References
- Sathiyamoorthy S, In J-G, Gayathri S, Kim Y-J, Yang D-C. Generation and gene ontology based analysis of expressed sequence tags (EST) from a Panax ginseng CA Meyer roots. Mol Biol Rep 2010;37:3465-72. https://doi.org/10.1007/s11033-009-9938-z
- Kim D-H. Chemical diversity of Panax ginseng, Panax quinquifolium, and Panax notoginseng. J Ginseng Res 2012;36:1. https://doi.org/10.5142/jgr.2012.36.1.1
- Singh P, Kim YJ, Wang C, Mathiyalagan R, Yang DC. The development of a green approach for the biosynthesis of silver and gold nanoparticles by using Panax ginseng root extract, and their biological applications. Artif Cells Nanomed Biotechnol 2016;44:1150-7.
- Wu D, Austin RS, Zhou S, Brown D. The root transcriptome for North American ginseng assembled and profiled across seasonal development. BMC Genomics 2013;14:564. https://doi.org/10.1186/1471-2164-14-564
- Shi W, Wang Y, Li J, Zhang H, Ding L. Investigation of ginsenosides in different parts and ages of Panax ginseng. Food Chem 2007;102:664-8. https://doi.org/10.1016/j.foodchem.2006.05.053
- Chen C-f, Chiou W-f, Zhang J-t. Comparison of the pharmacological effects of Panax ginseng and Panax quinquefolium. Acta Pharmacol Sin 2008;29:1103. https://doi.org/10.1111/j.1745-7254.2008.00868.x
- Attele AS, Wu JA, Yuan C-S. Ginseng pharmacology: multiple constituents and multiple actions. Biochem Pharmacol 1999;58:1685-93. https://doi.org/10.1016/S0006-2952(99)00212-9
- Jia L, Zhao Y. Current evaluation of the millennium phytomedicine-ginseng (I): etymology, pharmacognosy, phytochemistry, market and regulations. Curr Med Chem 2009;16:2475-84. https://doi.org/10.2174/092986709788682146
- Yuan C-S, Wang C-Z, Wicks SM, Qi L-W. Chemical and pharmacological studies of saponins with a focus on American ginseng. J Ginseng Res 2010;34:160. https://doi.org/10.5142/jgr.2010.34.3.160
- Lu J-M, Yao Q, Chen C. Ginseng compounds: an update on their molecular mechanisms and medical applications. Curr Vasc Pharmacol 2009;7:293-302. https://doi.org/10.2174/157016109788340767
- Lee J, Mudge KW. Water deficit affects plant and soil water status, plant growth, and ginsenoside contents in American ginseng. Hortic Environ Biotechnol 2013;54:475-83. https://doi.org/10.1007/s13580-013-0090-2
- Kim HK, Choi YH, Verpoorte R. NMR-based plant metabolomics: where do we stand, where do we go? Trends Biotechnol 2011;29:267-75. https://doi.org/10.1016/j.tibtech.2011.02.001
- Kim HK, Choi YH, Verpoorte R. NMR-based metabolomic analysis of plants. Nat Protoc 2010;5:536. https://doi.org/10.1038/nprot.2009.237
- Watkins SM, German JB. Toward the implementation of metabolomic assessments of human health and nutrition. Curr. Opin. Biotechnol 2002;13:512-6. https://doi.org/10.1016/S0958-1669(02)00363-4
- Sumner LW, Mendes P, Dixon RA. Plant metabolomics: large-scale phytochemistry in the functional genomics era. Phytochemistry 2003;62:817-36. https://doi.org/10.1016/S0031-9422(02)00708-2
- Kim N, Kim K, Choi BY, Lee D, Shin Y-S, Bang K-H, Cha S-W, Lee JW, Choi H-K, Jang DS, et al. Metabolomic approach for age discrimination of Panax ginseng using UPLC-Q-Tof MS. J Agric Food Chem 2011;59:10435-41. https://doi.org/10.1021/jf201718r
- Song H-H, Kim D-Y, Woo S, Lee H-K, Oh S-R. An approach for simultaneous determination for geographical origins of Korean Panax ginseng by UPLCQTOF/MS coupled with OPLS-DA models. J Ginseng Res 2013;37:341. https://doi.org/10.5142/jgr.2013.37.341
- Liu J, Liu Y, Wang Y, Abozeid A, Zu Y-G, Zhang X-N, Tang Z-H. GC-MS metabolomic analysis to reveal the metabolites and biological pathways involved in the developmental stages and tissue response of Panax ginseng. Molecules 2017;22:496. https://doi.org/10.3390/molecules22030496
- Kim Y-J, Joo SC, Shi J, Hu C, Quan S, Hu J, Sukweenadhi J, Mohanan P, Yang D-C, Zhang D. Metabolic dynamics and physiological adaptation of Panax ginseng during development. Plant Cell Rep 2018;37:393-410. https://doi.org/10.1007/s00299-017-2236-7
- Savorani F, Tomasi G, Engelsen SB. icoshift: a versatile tool for the rapid alignment of 1D NMR spectra. J Magn Reson 2010;202:190-202. https://doi.org/10.1016/j.jmr.2009.11.012
-
Dieterle F, Ross A, Schlotterbeck G, Senn H. Probabilistic quotient normalization as robust method to account for dilution of complex biological mixtures. Application in
$^{1}H$ NMR metabonomics. Anal Chem 2006;78:4281-90. https://doi.org/10.1021/ac051632c - Bylesjo M, Rantalainen M, Cloarec O, Nicholson JK, Holmes E, Trygg J. OPLS discriminant analysis: combining the strengths of PLS-DA and SIMCA classification. J Chemom 2006;20:341-51. https://doi.org/10.1002/cem.1006
- Trygg J, Wold S. Orthogonal projections to latent structures (O-PLS). J Chemom 2002;16:119-28. https://doi.org/10.1002/cem.695
-
Cloarec O, Dumas ME, Trygg J, Craig A, Barton RH, Lindon JC, Nicholson JK, Holmes E. Evaluation of the orthogonal projection on latent structure model limitations caused by chemical shift variability and improved visualization of biomarker changes in
$^{1}H$ NMR spectroscopic metabonomic studies. Anal Chem 2005;77:517-26. https://doi.org/10.1021/ac048803i -
Cloarec O, Dumas M-E, Craig A, Barton RH, Trygg J, Hudson J, Blancher C, Gauguier D, Lindon JC, Holmes E, et al. Statistical total correlation spectroscopy: an exploratory approach for latent biomarker identification from metabolic
$^{1}H$ NMR data sets. Anal Chem 2005;77:1282-9. https://doi.org/10.1021/ac048630x - Qu C, Bai Y, Jin X, Wang Y, Zhang K, You J, Zhang H. Study on ginsenosides in different parts and ages of Panax quinquefolius L. Food Chem 2009;115:340-6. https://doi.org/10.1016/j.foodchem.2008.11.079
- Kuhn C, Barker L, Burkle L, Frommer W-B. Update on sucrose transport in higher plants. J Exp Bot 1999:935-53.
- Rolland F, Moore B, Sheen J. Sugar sensing and signaling in plants. Plant Cell 2002;14:S185-205. https://doi.org/10.1105/tpc.010455
- Ma R, Sun L, Chen X, Jiang R, Sun H, Zhao D. Proteomic changes in different growth periods of ginseng roots. Plant Physiol Biochem 2013;67:20-32. https://doi.org/10.1016/j.plaphy.2013.02.023
- Reich P, Ellsworth D, Walters M. Leaf structure (specific leaf area) modulates photosynthesisenitrogen relations: evidence from within and across species and functional groups. Funct Ecol 1998;12:948-58. https://doi.org/10.1046/j.1365-2435.1998.00274.x
- Amor Y, Haigler CH, Johnson S, Wainscott M, Delmer DP. A membrane-associated form of sucrose synthase and its potential role in synthesis of cellulose and callose in plants. Proc Natl Acad Sci 1995;92:9353-7. https://doi.org/10.1073/pnas.92.20.9353
- Ruan Y-L, Llewellyn DJ, Furbank RT. Suppression of sucrose synthase gene expression represses cotton fiber cell initiation, elongation, and seed development. Plant Cell 2003;15:952-64. https://doi.org/10.1105/tpc.010108
- Koch K. Sucrose metabolism: regulatory mechanisms and pivotal roles in sugar sensing and plant development. Curr Opin Plant Biol 2004;7:235-46. https://doi.org/10.1016/j.pbi.2004.03.014
- Rawsthorne S. Carbon flux and fatty acid synthesis in plants. Prog Lipid Res 2002;41:182-96. https://doi.org/10.1016/S0163-7827(01)00023-6
- Ji H-G, Lee Y-R, Lee M-S, Hwang KH, Park CY, Kim E-H, Park JS, Hong Y-S. Diverse metabolite variations in tea (Camellia sinensis L.) leaves grown under various shade conditions revisited: a metabolomics study. J Agric Food Chem 2018;66:1889-97. https://doi.org/10.1021/acs.jafc.7b04768
- Choi K-t. Botanical characteristics, pharmacological effects and medicinal components of Korean Panax ginseng CA Meyer. Acta Pharmacol Sin 2008;29:1109-18. https://doi.org/10.1111/j.1745-7254.2008.00869.x
- Zhao S, Wang L, Liu L, Liang Y, Sun Y, Wu J. Both the mevalonate and the nonmevalonate pathways are involved in ginsenoside biosynthesis. Plant Cell Rep 2014;33:393-400. https://doi.org/10.1007/s00299-013-1538-7
- Wu Q, Sun C, Chen S. Identification and expression analysis of a 3-hydroxy-3-methylglutaryl coenzyme A reductase gene from American ginseng. Plant Omics 2012;5:414.
- Chappell J. The biochemistry and molecular biology of isoprenoid metabolism. Plant Physiol 1995;107:1. https://doi.org/10.1104/pp.107.1.1
- Kawoosa T, Singh H, Kumar A, Sharma SK, Devi K, Dutt S, Vats SK, Sharma M, Ahuja PS, Kumar S. Light and temperature regulated terpene biosynthesis: hepatoprotective monoterpene picroside accumulation in Picrorhiza kurrooa. Funct Integr Genomics 2010;10:393-404. https://doi.org/10.1007/s10142-009-0152-9
- Kim Y-J, Lee OR, Oh JY, Jang M-G, Yang D-C. Functional analysis of 3-hydroxy-3-methylglutaryl coenzyme a reductase encoding genes in triterpene saponin-producing ginseng. Plant Physiol 2014;165:373-87. https://doi.org/10.1104/pp.113.222596
- Bach TJ, Lichtenthaler HK. Inhibition by mevinolin of plant growth, sterol formation and pigment accumulation. Physiol Plant 1983;59:50-60. https://doi.org/10.1111/j.1399-3054.1983.tb06570.x
- Hartmann M-A. Plant sterols and the membrane environment. Trends Plant Sci 1998;3:170-5. https://doi.org/10.1016/S1360-1385(98)01233-3
- Grunwald C. Plant sterols. Annu Rev Plant Physiol 1975;26:209-36. https://doi.org/10.1146/annurev.pp.26.060175.001233
- Han J-Y, In J-G, Kwon Y-S, Choi Y-E. Regulation of ginsenoside and phytosterol biosynthesis by RNA interferences of squalene epoxidase gene in Panax ginseng. Phytochemistry 2010;71:36-46. https://doi.org/10.1016/j.phytochem.2009.09.031
- Lee M-H, Jeong J-H, Seo J-W, Shin C-G, Kim Y-S, In J-G, Yang D-C, Yi J-S, Choi YE. Enhanced triterpene and phytosterol biosynthesis in Panax ginseng overexpressing squalene synthase gene. Plant Cell Physiol 2004;45:976-84. https://doi.org/10.1093/pcp/pch126
- Seo J-W, Jeong J-H, Shin C-G, Lo S-C, Han S-S, Yu K-W, Harada E, Han J-Y, Choi Y-E. Overexpression of squalene synthase in Eleutherococcus senticosus increases phytosterol and triterpene accumulation. Phytochemistry 2005;66:869-77. https://doi.org/10.1016/j.phytochem.2005.02.016
- Kim Y-K, Kim YB, Uddin MR, Lee S, Kim S-U, Park SU. Enhanced triterpene accumulation in Panax ginseng hairy roots overexpressing mevalonate-5-pyrophosphate decarboxylase and farnesyl pyrophosphate synthase. ACS Synth Biol 2014;3:773-9. https://doi.org/10.1021/sb400194g
- Durner J, Klessig DF. Nitric oxide as a signal in plants. Curr Opin Plant Biol 1999;2:369-74. https://doi.org/10.1016/S1369-5266(99)00007-2
- Neill SJ, Desikan R, Hancock JT. Nitric oxide signalling in plants. New Phytol 2003;159:11-35. https://doi.org/10.1046/j.1469-8137.2003.00804.x
- Kusano T, Berberich T, Tateda C, Takahashi Y. Polyamines: essential factors for growth and survival. Planta 2008;228:367-81. https://doi.org/10.1007/s00425-008-0772-7
- Herrmann KM. The shikimate pathway: early steps in the biosynthesis of aromatic compounds. Plant Cell 1995;7:907. https://doi.org/10.2307/3870046
- Weaver LM, Herrmann KM. Dynamics of the shikimate pathway in plants. Trends Plant Sci 1997;2:346-51. https://doi.org/10.1016/S1360-1385(97)84622-5
- Whetten R, Sederoff R. Lignin biosynthesis. Plant Cell 1995;7:1001. https://doi.org/10.2307/3870053
- Mano Y, Nemoto K. The pathway of auxin biosynthesis in plants. J Exp Bot 2012;63:2853-72. https://doi.org/10.1093/jxb/ers091
- Normanly J. Approaching cellular and molecular resolution of auxin biosynthesis and metabolism. Cold Spring Harb Perspect Biol 2010;2:a001594. https://doi.org/10.1101/cshperspect.a001594
- Zhao Y. Auxin biosynthesis: a simple two-step pathway converts tryptophan to indole-3-acetic acid in plants. Mol Plant 2012;5:334-8. https://doi.org/10.1093/mp/ssr104
- Olsen KM, Lea US, Slimestad R, Verheul M, Lillo C. Differential expression of four Arabidopsis PAL genes; PAL1 and PAL2 have functional specialization in abiotic environmental-triggered flavonoid synthesis. J Plant Physiol 2008;165:1491-9. https://doi.org/10.1016/j.jplph.2007.11.005
- Kavi Kishor P. Aromatic amino acid metabolism during organogenesis in rice callus cultures. Physiol Plant 1989;75:395-8. https://doi.org/10.1111/j.1399-3054.1989.tb04644.x
- Mierziak J, Kostyn K, Kulma A. Flavonoids as important molecules of plant interactions with the environment. Molecules 2014;19:16240-65. https://doi.org/10.3390/molecules191016240
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