Ten Cases of R53H Variant of PAH Gene in Benign Hyperphenylalaninemia

PAH 유전자의 R53H 유전자변이를 보인 양성 고페닐알라닌혈증 10례

  • Lee, Jiyun (Department of Pediatrics, Soonchunhyang University Hospital Seoul, Soonchunhyang University College of Medicine) ;
  • Lee, Jeongho (Department of Pediatrics, Soonchunhyang University Hospital Seoul, Soonchunhyang University College of Medicine) ;
  • Lee, Dong Hwan (Department of Pediatrics, Soonchunhyang University Hospital Seoul, Soonchunhyang University College of Medicine)
  • 이지윤 (순천향대학교 의과대학 소아과학교실) ;
  • 이정호 (순천향대학교 의과대학 소아과학교실) ;
  • 이동환 (순천향대학교 의과대학 소아과학교실)
  • Published : 2017.04.30

Abstract

Purpose: Phenylketonuria (PKU) results from a deficiency of phenylalanine hydroxylase (PAH). The mutation of the PAH gene results in decreased phenylalanine hydroxylase enzyme activity in hyperphenylalaninemia (HPA) patients. This study reports ten cases of patients with the benign HPA genotype c.158G>A (p.Arg53His, R53H) variant in the PAH gene and aims to evaluate the clinical significance of the R53H variant. Methods: Ten Korean patients with the HPA genotype the R53H variant were included in this study. A retrospective medical record review was conducted. We characterized the phenotypes of the patients with HPA with the R53H variant using the following system: classic PKU, moderate PKU, mild PKU, Mild HPA, and benign HPA. Results: Five patients had the R53H variant with the "Pathogenic" variants (R413P, R241C, $Y356^*$, c.442-1G>A, $Y325^*$), Two patients had the "Likely pathogenic" variants ($W187^*$, A259T), Two patients had the "Uncertain significance" variants (R53H, G344D), and One patient had the "Not provided" variant (c.1066-14C>G). Nine patients genotyped with the R53H variant were the patient with benign HPA and One patient genotyped with the R53H homozygote was within normal range of plasma phenylalanine. None of the ten patients required dietary restriction of phenylalanine or pharmacotherapy to maintain their plasma phenylalanine levels and showed no clinical symptoms of HPA. Conclusion: Ten patients with HPA genotype the R53H variant were the patient with benign HPA and showed no clinical symptoms of HPA. Thus, the R53H variant, which was previously classified as an "Uncertain significance" mutation in HPA patients, should be re-classified as "Benign."

서론: 페닐케톤뇨증은 방향족 아미노산의 하나인 페닐알라닌의 대사장애가 발생하는 유전성 대사질환이다. 양성 고페닐알라닌혈증은 페닐알라닌 수산화효소(PAH) 유전자 변이가 발견되는 페닐케톤뇨증 환자에서 저페닐알라닌 식사 치료가 필요 없이 정상적인 성장 및 발달이 가능한 질환이다. 최근 PAH 유전자의 R53H 변이는 병적이라기 보다 양성에 가까운 것으로 생각되었으며 저자들은 양성 고페닐알라닌혈증 환자들에서 R53H 유전자변이를 보인 10례를 경험하였기에 보고하는 바이다. 방법: 2010년 4월부터 2017년 5월까지 순천향대학교 서울병원에서 추적관찰하고 있는 양성 고페닐알라닌혈증 환자 중 R53H변이를 가진 10명의 한국인 환자의 의무기록을 검토하였다. 환자들은 혈중 아미노산 분석을 통해 고페닐알라닌혈증을 진단받았으며, 모든 환자들은 PAH 유전자 검사를 통해 유전자 변이를 진단받았다. 환자들의 의무기록 검토를 통해 환자의 동반 유전자 변이, 증상 및 혈중 페닐알라닌 농도, 치료여부 등을 분석하였다. 결과: 상기 환자들 중 5명은 R53H와 함께 "병적인" 유전자를 보였으며(R413P, R241C, $Y356^*$, c.442-1G>A, $Y325^*$), 2명에서는 "병적일 수 있는" 유전자 변이를 보였다($W187^*$, A259T). "중요도가 확실하지 않은" 유전자 변이를 가진 환자는 2명이었으며(R53H, G344D), 이 중 35세 남성 1명은 R53H의 동형접합자였다. 1명의 환자에서는 아직 밝혀지지 않은 인트론(intron) 변이가 발견 되었다. 환자들은 혈중 페닐알라닌 수치가 $103.1{\mu}mol/L$ 였던 R53H 동형접합체인 35세 남자 환자를 제외하고는 모두 양성 고페닐알라닌혈증으로 진단되었다. 모든 환자에서 정상 식사를 진행하였으며, 약물 치료는 시행하지 않았다. 모든 환자에서 페닐케톤뇨증의 증상은 없었다. 결론: 본 연구의 R53H 유전자 변이를 가진 환자 10명은 특별한 치료 없이도 정상적인 성장 및 발달을 보였다. 이는 이전에 양성 고페닐알라닌혈증으로 진단된 환자들의 R53H 변이가 정상 변이일 가능성이 높음을 의미하는 것이며 이형접합으로 병적변이를 가진 사람들이 환자가 아니라 보인자 또는 정상인일 수 있음을 의미한다. 따라서 현재 "중요도가 확실하지 않은"으로 분류되어있는 R53H변이는 "양성"으로 분류되어야 할 것이다.

Keywords

References

  1. Al Hafid N, Christodoulou J. Phenylketonuria: a review of current and future treatments. Translational pediatrics 2015;4:304-17.
  2. Blau N, van Spronsen FJ, Levy HL. Phenylketonuria. Lancet (London, England) 2010;376:1417-27. https://doi.org/10.1016/S0140-6736(10)60961-0
  3. Mitchell JJ, Trakadis YJ, Scriver CR. Phenylalanine hydroxylase deficiency. Genetics in medicine : official journal of the American College of Medical Genetics 2011;13:697-707. https://doi.org/10.1097/GIM.0b013e3182141b48
  4. Kim SW, Jung J, Oh HJ, Kim J, Lee KS, Lee DH, et al. Structural and functional analyses of mutations of the human phenylalanine hydroxylase gene. Clinica chimica acta; international journal of clinical chemistry 2006;365:279-87. https://doi.org/10.1016/j.cca.2005.09.019
  5. Paine RS. The variability in manifestations of untreated patients with phenylketonuria (phenylpyruvic aciduria). Pediatrics 1957;20:290-302.
  6. Erlandsen H, Stevens RC. The structural basis of phenylketonuria. Molecular genetics and metabolism 1999;68:103-25. https://doi.org/10.1006/mgme.1999.2922
  7. Woo SL, Lidsky AS, Guttler F, Chandra T, Robson KJ. Cloned human phenylalanine hydroxylase gene allows prenatal diagnosis and carrier detection of classical phenylketonuria. Nature 1983;306:151-5. https://doi.org/10.1038/306151a0
  8. DiLella AG, Kwok SC, Ledley FD, Marvit J, Woo SL. Molecular structure and polymorphic map of the human phenylalanine hydroxylase gene. Biochemistry 1986;25:743-9. https://doi.org/10.1021/bi00352a001
  9. Scriver CR. The PAH gene, phenylketonuria, and a paradigm shift. Human mutation 2007;28:831-45. https://doi.org/10.1002/humu.20526
  10. Amendola LM, Dorschner MO, Robertson PD, Salama JS, Hart R, Shirts BH, et al. Actionable exomic incidental findings in 6503 participants: challenges of variant classification. Genome research 2015;25:305-15. https://doi.org/10.1101/gr.183483.114
  11. Dorschner MO, Amendola LM, Turner EH, Robertson PD, Shirts BH, Gallego CJ, et al. Actionable, pathogenic incidental findings in 1,000 participants' exomes. American journal of human genetics 2013;93:631-40. https://doi.org/10.1016/j.ajhg.2013.08.006
  12. Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, et al. Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genetics in medicine : official journal of the American College of Medical Genetics 2015;17:405-24. https://doi.org/10.1038/gim.2015.30
  13. Park YS, Seoung CS, Lee SW, Oh KH, Lee DH, Yim J. Identification of three novel mutations in Korean phenylketonuria patients: R53H, N207D, and Y325X. Human mutation. 1998;Suppl 1:S121-2.
  14. Guldberg P, Levy HL, Hanley WB, Koch R, Matalon R, Rouse BM, et al. Phenylalanine h ydroxylase gene mutations in the United States: report from the Maternal PKU Collaborative Study. American journal of human genetics. 1996;59:84-94.
  15. Bercovich D, Elimelech A, Yardeni T, Korem S, Zlotogora J, Gal N, et al. A mutation analysis of the phenylalanine hydroxylase (PAH) gene in the Israeli population. Annals of human genetics 2008;72(Pt 3):305-9. https://doi.org/10.1111/j.1469-1809.2007.00425.x
  16. Lee DH, Koo SK, Lee KS, Yeon YJ, Oh HJ, Kim SW, et al. The molecular basis of phenylketonuria in Koreans. Journal of human genetics 2004;49:617-21. https://doi.org/10.1007/s10038-004-0197-5
  17. Pey AL, Stricher F, Serrano L, Martinez A. Predicted effects of missense mutations on native-state stability account for phenotypic outcome in phenylketonuria, a paradigm of misfolding diseases. American journal of human genetics 2007;81:1006-24. https://doi.org/10.1086/521879
  18. Lee YW, Lee DH, Kim ND, Lee ST, Ahn JY, Choi TY, et al. Mutation analysis of PAH gene and characterization of a recurrent deletion mutation in Korean patients with phenylketonuria. Experimental & molecular medicine 2008;40:533-40. https://doi.org/10.3858/emm.2008.40.5.533
  19. Polak E, Ficek A, Radvanszky J, Soltysova A, Urge O, Cmelova E, et al. Phenylalanine hydroxylase deficiency in the Slovak population: genotype-phenotype correlations and genotype-based predictions of BH4-responsiveness. Gene 2013;526:347-55. https://doi.org/10.1016/j.gene.2013.05.057
  20. Zhu T, Ye J, Han L, Qiu W, Zhang H, Liang L, et al. Variations in genotype-phenotype correlations in phenylalanine hydroxylase deficiency in Chinese Han population. Gene 2013;529:80-7. https://doi.org/10.1016/j.gene.2013.07.079
  21. Li N, Jia H, Liu Z, Tao J, Chen S, Li X, et al. Molecular characterisation of phenylketonuria in a Chinese mainland population using next-generation sequencing. Scientific reports 2015;5:15769. https://doi.org/10.1038/srep15769
  22. Bercovich D, Elimelech A, Zlotogora J, Korem S, Yardeni T, Gal N, et al. Genotype-phenotype correlations analysis of mutations in the phenylalanine hydroxylase (PAH) gene. Journal of human genetics 2008;53:407-18. https://doi.org/10.1007/s10038-008-0264-4
  23. Camp KM, Parisi MA, Acosta PB, Berry GT, Bilder DA, Blau N, et al. Phenylketonuria Scientific Review Conference: state of the science and future research needs. Molecular genetics and metabolism 2014;112:87-122. https://doi.org/10.1016/j.ymgme.2014.02.013
  24. Guldberg P, Henriksen KF, Guttler F. Molecular analysis of phenylketonuria in Denmark: 99% of the mutations detected by denaturing gradient gel electrophoresis. Genomics 1993;17:141-6. https://doi.org/10.1006/geno.1993.1295
  25. Fridovich-Keil JL, Gambello MJ, Singh RH, Sharer JD. Duarte Variant Galactosemia. In: Pagon RA, Adam MP, Ardinger HH, Wallace SE, Amemiya A, Bean LJH, et al., editors. GeneReviews (R). Seattle (WA): University of Washington, Seattle University) Washington, Seattle. GeneReviews is a registered trademark of the University of Washington, Seattle. All rights reserved.; 1993.
  26. Sullivan SE, Moore SD, Connor JM, King M, Cockburn F, Steinmann B, et al. Haplotype distribution of the human phenylalanine hydroxylase locus in Scotland and Switzerland. American journal of human genetics 1989;44:652-9.
  27. Avigad S, Cohen BE, Bauer S, Schwartz G, Frydman M, Woo SL, et al. A single origin of phenylketonuria in Yemenite Jews. Nature 1990;344:168-70. https://doi.org/10.1038/344168a0
  28. Okano Y, Asada M, Kang Y, Nishi Y, Hase Y, Oura T, et al. Molecular characterization of phenylketonuria in Japanese patients. Human genetics 1998;103:613-8. https://doi.org/10.1007/s004390050877
  29. Bosco P, Ceratto N, Cali F, Goltsov AA, Eisensmith RC, Novelli G, et al. RFLP discordance in a PKU family due to a deletion in the PAH gene. The Turkish journal of pediatrics 1996;38:497-504.
  30. Gable M, Williams M, Stephenson A, Okano Y, Ring S, Hurtubise M, et al. Comparative multiplex dosage analysis detects whole exon deletions at the phenylalanine hydroxylase locus. Human mutation 2003;21:379-86. https://doi.org/10.1002/humu.10199