참고문헌
- Buckingham, S.D., Esmaeili, B., Wood, M., Sattelle, D.B., RNA interference: from model organisms towards therapy for neural and neuromuscular disorders. Hum. Mol. Genet., 13(2), R275-R288 (2004). https://doi.org/10.1093/hmg/ddh224
- Cooper, T.A., Wan, L., Dreyfuss, G., RNA and disease. Cell, 136(4), 777-793 (2009). https://doi.org/10.1016/j.cell.2009.02.011
- Gottesman, S., Stealth regulation: biological circuits with small RNA switches. Genes & Dev., 16(22), 2829-2842 (2002). https://doi.org/10.1101/gad.1030302
- Grosshans, H., Slack, F.J., Micro-RNAs: small is plentiful. J. Cell. Biol., 156(1), 17-22 (2002). https://doi.org/10.1083/jcb.200111033
- Masse, E., Majdalani, N., Gottesman, S., Regulatory roles for small RNAs in bacteria. Curr. Opin. Microbiol., 6(2), 120-124 (2003). https://doi.org/10.1016/S1369-5274(03)00027-4
- Wassarman, K.M., Small RNAs in bacteria: diverse regulators of gene expression in response to environmental changes. Cell, 109(2), 141-144 (2002). https://doi.org/10.1016/S0092-8674(02)00717-1
- Paudel, D.B., Ghoshal, B., Jossey, S., Ludman, M., Fatyol, K., Sanfacon, H., Expression and antiviral function of ARGONAUTE 2 in Nicotiana benthamiana plants infected with two isolates of tomato ringspot virus with varying degrees of virulence. Virology, 524, 127-139 (2018). https://doi.org/10.1016/j.virol.2018.08.016
- Kim, T.K., Hemberg, M., Gray, J.M., Enhancer RNAs: a class of long noncoding RNAs synthesized at enhancers. Cold. Spring. Harb. Perspect. Biol., 7(1), a018622 (2015). https://doi.org/10.1101/cshperspect.a018622
- Tsatsaronis, J.A., Franch-Arroyo, S., Resch, U., Charpentier, E., Extracellular vesicle RNA: a universal mediator of microbial communication?. Trends. Microbiol., 26(5), 401-410 (2018). https://doi.org/10.1016/j.tim.2018.02.009
- Whitchurch, A.K., Gene expression microarrays. IEEE Potentials, 21(1), 30-34 (2002). https://doi.org/10.1109/45.985325
- Pinchuk, I.V., Morris, K.T., Nofchissey, R.A., Earley, R.B., Wu, J.Y., Ma, T.Y., Beswick, E.J., Stromal cells induce Th17 during Helicobacter pylori infection and in the gastric tumor microenvironment. PLoS One, 8(1), e53798 (2013). https://doi.org/10.1371/journal.pone.0053798
- Montanaro, L., Trere, D., Derenzini, M., The emerging role of RNA polymerase I transcription machinery in human malignancy: a clinical perspective. Oncotarget., 6, 909 (2013)
- Pavankumar, A.R., Ayyappasamy, S.P., Sankaran, K., Small RNA fragments in complex culture media cause alterations in protein profiles of three species of bacteria. Biotechniques, 52(3), 167-172 (2012). https://doi.org/10.2144/000113819
- Vlassov, V.V., Laktionov, P.P., Rykova, E.Y., Extracellular nucleic acids. Bioessays, 29(7), 654-667 (2007). https://doi.org/10.1002/bies.20604
- Vunjak-Novakovic, G., Altman, G., Horan, R., Kaplan, D.L., Tissue engineering of ligaments. Annu. Rev. Biomed. Eng., 6, 131-156 (2004). https://doi.org/10.1146/annurev.bioeng.6.040803.140037
- Eigenbrod, T., Dalpke, A.H., Bacterial RNA: an underestimated stimulus for innate immune responses. J. Immunol., 195(2), 411-418 (2015). https://doi.org/10.4049/jimmunol.1500530
- Vanaja, S.K., Rathinam, V.A., Atianand, M.K., Kalantari, P., Skehan, B., Fitzgerald, K.A., Leong, J.M., Bacterial RNA: DNA hybrids are activators of the NLRP3 inflammasome. Proc of the Nat. Aca. Sci., 111(21), 7765-7770 (2014). https://doi.org/10.1073/pnas.1400075111
- Sander, L.E., Davis, M.J., Boekschoten, M.V., Amsen, D., Dascher, C.C., Ryffel, B., ... & Blander, J.M., Detection of prokaryotic mRNA signifies microbial viability and promotes immunity. Nature, 474(7351), 385-389 (2011). https://doi.org/10.1038/nature10072
- Dorward, D.W., Garon, C.F., Judd, R.C., Export and intercellular transfer of DNA via membrane blebs of Neisseria gonorrhoeae. J. Bacteriol., 171(5), 2499-2505 (1989). https://doi.org/10.1128/jb.171.5.2499-2505.1989
- Nishimura, K., Hirokawa, Y.S., Mizutani, H., Shiraishi, T., Reduced heterochromatin protein 1-beta (HP1β) expression is correlated with increased invasive activity in human melanoma cells. Anticancer. Res., 26(6B), 4349-4356(2006).
- Ando, T., Screening effect and impurity scattering in monolayer graphene. J. Phys. Soc. Jpn., 75(7), 074716-074716 (2006). https://doi.org/10.1143/JPSJ.75.074716
- Renelli, M., Matias, V., Lo, R.Y., Beveridge, T.J., DNA-containing membrane vesicles of Pseudomonas aeruginosa PAO1 and their genetic transformation potential. Microbiology, 150(7), 2161-2169 (2004). https://doi.org/10.1099/mic.0.26841-0
- Obregon-Henao, A., Duque-Correa, M.A., Rojas, M., Garcia, L.F., Brennan, P.J., Ortiz, B.L., Belisle, J.T., Stable extracellular RNA fragments of Mycobacterium tuberculosis induce early apoptosis in human monocytes via a caspase-8 dependent mechanism. PLoS One, 7(1), e29970 (2012). https://doi.org/10.1371/journal.pone.0029970
- Biller, S.J., Berube, P.M., Berta-Thompson, J.W., Kelly, L., Roggensack, S.E., Awad, L., ...& Moore, L.R., Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus. Sci. Data., 1(1), 1-11. (2014)
- Ghosal, A., Upadhyaya, B.B., Fritz, J.V., Heintz?Buschart, A., Desai, M.S., Yusuf, D., Wilmes, P., The extracellular RNA complement of Escherichia coli. Microbiologyopen, 4(2), 252-266 (2015). https://doi.org/10.1002/mbo3.235
- Grohmann, E., Christie, P.J., Waksman, G., Backert, S., Type IV secretion in Gram-negative and Gram?positive bacteria. Mol. mic., 107(4), 455-471 (2018). https://doi.org/10.1111/mmi.13896
- Han, Y., Wang, F., Shao, L., Huang, P., Xu, Y., LncRNA TUG1 mediates lipopolysaccharide-induced proliferative inhibition and apoptosis of human periodontal ligament cells by sponging miR-132. Acta. Biochim. Biophys. Sin., 51(12), 1208-1215 (2019).
- Paudel, D.B., Ghoshal, B., Jossey, S., Ludman, M., Fatyol, K., Sanfacon, H., Expression and antiviral function of ARGONAUTE 2 in Nicotiana benthamiana plants infected with two isolates of tomato ringspot virus with varying degrees of virulence. Virology, 524, 127-139. (2018) https://doi.org/10.1016/j.virol.2018.08.016
- Habier, J., May, P., Heintz-Buschart, A., Ghosal, A., Wienecke-Baldacchino, A.K., Nolte, E.N., Paul, W., Fritz, J.V., 2018. Extraction and analysis of RNA isolated from pure bacteria-derived outer membrane vesicles. In Bacterial Regulatory RNA. Humana Press, New York, NY, USA, pp. 213-230.
- Yu, J., Xu, Q.G., Wang, Z.G., Yang, Y., Zhang, L., Ma, J.Z., Sun, S.H., Yang, F., Zhou, W.P. Circular RNA cSMARCA5 inhibits growth and metastasis in hepatocellular carcinoma. J. of hep., 68(6), 1214-1227 (2018). https://doi.org/10.1016/j.jhep.2018.01.012
- Kuehn, M.J., Kesty, N.C., Bacterial outer membrane vesicles and the host-pathogen interaction. Genes. Dev., 19(22), 2645-2655 (2005). https://doi.org/10.1101/gad.1299905
- Dubnau, D., DNA uptake in bacteria. Annu. Rev. Microbiol., 53(1), 217-244 (1999). https://doi.org/10.1146/annurev.micro.53.1.217
- Nayak, M., Perumal, A.S., Nicolau, D.V., van Delft, F.C., Bacterial motility behaviour in sub-ten micron wide geometries. In 2018 16th IEEE International New Circuits and Systems Conference (NEWCAS) (pp. 382-384) (2018).
- Holmqvist, E., Vogel, J., RNA-binding proteins in bacteria. Nat. Rev. Microbio., 16, 601-615 https://doi.org/10.1038/s41579-018-0049-5 (2018).
- Kuipers, M.E., Hokke, C.H., Smits, H.H., Pathogen-derived extracellular vesicle-associated molecules that affect the host immune system: an overview. Front. Microbiol., 9, 2182 (2018). https://doi.org/10.3389/fmicb.2018.02182
- Mug-Opstelten, D., Witholt, B., Preferential release of new outer membrane fragments by exponentially growing Escherichia coli. Biochimica et Biophysica Acta (BBA)-Biomembranes, 508(2), 287-295 (1978). https://doi.org/10.1016/0005-2736(78)90331-0
- Yaganza, E.S., Rioux, D., Simard, M., Arul, J., Tweddell, R.J., Ultrastructural alterations of Erwinia carotovora subsp. atroseptica caused by treatment with aluminum chloride and sodium metabisulfite. J. Appl. Environ., 70(11), 6800-6808 (2004). https://doi.org/10.1128/AEM.70.11.6800-6808.2004
- Zhou, K., Doyle, J.C., Essentials of robust control (104). Upper Saddle River, NJ: Prentice hall (1998).
- Hoekstra, D., van der Laan, J.W., de Leij, L., Witholt, B., Release of outer membrane fragments from normally growing Escherichia coli. Biochim. Biophys. Acta. (BBA)-Biomembr., 455(3), 889-899 (1976). https://doi.org/10.1016/0005-2736(76)90058-4
- Gamazo, C., Moriyon, I., Release of outer membrane fragments by exponentially growing Brucella melitensis cells. Infect. Immun., 55(3), 609-615 (1987). https://doi.org/10.1128/IAI.55.3.609-615.1987
- Horstman, A.L., Kuehn, M.J., Bacterial surface association of heat-labile enterotoxin through lipopolysaccharide after secretion via the general secretory pathway. J. Biol. Chem., 277(36), 32538-32545 (2002). https://doi.org/10.1074/jbc.M203740200
- Dorward, D.W., Garon, C.F., Judd, R.C., Export and intercellular transfer of DNA via membrane blebs of Neisseria gonorrhoeae. J. Bacteriol., 171(5), 2499-2505 (1989). https://doi.org/10.1128/jb.171.5.2499-2505.1989
- Kolling, G.L., Matthews, K.R., Export of virulence genes and Shiga toxin by membrane vesicles of Escherichia coli O157: H7. Appl. Environ. Microbiol., 65(5), 1843-1848 (1999). https://doi.org/10.1128/aem.65.5.1843-1848.1999
- Yaron, S., Kolling, G.L., Simon, L., Matthews, K.R., VesicleMediated Transfer of Virulence Genes fromEscherichia coli O157: H7 to Other Enteric Bacteria. Appl. Environ. Micro-biol., 66(10), 4414-4420 (2000). https://doi.org/10.1128/AEM.66.10.4414-4420.2000
- Valadi, H., Ekstrom, K., Bossios, A., Sjostrand, M. Lee, J.J., Lotvall, J.O., Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells. Nat. Cell. Biol., 9, 654-659 (2007). https://doi.org/10.1038/ncb1596
- MacDonald, I.A., Kuehn, M.J., Offense and defense: microbial membrane vesicles play both ways. Res in microbial., 163(9-10), 607-618 (2012). https://doi.org/10.1016/j.resmic.2012.10.020
- Choi, J.W., Kim, S.C., Hong, S.H., Lee, H.J., Secretable small RNAs via outer membrane vesicles in periodontal pathogens. J. Dent. Res., 96(4), 458-466 (2017). https://doi.org/10.1177/0022034516685071
- Peng, L.H., Wang, M.Z., Chu, Y., Zhang, L., Niu, J., Shao, H.T., Yuan, T.J., Jiang, Z.H., Gao, J.Q., Ning, X.H., Engineering bacterial outer membrane vesicles as transdermal nanoplatforms for photo-TRAIL-programmed therapy against melanoma. Science advances, 6(27), eaba2735 (2020). https://doi.org/10.1126/sciadv.aba2735
- Hampton, T.H., Koeppen, K., Bashor, L., Stanton, B.A., Selection of Reference Genes for Quantitative PCR: Identifying Reference Genes for Airway Epithelial Cells Exposed to Pseudomonas aeruginosa. Am. J. Physiol. Lung. Cell. Mol. Physiol., 319(2), L256-L265 (2020). https://doi.org/10.1152/ajplung.00158.2020
- Yau, W.L., Lambertz, U., Colineau, L., Pescher, P., MacDonald, A., Zander, D., Retzlaff, S., Eick, J., Reiner, N., Clos, J., Spath, G.F., Phenotypic characterization of a Leishmania donovani cyclophilin 40 null mutant. J. Eukaryot Microbiol., 63(6), 823-833 (2016). https://doi.org/10.1111/jeu.12329
- Yue, Y., Liu, X., Xu, M., Ren, D., Liu, Q., Epidemiological dynamics of dengue fever in mainland China, 2014-2018. Int. J. Infect. Dis., 86, 82-93 (2019). https://doi.org/10.1016/j.ijid.2019.06.015
- Lenz, D.H., Mok, K.C., Lilley, B.N., Kulkarni, R.V., Wingreen, N.S., Bassler, B.L., The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae. Cell, 118(1), 69-82 (2004). https://doi.org/10.1016/j.cell.2004.06.009
- Storz, G., Vogel, J., Wassarman, K.M., Regulation by small RNAs in bacteria: expanding frontiers. Molecular cell, 43(6), 880-891 (2011). https://doi.org/10.1016/j.molcel.2011.08.022
- Gelsinger, D.R., Uritskiy, G., Reddy, R., Munn, A., Farney, K., DiRuggiero, J. Regulatory Noncoding Small RNAs Are Diverse and Abundant in an Extremophilic Microbial Community. Msystems, 5(1) (2020).
- MacDonald, I.A., Kuehn, M.J., Offense and defense: microbial membrane vesicles play both ways. Res. Microbiol., 163(9-10), 607-618 (2012). https://doi.org/10.1016/j.resmic.2012.10.020
- Begic, M., Josic, D., Biofilm formation and extracellular microvesicles-The way of foodborne pathogens toward resistance. Electrophoresis, 41(20), 1718-1739 (2020). https://doi.org/10.1002/elps.202000106
- Lee, H.J., Microbe-Host Communication by Small RNAs in Extracellular Vesicles: Vehicles for Transkingdom RNA Transportation. Int. J. Mol. Sci, 20(6), 1487. https://doi.org/10.3390/ijms20061487 (2019).
- Novakovic, S., Hocevar, M., Zgajnar, J., Besic, N., Stegel, V., Detection of telomerase RNA in the plasma of patients with breast cancer, malignant melanoma or thyroid cancer. Oncology reports, 11(1), 245-252 (2004).
- Liu, J., Perumal, A.S., Doucet, F.R., Rifai, K., Ozcan, L. Kheireddine, S., Wachsmann-Hogiu, S., A flexible and portable nanocomposite-based substrate for electrochemical biosensing (Conference Presentation). Nanoscale Imaging, Sensing, and Actuation for Biomedical Applications XVI 10891, 108910E (2019).
- Liu, J., Moakhar, R.S., Perumal, A.S., Roman, H.N., Mahshid, S., Wachsmann-Hogiu, S., An AgNP-deposited commercial electrochemistry test strip as a platform for urea detection. Scientific Reports, 10(1), 1-11 (2020). https://doi.org/10.1038/s41598-019-56847-4
- Zhao, X., Li, M., Liu, Y., Microfluidic-Based Approaches for Foodborne Pathogen Detection. Microorganisms, 7(10), 381 (2019). https://doi.org/10.3390/microorganisms7100381