Korean Journal of Microbiology (미생물학회지)

The Microbiological Society of Korea (한국미생물학회)
권호 표지
DOI QR코드

DOI QR Code

Draft genome sequence of Prevotella intermedia KCOM 1107 isolated from a human subgingival dental plaque of gingivitis lesion

사람 치은염 병소의 치은연하치면세균막에서 분리된 Prevotella intermedia KCOM 1107의 유전체 염기서열 해독

  • Park, Soon-Nang (Korean Collection for Oral Microbiology and Department of Oral Biochemistry, School of Dentistry, Chosun University) ;
  • Lim, Yun Kyong (Korean Collection for Oral Microbiology and Department of Oral Biochemistry, School of Dentistry, Chosun University) ;
  • Shin, Ja Young (Macrogen Inc.) ;
  • Roh, Hanseong (Macrogen Inc.) ;
  • Kook, Joong-Ki (Korean Collection for Oral Microbiology and Department of Oral Biochemistry, School of Dentistry, Chosun University)
  • 박순낭 (조선대학교 치과대학 구강생화학교실 및 한국구강미생물자원은행) ;
  • 임윤경 (조선대학교 치과대학 구강생화학교실 및 한국구강미생물자원은행) ;
  • 신자영 (마크로젠) ;
  • 노한성 (마크로젠) ;
  • 국중기 (조선대학교 치과대학 구강생화학교실 및 한국구강미생물자원은행)
  • Received : 2017.08.08
  • Accepted : 2017.08.10
  • Published : 2017.09.30
Download PDF
⟨ Previous Next ⟩

Abstract

Prevotella intermedia is a Gram-negative, obligately anaerobic, nonsporeforming, and nonmotile rod. P. intermedia is associated with periodontitis, pregnancy gingivitis, acute necrotic ulcerative gingivitis, endodontic infection, and rheumatoid arthritis. P. intermedia KCOM 1107 (= ChDC KB29) was isolated from a human subgingival dental plaque of gingivitis lesion. Here, we present the draft genome sequence of P. intermedia KCOM 1107.

Prevotella intermedia는 그람 음성이면서, 절대 혐기성, 비스포아형성 및 운동성 간균이다. P. intermedia는 사람의 구강내 정상세균총의 하나이며, 치주질환, 임신성 치은염, 급성괴사성궤사성 치은염, 치근관 감염, 및 류마티성 관절염과 관련이 있다. P. intermedia KCOM 1107 (= ChDC KB29) 균주가 사람 치은염 병소 치은연하 치면세균막에서 분리되었다. P. intermedia KCOM 1107 균주 유전체 염기서열을 해독하여 보고한다.

Keywords

References

  1. Bankevich, A., Nurk, S., Antipov, D., Gurevich, A.A., Dvorkin, M., Kulikov, A.S., Lesin, V.M., Nikolenko, S.I., Pham, S., Prjibelski, A.D., et al. 2012. SPAdes: A new genome assembly algorithm and its applications to single-cell sequencing. J. Comput. Biol. 19, 455-477. https://doi.org/10.1089/cmb.2012.0021
  2. Bao, E., Jiang, T., and Girke, T. 2014. AlignGraph: Algorithm for secondary de novo genome assembly guided by closely related references. Bioinformatics 30, i319-i328. https://doi.org/10.1093/bioinformatics/btu291
  3. Cho, E., Park, S.N., Lim, Y.K., Shin, Y., Paek, J., Hwang, C.H., Chang, Y.H., and Kook, J.K. 2015. Fusobacterium hwasookii sp. nov., isolated from a human periodontitis lesion. Curr. Microbiol. 70, 169-175. https://doi.org/10.1007/s00284-014-0692-7
  4. Haffajee, A.D. and Socransky, S.S. 1994. Microbial etiological agents of destructive periodontal diseases. Periodontology 2000 5, 78-111. https://doi.org/10.1111/j.1600-0757.1994.tb00020.x
  5. Luo, R., Liu, B., Xie, Y., Li, Z., Huang, W., Yuan, J., He, G., Chen, Y., Pan, Q., Liu, Y., et al. 2012. SOAPdenovo2: An empirically improved memory-efficient short-read de novo assembler. Gigascience 1, 18. Erratum in: Gigascience 2015. 4, 30. https://doi.org/10.1186/2047-217X-1-18
  6. Milsom, S.E., Sprague, S.V., Dymock, D., Weightman, A.J., and Wade, W.G. 1996. Rapid differentiation of Prevotella intermedia and P. nigrescens by 16S rDNA PCR-RFLP. J. Med. Microbiol. 44, 41-43. https://doi.org/10.1099/00222615-44-1-41
  7. Moen, K., Brun, J.G., Valen, M., Skartveit, L., Eribe, E.K., Olsen, I., and Jonsson, R. 2006. Synovial inflammation in active rheumatoid arthritis and psoriatic arthritis facilitates trapping of a variety of oral bacterial DNAs. Clin. Exp. Rheumatol. 24, 656-663.
  8. Okamoto, M., Maeda, N., Kondo, K., and Leung, K.P. 1999. Hemolytic and hemagglutinating activities of Prevotella intermedia and Prevotella nigrescens. FEMS Microbiol. Lett. 178, 299-304. https://doi.org/10.1111/j.1574-6968.1999.tb08691.x
  9. Otto, T.D., Sanders, M., Berriman, M., and Newbold, C. 2010. Iterative correction of reference nucleotides (iCORN) using second generation sequencing technology. Bioinformatics 26, 1704-1707. https://doi.org/10.1093/bioinformatics/btq269
  10. Papapanou, P.N., Neiderud, A.M., Papadimitriou, A., Sandros, J., and Dahlen, G. 2000. "Checkerboard" assessments of periodontal microbiota and serum antibody responses: a case-control study. J. Periodontal. 71, 885-897. https://doi.org/10.1902/jop.2000.71.6.885
  11. Park, S.N., Lim, Y.K., and Kook, J.K. 2013. Development of quantitative real-time PCR primers for detecting 42 oral bacterial species. Arch. Microbiol. 195, 473-482. https://doi.org/10.1007/s00203-013-0896-4
  12. Shah, H.N. and Collins, D.M. 1990. Prevotella, a new genus to include Bacteroides elaninogenicus and related species formerly classified in the genus Bacteroides. Int. J. Syst. Bacteriol. 40, 205-208. https://doi.org/10.1099/00207713-40-2-205