Fig. 1. Proposed HS-degradative pathway by Pseudomonas sp. PAMC 29040.
참고문헌
- Alvarez-Rodriguez ML, Belloch C, Villa M, Uruburu F, Larriba G, and Coque JJR. 2003. Degradation of vanillic acid and production of guaiacol by microorganisms isolated from cork samples. FEMS Microbiol. Lett. 220, 49-55. https://doi.org/10.1016/S0378-1097(03)00053-3
- Bankevich A, Nurk S, Antipov D, Gurevich A, Dvorkin M, Kulikov AS, Lesin V, Nikolenko S, Pham S, Prjibelski A, et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J. Comput. Biol. 19, 455-477. https://doi.org/10.1089/cmb.2012.0021
- Bugg TD, Ahmad M, Hardiman EM, and Rahmanpour R. 2011. Pathways for degradation of lignin in bacteria and fungi. Nat. Prod. Rep. 28, 1883-1896. https://doi.org/10.1039/c1np00042j
- Grinhut T, Hadar Y, and Chen Y. 2007. Degradation and transformation of humic substances by saprotrophic fungi: processes and mechanisms. Fungal Biol. Rev. 21, 179-189. https://doi.org/10.1016/j.fbr.2007.09.003
- Kamimura N, Takahashi K, Mori K, Araki T, Fujita M, Higuchi Y, and Masai E. 2017. Bacterial catabolism of lignin-derived aromatics: New findings in a recent decade: Update on bacterial lignin catabolism. Environ. Microbiol. Rep. 9, 679-705. https://doi.org/10.1111/1758-2229.12597
- Kim D, Park HJ, Sul WJ, and Park H. 2018. Transcriptome analysis of Pseudomonas sp. from subarctic tundra soil: pathway description and gene discovery for humic acids degradation. Folia Microbiol. (Praha) 63, 315-323. https://doi.org/10.1007/s12223-017-0573-0
- Lomsadze A, Gemayel K, Tang S, and Borodovsky M. 2018. Modeling leaderless transcription and atypical genes results in more accurate gene prediction in prokaryotes. Genome Res. 28, 1079-1089. https://doi.org/10.1101/gr.230615.117