Journal of Plant Biotechnology

The Korean Society of Plant Biotechnology (한국식물생명공학회)
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Genome-wide analysis of Solanum lycopersicum L. cyclophilins

  • Khatun, Khadiza (Department of Biotechnology, Patuakhali Science and Technology University) ;
  • Robin, Arif Hasan Khan (Department of Genetics and Plant Breeding, Bangladesh Agricultural University) ;
  • Islam, Md. Rafiqul (Department of Biotechnology, Sher-e-Bangla Agricultural University) ;
  • Jyoti, Subroto Das (Department of Genetics and Plant Breeding, Bangladesh Agricultural University) ;
  • Lee, Do-Jin (Department of Biotechnology, Patuakhali Science and Technology University) ;
  • Kim, Chang Kil (Department of Horticultural Science, Kyungpook National University) ;
  • Chung, Mi-Young (Department of Agricultural Education, Sunchon National University)
  • Received : 2022.03.16
  • Accepted : 2022.03.26
  • Published : 2022.03.31
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Abstract

Cyclophilins (CYPs) are highly conserved ubiquitous proteins belong to the peptidyl prolyl cis/trans isomerase (PPIase) superfamily. These proteins are present in a wide range of organisms; they contain a highly conserved peptidyl-prolyl cis/trans isomerase domain. A comprehensive database survey identified a total of 35 genes localized in all cellular compartments of Solanum lycopersicum L., but largely in the cytosol. Sequence alignment and conserved motif analyses of the SlCYP proteins revealed a highly conserved CLD motif. Evolutionary analysis predicted the clustering of a large number of gene pairs with high sequence similarity. Expression analysis using the RNA-Seq data showed that the majority of the SlCYP genes were highly expressed in mature leaves and blooming flowers, compared with their expression in other organs. This study provides a basis for the functional characterization of individual CYP genes in the future to elucidate their role(s) in protein refolding and long-distance signaling in tomatoes and in plant biology, in general.

Keywords

Acknowledgement

This work was carried out with the support of Sunchon National University Research Fund in 2021 (Grant number: 2021-0293) and "Cooperative Research Program for Agriculture Science & Technology Development (Project No. PJ01485801)" Rural Development Administration, Republic of Korea.

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