. 2004. GENOTYPE and GENODIVE: two programs for the analysis of genetic diversity of asexual organisms. Mol. Ecol. Notes 4: 792-794. https://doi.org/10.1111/j.1471-8286.2004.00770.x
- Min, Y. Y. and Toyota, K. 2019. Occurrence of different kinds of diseases in sesame cultivation in Myanmar and their impact to sesame yield. J. Exp. Agric. Int. 38: 1-9. https://doi.org/10.9734/jeai/2019/v38i430309
- Moslemi, M., Ghaderi, F., Karami, S. and Charehgani, H. 2023. Identification and pathogenicity of Macrophomina species in sesame fields from Iran. Trop. Plant Pathol. Online publication. https://doi.org/10.1007/s40858-023-00601-9.
- Murray, M. G. and Thompson, W. F. 1980. Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res. 8: 4321-4325. https://doi.org/10.1093/nar/8.19.4321
- Nei, M. 1973. Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. U S A 70: 3321-3323. https://doi.org/10.1073/pnas.70.12.3321
- Omar, M. R., Abd-Elsalam, K. A., Aly, A. A., El-Samawaty, A. M. A. and Verreet, J. A. 2007. Diversity of Macrophomina phaseolina from cotton in Egypt: analysis of pathogencity, chlorate phenotypes, and molecular characterization. J. Plant Dis. Protect. 114: 196-204.
- Peakall, R. and Smouse, P. E. 2006. GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol. Ecol. Notes 6: 288-295. https://doi.org/10.1111/j.1471-8286.2005.01155.x
- Pickel, B., Dai, N., Maymon, M., Elazar, M., Tanami, Z., Frenkel, O. et al. 2020. Development of a reliable screening technique for determining tolerance to Macrophomina phaseolina in strawberry. Eur. J. Plant Pathol. 157: 707-718. https://doi.org/10.1007/s10658-020-02051-4
- Pritchard, J. K., Stephens, M. and Donnelly, P. 2000. Inference of population structure using multilocus genotype data. Genetics 155: 945-959. https://doi.org/10.1093/genetics/155.2.945
- Purkayastha, S., Kaur, B., Dilbaghi, N. and Chaudhury, A. 2006. Characterization of Macrophomina phaseolina, the charcoal rot pathogen of cluster bean, using conventional techniques and PCR-based molecular markers. Plant Pathol. 55: 106-116.
- Rayatpanah, S., Dalili, S. A. and Yasari, E. 2012. Diversity of Macrophomina phaseolina (Tassi) Goid based on chlorate phenotypes and pathogenicity. Int. J. Biol. 4: 54-63. https://doi.org/10.5539/ijb.v4n2P54
- Reyes-Franco, M. C., Hernandez-Delgado, S., Beas-Fernandez, R., Medina-Fernandez, M., Simpson, J. and Mayek-Perez, N. 2006. Pathogenic and genetic variability within Macrophomina phaseolina from Mexico and other countries. J. Phytopathol. 154: 447-453. https://doi.org/10.1111/j.1439-0434.2006.01127.x
- Reznikov, S., Chiesa, M. A., Pardo, E. M., De Lisi, V., Bogado, N., Gonzalez, V. et al. 2019. Soybean-Macrophomina phaseolinaspecific interactions and identification of a novel source of resistance. Phytopathology 109: 63-73. https://doi.org/10.1094/PHYTO-08-17-0287-R
- Roy, A., De, R. K. and Ghosh, S. K. 2008. Diseases of best fiber crops and their management. In: Jute and allied fibre updates, eds. by P. G. Karmakar, S. K. Hazra, T. Ramasubramanian, R. K. Mandal, M. K. Sinha and H. S. Sen, pp. 217-241. Central Research Institute for Jute and Allied Fibers, Barrackpore, India.
- Salahlou, R., Safaie, N. and Shams-Bakhsh, M. 2016. Genetic diversity of Macrophomina phaseolina populations, the causal agent of sesame charcoal rot using inter-simple sequence repeat markers. J. Agr. Sci. Tech. 18: 277-287.
- Saleh, A. A., Ahmed, H. U., Todd, T. C., Travers, S. E., Zeller, K. A., Leslie, J. F. et al. 2010. Relatedness of Macrophomina phaseolina isolates from tallgrass prairie, maize, soybean and sorghum. Mol. Ecol. 19: 79-91.
- Sarr, M. P., Ndiaye, M., Groenewald, J. Z. and Crous, P. W. 2014. Genetic diversity in Macrophomina phaseolina, the causal agent of charcoal rot. Phytopathol. Mediterr. 53: 250-268.
- Slatkin, M. 1993. Isolation by distance in equilibrium and nonequilibrium populations. Evolution 47: 264-279. https://doi.org/10.1111/j.1558-5646.1993.tb01215.x
- Stukenbrock, E. H., Banke, S. and McDonald, B. A. 2006. Global migration patterns in the fungal wheat pathogen Phaeosphaeria nodorum. Mol. Ecol. 15: 2895-2904. https://doi.org/10.1111/j.1365-294X.2006.02986.x
- Su, G., Suh, S. O., Schneider, R. W. and Russin, J. S. 2001. Host specialization in the charcoal rot fungus, Macrophomina phaseolina. Phytopathology 91: 120-126.
- Tancic Zivanov, S., Dedic, B., Dimitrijevic, A., Dusanic, N., Jocic, S., Miklic, V. et al. 2019. Analysis of genetic diversity among Macrophomina phaseolina (Tassi) Goid. Isolates from Euro-Asian countries. J. Plant Dis. Prot. 126: 565-573. https://doi.org/10.1007/s41348-019-00260-6
- Teklu, D. H., Shimelis, H. and Abady, S. 2022. Genetic improvement in sesame (Sesamum indicum L.): progress and outlook: a review. Agronomy 12: 2144.
- Vashisht, P., Yadav, N. K., Kumar, R., Jangra, P. and Indora, J. 2023. Management strategies for charcoal rot of sesame: a review. Int. J. Plant Soil. Sci. 35: 2255-2264. https://doi.org/10.9734/ijpss/2023/v35i193777
- Vimal, S. R., Singh, J. S., Arora, N. K. and Singh, S. 2017. Soil-plantmicrobe interactions in stressed agriculture management: a review. Pedosphere 27: 177-192. https://doi.org/10.1016/S1002-0160(17)60309-6
- Wang, L., Yu, J., Zhang, Y., You, J., Zhang, X. and Wang, L. 2021. Sinbase 2.0: an updated database to study multi-omics in Sesamum indicum. Phytopathology 10: 272.
- White, T. J., Bruns, T., Lee, S. J. W. T. and Taylor, J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR Proto cols: A Guide to Methods and Applications, eds. by M. A. Innis, D. H. Gelfand, J. J. Sninsky and T. J. White, pp. 315-322. Academic Press, New York, NY, USA.
- Win, K. T. and Oo, A. Z. 2017. Salt-stress-induced changes in protein profiles in two blackgram (Vigna mungo L.) varieties differing salinity tolerance. Adv. Plants Agric. Res. 7: 00239.
- Yadav, R., Kalia, S., Rangan, P., Pradheep, K., Rao, G. P., Kaur, V. et al. 2022. Current research trends and prospects for yield and quality improvement in sesame, an important oilseed crop. Front. Plant Sci. 13: 863521.
- Yeh, F. C., Yang, R. C. and Boyle, T. 1997. POPGENE, version 1.32 edn. Software Microsoft Window-Based Freeware for Population Genetic Analysis, Edmonton, Canada.
- Yousef, H. 2021. Pathogenic variation and molecular characterization of Macrophomina phaseolina, the cause of sesame charcoal rot. Egypt. J. Phytopathol. 49: 151-165.