References
- Bankevich, A., Nurk, S., Antipov, D., Gurevich, A.A., Dvorkin, M., Kulikov, A.S., Lesin, V.M., Nikolenko, S.I., Pham, S., Prjibelski, A.D., et al. 2012. SPAdes: A new genome assembly algorithm and its applications to single-cell sequencing. J. Comput. Biol. 19, 455-477. https://doi.org/10.1089/cmb.2012.0021
- Bao, E., Jiang, T., and Girke, T. 2014. AlignGraph: Algorithm for secondary de novo genome assembly guided by closely related references. Bioinformatics 30, i319-i328. https://doi.org/10.1093/bioinformatics/btu291
- Cho, E., Park, S.N., Lim, Y.K., Shin, Y., Paek, J., Hwang, C.H., Chang, Y.H., and Kook, J.K. 2015. Fusobacterium hwasookii sp. nov., isolated from a human periodontitis lesion. Curr. Microbiol. 70, 169-175. https://doi.org/10.1007/s00284-014-0692-7
- Haffajee, A.D. and Socransky, S.S. 1994. Microbial etiological agents of destructive periodontal diseases. Periodontology 2000 5, 78-111. https://doi.org/10.1111/j.1600-0757.1994.tb00020.x
- Luo, R., Liu, B., Xie, Y., Li, Z., Huang, W., Yuan, J., He, G., Chen, Y., Pan, Q., Liu, Y., et al. 2012. SOAPdenovo2: An empirically improved memory-efficient short-read de novo assembler. Gigascience 1, 18. Erratum in: Gigascience 2015. 4, 30. https://doi.org/10.1186/2047-217X-1-18
- Milsom, S.E., Sprague, S.V., Dymock, D., Weightman, A.J., and Wade, W.G. 1996. Rapid differentiation of Prevotella intermedia and P. nigrescens by 16S rDNA PCR-RFLP. J. Med. Microbiol. 44, 41-43. https://doi.org/10.1099/00222615-44-1-41
- Moen, K., Brun, J.G., Valen, M., Skartveit, L., Eribe, E.K., Olsen, I., and Jonsson, R. 2006. Synovial inflammation in active rheumatoid arthritis and psoriatic arthritis facilitates trapping of a variety of oral bacterial DNAs. Clin. Exp. Rheumatol. 24, 656-663.
- Okamoto, M., Maeda, N., Kondo, K., and Leung, K.P. 1999. Hemolytic and hemagglutinating activities of Prevotella intermedia and Prevotella nigrescens. FEMS Microbiol. Lett. 178, 299-304. https://doi.org/10.1111/j.1574-6968.1999.tb08691.x
- Otto, T.D., Sanders, M., Berriman, M., and Newbold, C. 2010. Iterative correction of reference nucleotides (iCORN) using second generation sequencing technology. Bioinformatics 26, 1704-1707. https://doi.org/10.1093/bioinformatics/btq269
- Papapanou, P.N., Neiderud, A.M., Papadimitriou, A., Sandros, J., and Dahlen, G. 2000. "Checkerboard" assessments of periodontal microbiota and serum antibody responses: a case-control study. J. Periodontal. 71, 885-897. https://doi.org/10.1902/jop.2000.71.6.885
- Park, S.N., Lim, Y.K., and Kook, J.K. 2013. Development of quantitative real-time PCR primers for detecting 42 oral bacterial species. Arch. Microbiol. 195, 473-482. https://doi.org/10.1007/s00203-013-0896-4
- Shah, H.N. and Collins, D.M. 1990. Prevotella, a new genus to include Bacteroides elaninogenicus and related species formerly classified in the genus Bacteroides. Int. J. Syst. Bacteriol. 40, 205-208. https://doi.org/10.1099/00207713-40-2-205