한국발생생물학회지:발생과생식 (Development and Reproduction)

  • 제25권3호
  • /
  • Pages.185-192
  • /
  • 2021
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  • 2465-9525(pISSN)
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  • 2465-9541(eISSN)
한국발생생물학회 (The Korean Society of Developmental Biology)
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Genetic Variations within and between Blue Crab (Portunus trituberculatus) Groups

  • Song, Young-Jae (Department of Aquatic Life Medicine, College of Ocean Science and Technology, Kunsan National University) ;
  • Yoon, Jong-Man (Department of Aquatic Life Medicine, College of Ocean Science and Technology, Kunsan National University)
  • 투고 : 2021.06.12
  • 심사 : 2021.09.03
  • 발행 : 2021.09.30
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초록

The five oligonucleotide primers (oligo-primers) turned out a total of 335 fragments (FMs) (52.9%) in the blue crab (Portunus trituberculatus) group alpha and 298 FMs (47.1%) in the crab group beta, with the FM scales range varying from 100 bp to 2,000 bp. The highest band-sharing (BS) value (0.907) was found between individual's no. 19 and no. 20 within the blue crab group beta. Parties in the blue crab group beta (0.601±0.017) had higher BS rates than did parties from the crab group alpha (0.563±0.017) (p<0.05). The polar dendrogram got by the five oligo-primers points out two genetic extents: bundle I (BLUECRAB 01, 03, 04, 05, 06, 08, and 10) and bundle II (BLUECRAB 02, 07, 09. 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, and 22). The OPD-01 primer revealed 22 loci shared by all the examples of the as FMs of 1,000 bp. The oligo-primer OPA-05 made unique loci shared to each group (ULSEG), almost 400 bp and 500 bp, individually, in blue crab group beta. The remaining oligo-primers did not reveal any loci shared by the two crab groups (LSTG). The average number of ULSEG was diverse and 1.6-fold higher in the crab group beta than in the crab group alpha.

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참고문헌

  1. Almeida FS, Sodre LMK, Contel EPB (2003) Population structure analysis of Pimelodus maculatus (Pisces, Siluriformes) from the Tiete and Paranapanema rivers (Brazil). Genet Mol Biol 26:301-305. https://doi.org/10.1590/S1415-47572003000300014
  2. Araneda C, Neira R, Iturra P (2005) Identification of a dominant SCAR marker associated with colour traits in coho salmon (Oncorhynchus kisutch). Aquaculture 247:67-73. https://doi.org/10.1016/j.aquaculture.2005.02.028
  3. Archak S, Gaikwad AB, Gautam D, Rao EVVB, Swamy KRM, Karihaloo JL (2003) Comparative assessment of DNA fingerprinting techniques (RAPD, ISSR and AFLP) for genetic analysis of cashew (Anacardium occidentale L.) accessions of India. Genome 46:362-369. https://doi.org/10.1139/g03-016
  4. Bernardet JF, Vancanneyt M, Matte-Tailliez O, Grisez L, Tailliez P, Bizet C, Nowakowski M, Kerouault B, Swings J (2005) Polyphasic study of Chryseobacterium strains isolated from diseased aquatic animals. Syst Appl Microbiol 28:640-660. https://doi.org/10.1016/j.syapm.2005.03.016
  5. Cho EM, Min GS, Kanwal S, Hyun YS, Park SW, Chung KW (2009) Phylogenetic analysis of mitochondrial DNA control region in the swimming crab, Portunus trituberculatus. Anim Cells Syst 13:305-314. https://doi.org/10.1080/19768354.2009.9647223
  6. Cho KJ (2007) Studies on an artificial feed development for blue crab (Portunus trituberculatus) grower. M.S. Thesis, Kangwon National University, Samcheok, Korea. p 54.
  7. Diaz-Jaimes P, Uribe-Alcocer M (2003) Allozyme and RAPD variation in the eastern Pacific yellowfin tuna (Thunnus albacares). Fish Bull 101:769-777.
  8. Eujayl I, Baum M, Powell W, Erskine W, Pehu E (1998) A genetic linkage map of lentil (Lens sp.) based on RAPD and AFLP markers using recombinant inbred lines. Theor Appl Genet 97:83-89. https://doi.org/10.1007/s001220050869
  9. Jo HS, Park WG, Kwon DH, Cha BY, Im YJ (2013) Distribution and occurrence of swimming crab, Portunus trituberculatus larvae in the mid-western coast of Korea in the Yellow Sea. J Fish Mar Sci Educ 25:991-997. https://doi.org/10.13000/JFMSE.2013.25.4.991
  10. Kang JC (1997) Acute toxicity of hydrogen sulfide to larvae and adults of blue crab Portunus trituberculatus white shrimp Metapenaeus monoceros and prawn Macrobrachium nipponens. J Fish Pathol 10:65-72.
  11. Kim JH, Park GS (2014). Quality characteristics of kimchi added with blue crab. Culin Sci Hosp Res 20:246-259.
  12. Kim YS, Yoon JM (2018) Genetic distances in two Gracilaria species (Gracilariaceae, Rhodophyta) identified by PCR technique. Dev Reprod 22:393-402. https://doi.org/10.12717/DR.2018.22.4.393
  13. Lee HJ, Yoon SJ, Hyun YS, Kim HJ, Hwang SI, Bae JS, Chung KW (2013) Analysis of microsatellite loci for swimming crab Portunus trituberculatus populations in the Korean side of the Yellow Sea. J Life Sci 23:1088-1095. https://doi.org/10.5352/JLS.2013.23.9.1088
  14. Lee H, Yang J (2005) An optimal management model with regard to the swimming crabs in Yellow sea Yeonpyongdo in Korea: Simulation and implications. Int Area Stud Rev 19:423-443.
  15. Liu Z, Li P, Argue BJ, Dunham RA (1998) Inheritance of RAPD markers in channel catfish (Ictalurus punctatus), blue catfish (I. furcatus), and their F1, F2 and backcross hybrids. Anim Genet 29:58-62. https://doi.org/10.1046/j.1365-2052.1998.00284.x
  16. Liu ZJ, Cordes JF (2004) DNA marker technologies and their applications in aquaculture genetics. Aquaculture 238:1-37. https://doi.org/10.1016/j.aquaculture.2004.05.027
  17. Maltagliati F (1998) A preliminary investigation of allozyme genetic variation and population geographical structure in Aphanius fasciatus from Italian brackish-water habitats. J Fish Biol 52:1130-1140. https://doi.org/10.1006/jfbi.1998.0656
  18. Nagarajan M, Haniffa MA, Gopalakrishnan A, Basheer VS, Muneer A (2006) Genetic variability of Channa punctatus populations using randomly amplified polymorphic DNA. Aquac Res 37:1151-1155. https://doi.org/10.1111/j.1365-2109.2006.01539.x
  19. Pyen CK (1970) Propagation of the blue crab, Portunus trituberculatus (MIERS). Bull Korean Fish Soc 3:187-198.
  20. Seo HC, Jang IK, Cho YR, Kim JS, Kim BR (2009) Gonad maturation and spawning of the blue crab, Portunus trituberculatus (Miers, 1876) from the West Sea of Korea. Korean J Fish Aquat Soc 42:48-55.
  21. Wang C, Li SF (2004) Phylogenetic relationships of ornamental (koi) carp, Oujiang color carp and long-fin carp revealed by mitochondrial DNA COII gene sequences and RAPD analysis. Aquaculture 231:83-91. https://doi.org/10.1016/j.aquaculture.2003.10.040
  22. Wasko AP, Martins C, Oliveira C, Senhorini JA, Foresti F (2004) Genetic monitoring of the Amazonian fish matrincha (Brycon cephalus) using RAPD markers: Insights into supportive breeding and conservation programmes. J Appl Ichthyol 20:48-52. https://doi.org/10.1111/j.1439-0426.2004.00479.x
  23. Yamazaki Y, Shimada N, Tago Y (2005) Detection of hybrids between masu salmon Oncorhynchus masou masou and amago salmon O. m. ishikawae occurred in the Jinzu river using a random amplified polymorphic DNA technique. Fish Sci 71:320-326. https://doi.org/10.1111/j.1444-2906.2005.00967.x
  24. Yeon IJ, Lee YS, Song MY, Park WG (2011) Seasonal timing and distribution of Charybdis japonica (Decapoda: Portunidae) larvae off Yeonpyeong-do in the Yellow Sea, Korea. Korea J Fish Aquat Sci 44:162-166. https://doi.org/10.5657/KFAS.2011.44.2.162
  25. Yoon JM (2019a) Genetic distances within-population and between-population of tonguesole, Cynoglossus spp. identified by PCR technique. Dev Reprod 23:297-304. https://doi.org/10.12717/dr.2019.23.3.297
  26. Yoon JM (2019b) Genetic distances between two echiuran populations discriminated by PCR. Dev Reprod 23:377-384. https://doi.org/10.12717/DR.2019.23.4.377
  27. Yoon JM (2020) Genetic distances of rainbow trout and masu salmon as determined by PCR-based analysis. Dev Reprod 24:241-248. https://doi.org/10.12717/DR.2020.24.3.241
  28. Yoon JM, Kim JY (2010) Genetic differences and geographic variation in cuttle fish (Sepia esculenta Hoyle). Dev Reprod 14:163-170.
  29. Yoon JM, Kim YH, Kim S (2006) Genetic variation in geographic crayfish (Cambaroides similis) populations. J Fish Pathol 19:141-153.
  30. Yoon JM, Park KI, Choi SH (2012) Variation of shell color in three geographic white clam (Meretrix lusoria) populations of the Yellow Sea. Dev Reprod 16:47-51.
  31. Yue GH, Orban L (2005) A simple and affordable method for high-throughput DNA extraction from animal tissues for polymerase chain reaction. Electrophoresis 26:3081-3083. https://doi.org/10.1002/elps.200410411