DOI QR코드

DOI QR Code

Effect of Soil Properties on Soil Fungal Community in First and Continuous Cultivation Fields of Cnidium officinale Makino

천궁 초작과 연작 재배지의 토양특성이 토양 곰팡이 군집에 미치는 영향

  • Kim, Ki Yoon (Forest Medicinal Resources Research Center, NIFOS) ;
  • Han, Kyeung Min (Forest Medicinal Resources Research Center, NIFOS) ;
  • Kim, Hyun Jun (Forest Medicinal Resources Research Center, NIFOS) ;
  • Kim, Chung Woo (Environment-Friendly Research Division, Chungcheongbukdo Agricultural Research and Extension Services) ;
  • Jeon, Kwon Seok (Forest Medicinal Resources Research Center, NIFOS) ;
  • Jung, Chung Ryul (Forest Medicinal Resources Research Center, NIFOS)
  • 김기윤 (국립산림과학원 산림약용자원연구소) ;
  • 한경민 (국립산림과학원 산림약용자원연구소) ;
  • 김현준 (국립산림과학원 산림약용자원연구소) ;
  • 김충우 (충북농업기술원 친환경연구과) ;
  • 전권석 (국립산림과학원 산림약용자원연구소) ;
  • 정충렬 (국립산림과학원 산림약용자원연구소)
  • Received : 2020.03.27
  • Accepted : 2020.06.23
  • Published : 2020.06.30

Abstract

Background: This study investigated the effects of soil properties on the soil fungal community in first and continuous cultivation areas of Cnidium officinale Makino. Methods and Results: The soil fungal community was analyzed for relative abundance and principal coordinate analysis (PCoA) was conducted using Illumina MiSeq sequencing. The correlation between the soil chemical properties and the soil fungal community was assessed with distance-based linear models (DISTLM). The soil fungal community showed distinct clusters consisting in the continuous cultivation area of C. officinale Makino. PCoA and DISTLM indicated that soil pH, calcium, and available P2O5 significantly affected the soil fungal community in the cultivation area of C. officinale Makino. In addition, considering 5 different pathogenic fungi the relative abundance of Fusarium in the continuous cultivation area was significantly higher compared to that in the first cultivation area of C. officinale Makino. Conclusions: This study is important because it has determinined the effects of soil properties on the soil fungal community in both first and continuous cultivation areas of C. officinale Makino. Moreover, these results will be helpful to investigate the cause of continuous cropping obstacle in C. officinale Makino by examining the changes of soil fungal community.

Keywords

References

  1. Alami MM, Xue J, Ma Y, Zhu D, Abbas A, Gong Z and Wang X. (2020). Structure, function, diversity and composition of fungal communities in rhizospheric soil of Coptis chinensis Franch under a successive cropping system. Plants. 9:244. https://www.mdpi.com/2223-7747/9/2/244/htm (cited by 2020 March 18). https://doi.org/10.3390/plants9020244
  2. Atlas R and Bartha R. (1998). Microbial ecology: Fundamentals and application. (4th ed.). Benjamin and Cummings Science Publishing. San Francisco, CA, USA. p.322-323.
  3. Avidano L, Gamalero E, Cossa GP and Carraro E. (2005). Characterization of soil health in an Italian polluted site by using microorganisms as bioindicators. Applied Soil Ecology. 30:21-33. https://doi.org/10.1016/j.apsoil.2005.01.003
  4. Bai L, Cui J, Jie W and Cai B. (2015). Analysis of the community compositions of rhizosphere fungi in soybeans continuous cropping fields. Microbiological Research. 180:49-56. https://doi.org/10.1016/j.micres.2015.07.007
  5. Baik SY, Jang KS, Choi YH, Kim JC and Choi GJ. (2011). Resistance degree of radish cultivars to Fusarium oxysporum f. sp. raphani according to several conditions. Korean Journal of Horticultural Science and Technology. 29:48-52.
  6. Bell TH, Yergeau E, Maynard C, Juck D, Whyte LG and Greer CW. (2013). Predictable bacterial composition and hydrocarbon degradation in Arctic soils following diesel and nutrient disturbance. ISME Journal. 7:1200-1210. https://doi.org/10.1038/ismej.2013.1
  7. Berg G and Smalla K. (2009). Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere. FEMS Microbiology Ecology. 68:1-13. https://doi.org/10.1111/j.1574-6941.2009.00654.x
  8. Bonghwa Highand Herbs Experimental Station(BHHES). (2012). The study on highland herbs. Bonghwa Highand Herbs Experimental Station. Bonghwa, Korea. p.26-27.
  9. Bridge P and Spooner B. (2001). Soil fungi: Diversity and detection. Plant and Soil. 232:147-154. https://doi.org/10.1023/A:1010346305799
  10. Chen M, Li X, Yang Q, Chi X, Pan L, Chen N, Yang Z, Wang T, Wang M and Yu S. (2012). Soil eukaryotic microorganism succession as affected by continuous cropping of peanutpathogenic and beneficial fungi were selected. PLoS One. 7:e40659. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3393692/ (cited by 2020 March 18). https://doi.org/10.1371/journal.pone.0040659
  11. de Forest JL and Scott LG. (2010). Available organic soil phosphorus has an important influence on microbial community composition. Soil Science Society in American Journal. 74: 2059-2066. https://doi.org/10.2136/sssaj2009.0426
  12. Dong L, Xu J, Feng G, Li X and Chen S. (2016). Soil bacterial and fungal community dynamics in relation to Panax notoginseng death rate in a continuous cropping system. Scientific Reports. 6:31802. https://www.nature.com/articles/ srep31802 (cited by 2020 March 18). https://doi.org/10.1038/srep31802
  13. Gomes NCM, Fagbola O, Costa R, Rumjanek NG, Buchner A, Mendona-Hagler L and Smalla K. (2003). Dynamics of fungal communities in bulk and maize rhizosphere soil in the tropics. Applied and Environmental Microbiology. 69:3758-3766. https://doi.org/10.1128/AEM.69.7.3758-3766.2003
  14. Gustafson DJ and Casper BB. (2004). Nutrient addition affects AM fungal performance and expression of plant/fungal feedback in three serpentine grasses. Plant and Soil. 259:9-17. https://doi.org/10.1023/B:PLSO.0000020936.56786.a4
  15. Hannula SE, de Boer W and van Veen J. (2012). A 3-year study reveals that plant growth stage, season and field site affect soil fungal communities while cultivar and GM-trait have minor effects. PLoS ONE. 7:e33819. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3328480/ (cited by 2020 March 18). https://doi.org/10.1371/journal.pone.0033819
  16. Jeong JH, Lee KS and So JD. (1991). Effects of phytotoxins on change of pH in the continuous cropping soil. Korean Journal of Soil Science and Fertilizer. 24:17-21.
  17. Jung CR, Jeong DH, Park HW, Kim HJ, Jeon KS and Yoon JB. (2019). Molecular identification of thrips in two medicinal crops, Cnidium officinale Makino and Ligusticum chuanxiong Hort. Korean Journal of Medicinal Crop Science. 27:17-23. https://doi.org/10.7783/KJMCS.2019.27.1.17
  18. Jung YJ, Nou IS, Kim YK and Kang KK. (2015). Effect of green manure crops incorporation for reduction of Pythium zingiberum in ginger continuous cultivation. Korean Journal of Plant Resource. 28:271-278. https://doi.org/10.7732/kjpr.2015.28.2.271
  19. Kang SW, Yeon BY, Hyeon GS, Bae YS, Lee SW and Seong NS. (2007). Changes of soil chemical properties and root injury ratio by progress years of post-harvest in continuous cropping soils of ginseng. Korean Journal of Medicinal Crop Science. 15:157-161.
  20. Kim CH and Kim YK. (2002). Present status of soilborne disease incidence and scheme for its integrated management in Korea. Research in Plant Disease. 8:146-161. https://doi.org/10.5423/RPD.2002.8.3.146
  21. Kim DR, Gang GH, Jung HJ, Hong SW and Kwak YS. (2016). Effect of culture conditions on the chemical control efficacy of root rot disease of Platycodon grandiflorum and Codonopsis lanceolata. Korean Journal of Pesticide Science. 20:165-171. https://doi.org/10.7585/kjps.2016.20.2.165
  22. Kim JG, Park HR, Yang KW, Kim SS, Kwon CH, Jeong YH and Hur JH. (2011). Processing and reducing factors of difenoconazole during ginseng processing. Korean Journal of Food Science and Technology. 43:263-270. https://doi.org/10.9721/KJFST.2011.43.3.263
  23. Kim KY, Han KM, Kim HJ, Jeon KS, Kim CW and Jung CR. (2020). The study of soil chemical properties and soil bacterial communities on the cultivation systems of Cnididum officinale Makino. Korean Journal of Environmental Agriculture. 39:1-9. https://doi.org/10.5338/KJEA.2020.39.1.1
  24. Kim KY, Samaddar S, Chatterjee P, Krishnamoorthy R, Jeon SY and Sa TM. (2019a). Structural and functional responses of microbial community with respect to salinity levels in a coastal reclamation land. Applied Soil Ecology. 137:96-105. https://doi.org/10.1016/j.apsoil.2019.02.011
  25. Kim KY, Um YR, Jeong DH, Kim HJ, Kim MJ and Jeon KS. (2019b). Study on the correlation between the soil bacterial community and growth characteristics of wild-simulated ginseng (Panax ginseng C. A. Meyer). Korean Journal of Environmental Biology. 37:380-388. https://doi.org/10.11626/KJEB.2019.37.3.380
  26. Kim ST, Ahn MI and Yun SC. (2010). Evaluation of anthracnose forecaster of an integrated pest management system on hot pepper in the fields. Research in Plant Disease. 16:66-73. https://doi.org/10.5423/RPD.2010.16.1.066
  27. Kwon CS and Lee SG. (2002). Occurrence and ecological characteristics of red pepper Anthracnose. Research in Plant Disease. 8:120-123. https://doi.org/10.5423/RPD.2002.8.2.120
  28. Lauber CL, Strickland MS, Bradford MA and Fierer N. (2008). The influence of soil properties on the structure of bacterial and fungal communities across land-use types. Soil Biology and Biochemistry. 40:2407-2415. https://doi.org/10.1016/j.soilbio.2008.05.021
  29. Lee SG. (2004). Fusarium species associated with ginseng(Panax ginseng) and their role in the root-rot of ginseng plant. Research in Plant Disease. 10:248-259. https://doi.org/10.5423/RPD.2004.10.4.248
  30. Lee SW, Lee SH, Seo MW, Park KH and Jang IB. (2018). Effects of irrigation and ginseng root residue on root rot disease of 2-years-old ginseng and soil microbial community in the continuous cropping soil of ginseng. Korean Journal of Medicinal Crop Science. 26:345-353. https://doi.org/10.7783/KJMCS.2018.26.5.345
  31. Lee SW, Park KH, Lee SH, Jang IB and Jin ML. (2017). Effect of green manure crop cultivation on soil chemical properties and root rot disease in continuous cropping field of ginseng. Korean Journal of Medicinal Crop Science. 25:1-9. https://doi.org/10.7783/KJMCS.2017.25.1.1
  32. Li Y, Li Z, Arafat Y and Lin X. (2020). Studies on fungal communities and functional guilds shift in tea continuous cropping soils by high-throughput sequencing. Annals of Microbiology. 70:7. https://doi.org/10.1186/s13213-020-01555-y (cited by 2019 May 18).
  33. Lim KB, Lee HJ, Ahn BS, Sung BR and Shin JS. (2005). Introducing strip cropping for decreasing the damage of the continuous corn cultivation. Journal of the Korean Society of Grassland Science. 25:97-104. https://doi.org/10.5333/KGFS.2005.25.2.097
  34. Manici LM, Kelderer M, Franke-Whittel IH, Rühmer T, Baab G, Nicoletti F, Caputo F, Topp A, Insam H and Naef A. (2013). Relationship between root-endophytic microbial communities and replant disease in specialized apple growing areas in Europe. Applied Soil Ecology. 72:207-214. https://doi.org/10.1016/j.apsoil.2013.07.011
  35. Mazzola M and Manici LM. (2012). Apple replant disease: Role of microbial ecology in cause and control. Annual Review of Phytopathology. 50:45-65. https://doi.org/10.1146/annurev-phyto-081211-173005
  36. Ministry of Agriculture, Food and Rural Affairs(MAFRA). (2018). Production performance of industrial drops. Ministry of Agriculture, Food and Rural Affairs. Sejong, Korea. p.8-22.
  37. Mondal F, Asaduzzaman, Kobayashi Y, Ban T and Asao T. (2013). Recovery from autotoxicity in strawberry by supplementation of amino acids. Scientia Horticulturae. 164:137-144. https://doi.org/10.1016/j.scienta.2013.09.019
  38. Monfort-Salvador I, García-Montero LG and Grande MA. (2015). Impact of calcium associated to calcareous amendments on ectomycorrhizae in forests: A review. Journal of Soil Science and Plant Nutrition. 15:217-231.
  39. Moon JY, Min BK, Shin JH, Choi YC, Cho HJ, Lee YH, Lee JG and Heo JY. (2018). Effect of curing treatments on the Fusarium Wilt(Fusarium oxysporum) of Sweet potato(Ipomoea batatas L.). Korean Journal of Soil Science and Fertilizer. 51:247-254. https://doi.org/10.7745/KJSSF.2018.51.3.247
  40. Nam MH, Kang YJ, Lee IH, Kim HG and Chun CH. (2011). Infection of daughter plants by Fusarium oxysporum f. sp. fragariae through runner propagation of strawberry. Korean Journal of Horticultural Science and Technology. 29:273-277.
  41. Nayyar A, Harmel C, Lafond G, Gossen BD, Hason K and Germida J. (2012). Soil microbial quality associated with yield reduction in continuous-pea. Applied Soil Ecology. 43:115-121. https://doi.org/10.1016/j.apsoil.2009.06.008
  42. Oh YJ, Seo HR, Choi YM and Jung DS. (2010). Evaluation of antioxidant activity of the extracts from the aerial parts of Cnidium officinale Makino. Korean Journal of Medicinal Crop Science. 18:373-378.
  43. Park JC, Noh TH, Kim MJ, Lee SB, Park CS, Kang CS, Lee JJ and Kim TS. (2010). Effect of cropping system on disease incidence by soil-borne Bymovirus in barley and on density of the vector, Polymyxa graminis. Research in Plant Disease. 16:115-120. https://doi.org/10.5423/RPD.2010.16.2.115
  44. Park JH, Seo YJ, Choi SY, Zhang YS, Ha SK and Kim JE. (2011). Soil physico-chemical properties and characteristics of microbial distribution in the continuous cropped field with Paeonia lactiflora. Korean Journal of Soil Science and Fertilizer. 44:841-846. https://doi.org/10.7745/KJSSF.2011.44.5.841
  45. Park MS, Jang KS, Choi YH, Kim JC and Choi GJ. (2013). Simple mass-screening methods for resistance of tomato to Fusarium oxysporum f. sp. lycopersici. Korean Journal of Horticultural Science and Technology. 31:110-116. https://doi.org/10.7235/hort.2013.12134
  46. Pettersson M. (2004). Factors affecting the rates of change in soil bacterial communities. Ph. D. Thesis. Lund University. Lund, Sweden. p.1-43.
  47. Polme S, Bahram M, Yamanaka T, Nara K, Dai YC, Grebenc T, Kraigher H, Toivonen M, Wang PH, Matsuda Y, Naadel T, Kennedy PG, Koljalg U and Tedersoo L. (2013). Biogeography of ectomycorrhizal fungi associated with alders (Alnus spp.) in relation to biotic and abiotic variables at the global scale. New Phytologist. 198:1239-1249. https://doi.org/10.1111/nph.12170
  48. Rousk J, Baath E, Brookes PC, Lauber CL, Lozupone C, Caporaso JG, Knight R and Fierer N. (2010). Soil bacterial and fungal communities across a pH gradient in an arable soil. The ISME Journal. 4:1340-1351. https://doi.org/10.1038/ismej.2010.58
  49. Rural Development Administration(RDA). (2013). Analysis manual of comprehensive examination laboratory(soil, plant, water and liquid manure). Rural Development Administration. Suwon, Korea. p.31-53.
  50. Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ and Weber CF. (2009). Introducing mothur: Open source, platform-independent, community-supported software for describing and comparing microbial communities. Applied and Environmental Microbiology. 75:7537-7541. https://doi.org/10.1128/AEM.01541-09
  51. Seo YJ, Nam HH, Jang WC, Kim JS and Lee BY. (2018). Effect of meteorological factors on evapotranspiration change of Cnidium officinale Makino. Korean Journal of Agricultural and Forest Meteorology. 20:366-375. https://doi.org/10.5532/KJAFM.2018.20.4.366
  52. Shin JH, Yun BD, Kim HJ, Kim SJ and Chung DY. (2012). Soil environment and soil-borne plant pathogen causing root rot disease of ginseng. Korean Journal of Soil Science and Fertilizer. 45:370-376. https://doi.org/10.7745/KJSSF.2012.45.3.370
  53. Singh BK, Munro S, Reid E, Ord B, Potts M, Paterson E and Millard P. (2006). Investigating microbial community structure in soils by physiological, biochemical and molecular fingerprinting methods. European Journal of Soil Science. 57:72-82. https://doi.org/10.1111/j.1365-2389.2005.00781.x
  54. Tan Y, Cui Y, Li H, Kuang A, Li X, Wei Y and Ji X. (2017). Rhizospheric soil and root endogenous fungal diversity and composition in response to continuous Panax notoginseng cropping practices. Microbiological Research. 194:10-19. https://doi.org/10.1016/j.micres.2016.09.009
  55. Tang J, Xue Z, Daroch M and Ma J. (2015). Impact of continuous Salvia miltiorrhiza cropping on rhizosphere actinomycetes and fungi communities. Annals of Microbiology. 65:1267-1275. https://doi.org/10.1007/s13213-014-0964-2
  56. Ullah S, Ai C, Ding W, Jiang R, Zhao S, Zhang J, Zhou W, Hou Y and He P. (2019). The response of soil fungal diversity and community composition to long-term fertilization. Applied Soil Ecology. 140:35-41. https://doi.org/10.1016/j.apsoil.2019.03.025
  57. Walkley A and Black IA. (1934). An examination of the Degtjareff method for determining soil organic matter, and a proposed modification of the chromic acid titration method. Soil Science. 37:29-38. https://doi.org/10.1097/00010694-193401000-00003
  58. Wei X, Wang X, Cao P, Gao Z, Chen AJ and Han J. (2020). Microbial community changes in the rhizosphere soil of healthy and rusty Panax ginseng and discovery of pivotal fungal genera associated with rusty roots. BioMed Research International. 2020:8018525. https://www.hindawi.com/journals/bmri/2020/8018525/ (cited by 2020 March 18).
  59. Wu L, Chen J, Wu H, Wang J, Wu Y, Lin S, Khan MU, Zhang Z and Lin W. (2016). Effects of consecutive monoculture of Pseudostellaria heterophylla on soil fungal community as determined by pyrosequencing. Scientific Reports. 6:26601. https://www.nature.com/articles/srep26601 (cited by 2020 Jan 7). https://doi.org/10.1038/srep26601
  60. Wu L, Wang H, Zhang Z, Lin R, Zhang Z and Lin W. (2011). Comparative metaproteomic analysis on consecutively Rehmannia glutinosa-monocultured rhizosphere soil. PLoS ONE. 6:e20611. https://doi.org/10.1371/journal.pone.0020611 (cited by 2020 Jan 22).
  61. Wu Y, Zeng J, Zhu Q, Zhang Z and Lin X. (2017). pH is the primary determinant of the bacterial community structure in agricultural soils impacted by polycyclic aromatic hydrocarbon pollution. Scientific Reports. 7:40093. https://www.nature.com/articles/srep40093 (cited by 2020 Jan 2). https://doi.org/10.1038/srep40093
  62. Wu Z, Liu Q, Li Z, Cheng W, Sun J, Guo Z, Li Y, Zhou J, Meng D, Li H, Lei P and Yin H. (2018). Environmental factors shaping the diversity of bacterial communities that promote rice production. BMC Microbiology. 18:51. https://bmcmicrobiol.biomedcentral.com/articles/10.1186/s12866-018-1174-z (cited by 2020 Feb 3).
  63. Xiong W, Zhao Q, Zhao J, Xun W, Li R, Zhang R, Wu H and Shen Q. (2015). Different continuous cropping spans significantly affect microbial community membership and structure in a vanilla-grown soil as revealed by deep pyrosequencing. Microbial Ecology. 70:209-218. https://doi.org/10.1007/s00248-014-0516-0
  64. Yang R, Mo Y, Liu C, Wang Y, Ma J, Zhang Y, Li H and Zhang X. (2016). The effects of cattle manure and garlic rotation on soil under continuous cropping of watermelon (Citrullus lanatus L.). PLoS ONE 11:e0156515. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4892587/ (cited by 2020 Jan 22). https://doi.org/10.1371/journal.pone.0156515
  65. Yang T, Tedersoo L, Soltis PS, Soltis DE, Gilbert JA, Sun M, Shi Y, Wang Y, Li Y, Zhang J, Chen Z, Lin H, Zhao H, Fu C and Chu H. (2019). Phylogenetic imprint of woody plants on the soil mycobiome in natural mountain forests of eastern China. ISME Journal. 13:686-697. https://doi.org/10.1038/s41396-018-0303-x
  66. Yao HY, Jiao XD and Wu FZ. (2006). Effects of continuous cucumber cropping and alternative rotations under protected cultivation on soil microbial community diversity. Plant and Soil. 284:195-203. https://doi.org/10.1007/s11104-006-0023-2
  67. Yao Q, Xu Y, Liu X, Liu J, Huang X, Yang W, Yang Z, Lan L, Zhou J and Wang G. (2019). Dynamics of soil properties and fungal community structure in continuous-cropped alfalfa fields in Northeast China. PeerJ. 7:e7127. https://peerj.com/articles/7127/ (cited by 2020 March 18). https://doi.org/10.7717/peerj.7127
  68. Yergeau E, Lawrence JR, Sanschagrin S, Walser MJ, Korber DR and Greer CW. (2012). Next-generation sequencing of microbial communities in the Athabasca River and its tributaries in relation to oil sands mining activities. Applied and Environmental Microbiology. 78:7626-7637. https://doi.org/10.1128/AEM.02036-12
  69. Zhang M, Wang N, Zhang J, Hu Y, Cai D, Guo J, Wu D and Sun G. (2019a). Soil physicochemical properties and the rhizosphere soil fungal community in a Mulberry(Morus alba L.) / Alfalfa(Medicago sativa L.) intercropping system. Forests. 10:167. https://www.mdpi.com/1999-4907/10/2/167 (cited by 2020 March 18). https://doi.org/10.3390/f10020167
  70. Zhang T, Wang Z, Lv X, Li Y and Zhuang L. (2019b). Highthroughput sequencing reveals the diversity and community structure of rhizosphere fungi of Ferula Sinkiangensis at different soil depths. Scientific Reports. 9:6558. https://doi.org/10.1038/s41598-019-43110-z (cited by 2020 May 18).
  71. Zhou X and Wu F. (2012). Dynamics of the diversity of fungal and Fusarium communities during continuous cropping of cucumber in the greenhouse. FEMS Microbiology Ecology. 80:469-478. https://doi.org/10.1111/j.1574-6941.2012.01312.x
  72. Zhou X, Gao D, Liu J, Qiao P, Zhou X, Lu H, Wu X, Liu D, Jin X and Wu F. (2014). Changes in rhizosphere soil microbial communities in a continuously monocropped cucumber(Cucumis sativus L.) system. European Journal of Soil Biology. 60:1-8. https://doi.org/10.1016/j.ejsobi.2013.10.005
  73. Zhou X, Yu G and Wu F. (2012). Soil phenolics in a continuously mono-cropped cucumber(Cucumis sativus L.) system and their effects on cucumber seedling growth and soil microbial communities. European Journal of Soil Science. 63:332-340. https://doi.org/10.1111/j.1365-2389.2012.01442.x