The Korean Journal of Mycology (한국균학회지)

The Korean Society of Mycology (한국균학회)
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A New Report on Three Species of Sordariomycetes Class Isolated from Soil in Korea

  • Das, Kallol (College of Agriculture and Life Sciences, Kyungpook National University) ;
  • Lee, Seung-Yeol (College of Agriculture and Life Sciences, Kyungpook National University) ;
  • Jung, Hee-Young (College of Agriculture and Life Sciences, Kyungpook National University)
  • Received : 2018.05.15
  • Accepted : 2018.05.30
  • Published : 2018.06.01
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Abstract

Three fungal strains belonging to the class Sordariomycetes, namely BH-06, 17-039 and BE12-1, were isolated from soils in Korea and identified as Chaunopycnis alba, Myrothecium cinctum and Humicola olivacea, respectively. These species were confirmed according to their morphological characteristics and phylogenetic relationships determined based on internal transcribed spacer regions, as well as large subunit, small subunit, ${\beta}$-Tubulin and RNA polymerase II largest subunit sequences of ribosomal DNA. These three species are the first members of the Sordariomycetes reported in Korea.

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References

  1. Samarakoon MC, Hyde KD, Promputtha I, Hongsanan S, Ariyawansa HA, Maharachchikumbura SS, Daranagama DA, Stadler M, Mapook A. Evolution of Xylariomycetidae (Ascomycota: Sordariomycetes). Mycosphere 2016;7:1746-61. https://doi.org/10.5943/mycosphere/7/11/9
  2. Zhang N, Castlebury LA, Miller AN, Huhndorf SM, Schoch CL, Seifert KA, Rossman AY, Rogers JD, Kohlmeyer J, Volkmann-Kohlmeyer B, et al. An overview of the systematics of the Sordariomycetes based on a four-gene phylogeny. Mycologia 2006; 98:1076-87. https://doi.org/10.1080/15572536.2006.11832635
  3. Wang H, Guo S, Huang M, Thorsten LH, Wei J. Ascomycota has a faster evolutionary rate and higher species diversity than Basidiomycota. Sci China Life Sci 2010;53: 1163-9. https://doi.org/10.1007/s11427-010-4063-8
  4. Maharachchikumbura SS, Hyde KD, Jones EB, McKenzie EH, Bhat JD, Dayarathne MC, Huang SK, Norphanphoun C, Senanayake IC, Perera RH, et al. Families of Sordariomycetes. Fungal Divers 2016;79:1-317. https://doi.org/10.1007/s13225-016-0369-6
  5. Alexopoulos CJ, Mims CW, Blackwell M. Introductory mycology. 4th ed. New York: John Wiley; 1996.
  6. Samuels GJ, Blackwell M. Pyrenomycetes-fungi with perithecia. In: McLaughlin DJ, McLaughlin EG, Lemke PA, editors. Systematics and evolution: part A. Berlin: Springer; 2001. p. 221-55.
  7. Miller AN, Huhndorf SM. Multi-gene phylogenies indicate ascomal wall morphology is a better predictor of phylogenetic relationships than ascospore morphology in the Sordariales (Ascomycota, Fungi). Mol Phylogenet Evol 2005;35:60-75. https://doi.org/10.1016/j.ympev.2005.01.007
  8. White TJ, Bruns T, Lee S, Taylor J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, editors. PCR protocols: a guide to methods and applications. New York: Academic Press; 1990. p. 315-22.
  9. O'Donnell K. Fusarium and its near relatives. In: Reynolds DR, Taylor JW, editors. The fungal holomorph: mitotic, meiotic and pleomorphic speciation in fungal systematics. Wallingford: CAB International; 1993. p. 225-33.
  10. O'Donnell K, Cigelnik E. Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous. Mol Phylogenet Evol 1997;7:103-16. https://doi.org/10.1006/mpev.1996.0376
  11. Groenewald JZ, Nakashima C, Nishikawa J, Shin HD, Park JH, Jama AN, Groenewald M, Braun U, Crous PW. Species concepts in Cercospora: spotting the weeds among the roses. Stud Mycol 2013;75:115-70. https://doi.org/10.3114/sim0012
  12. Wang XW, Houbraken J, Groenewald JZ, Meijer M, Andersen B, Nielsen KF, Crous PW, Samson RA. Diversity and taxonomy of Chaetomium and chaetomium-like fungi from indoor environments. Stud Mycol 2016;84:145-224. https://doi.org/10.1016/j.simyco.2016.11.005
  13. Huhndorf SM, Miller AN, Fernandez FA. Molecular systematics of the Sordariales: the order and the family Lasiosphaeriaceae redefined. Mycologia 2004;96:368-87. https://doi.org/10.1080/15572536.2005.11832982
  14. Vilgalys R, Sun BL. Ancient and recent patterns of geographic speciation in the oyster mushroom Pleurotus revealed by phylogenetic analysis of ribosomal DNA sequences. Proc Natl Acad Sci USA 1994;91:4599-603. https://doi.org/10.1073/pnas.91.10.4599
  15. Rehner SA, Samuels GJ. Molecular systematics of the Hypocreales: a teleomorph gene phylogeny and the status of their anamorphs. Can J Bot 1995;73:816-23. https://doi.org/10.1139/b95-327
  16. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 1980;16:111-20. https://doi.org/10.1007/BF01731581
  17. Kumar S, Stecher G, Tamura K. MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. Mol Biol Evol 2016;33:1870-4. https://doi.org/10.1093/molbev/msw054
  18. Gams W. Chaunopycnis alba, gen. et sp. nov., a soil fungus intermediate between Moniliales and Sphaeropsidales. Persoonia 1980;11:75-9.
  19. Kobayashi T, Masuma R, Omura S, Watanabe K. Materials for the fungus flora of Japan (47). Mycoscience 1994;35:399-401. https://doi.org/10.1007/BF02268512
  20. Bills GF, Polishook JD, Goetz MA, Sullivan RF, White JF Jr. Chaunopycnis pustulata sp. nov., a new clavicipitalean anamorph producing metabolites that modulate potassium ion channels. Mycol Prog 2002;1:3-17. https://doi.org/10.1007/s11557-006-0001-3
  21. Levetin E, Shaughnessy R. Myrothecium: a new indoor contaminant? Aerobiologia 1997;13:227-34. https://doi.org/10.1007/BF02694490
  22. Ellis MB, Ellis JP. Microfungi on land plants: an identification handbook. Slough: Richmond Publishing; 1997.
  23. Watanabe T. Pictorial atlas of soil and seed fungi. 2nd ed. Boca Raton: CRC Press; 2002.
  24. Wagenaar MM, Clardy J. Two new roridins isolated from Myrothecium sp. J of Antibiot (Tokyo) 2001;54:517-20. https://doi.org/10.7164/antibiotics.54.517
  25. Burns N, Arthur I, Leung M, Ketharanathan S, Sandoval-Denis M, Gene J, Guarro J, Chakera A. Humicola sp. as a cause of peritoneal dialysis-associated peritonitis. J Clin Microbiol 2015;53:3081-5. https://doi.org/10.1128/JCM.01253-15
  26. Moubasher H, Mostafa FA, Wahsh S, Haroun O. Purification and characterization of lignin peroxidase isozymes from Humicola grisea (Traaen) and its application in bioremediation of textile dyes. Egypt J Bot 2017;57:335-43. https://doi.org/10.21608/ejbo.2017.775.1045