References
- Akbari, E.,Buntat, Z.,Afroozeh, A.,Zeinalinezhad, A., and Nikoukar, A. (2015). Escherichia coli bacteria detection by using graphenebased biosensor. IET Nanobiotechnol. 9, 273-279. https://doi.org/10.1049/iet-nbt.2015.0010
- Amaya-Gonzalez, S., de-los-Santos-Alvarez, N., Miranda-Ordieres, A.J., and Lobo-Castanon, M.J. (2013). Aptamer-based analysis:a promising alternative for food safety control. Sensors 13, 16292-16311. https://doi.org/10.3390/s131216292
- Arora, P., Sindhu, A., Dilbaghi, N., and Chaudhury, A. (2011). Biosensors as innovative tools for the detection of food borne pathogens. Biosens. Bioelectron. 28, 1-12. https://doi.org/10.1016/j.bios.2011.06.002
- Arthur, T.M., Bosilevac, J.M., Nou, X., and Koohmaraie, M. (2005). Evaluation of culture- and PCR-based detection methods for Escherichia coli O157:H7 in inoculated ground beeft. J. Food Protection 68, 1566-1574. https://doi.org/10.4315/0362-028X-68.8.1566
- Brosel-Oliu, S., Uria, N., Abramova, N., and Bratov, A. (2015). Impedimetric sensors for bacteria detection, biosensors - micro and nanoscale applications. In nanotechnology and nanomaterials. Biosensors - Micro and Nanoscale Applications", T. Rinken, ed.
- Burrs, S.L., Bhargava, M., Sidhu, R., Kiernan-Lewis, J., Gomes, C., Claussen, J.C., and McLamore, E.S. (2016). A paper based graphene-nanocauliflower hybrid composite for point of care biosensing. Biosens. Bioelectron. 85, 479-487. https://doi.org/10.1016/j.bios.2016.05.037
- Concepcion, J., Witte, K., Wartchow, C., Choo, S., Yao, D., Persson, H., Wei, J., Li, P., Heidecker, B., Ma, W., et al. (2009). Label-free detection of biomolecular interactions using BioLayer interferometry for kinetic characterization. Comb. Chem. High Throughput Screen. 12, 791-800. https://doi.org/10.2174/138620709789104915
- Corpet, F. (1988). Multiple sequence alignment with hierarchical clustering. Nucleic. Acids Res. 16, 10881-10890. https://doi.org/10.1093/nar/16.22.10881
- Dua, P., S, S., Kim, S., and Lee, D.K. (2015). ALPPL2 aptamermediated targeted delivery of 5-Fluoro-2'-Deoxyuridine to pancreatic cancer. Nucleic Acid Ther. 25, 180-187. https://doi.org/10.1089/nat.2014.0516
- Guo, X., Kulkarni, A., Doepke, A., Halsall, H.B., Iyer, S., and Heineman, W.R. (2012). Carbohydrate-based label-free detection of Escherichia coli ORN 178 using electrochemical impedance spectroscopy. Anal. Chem. 84, 241-246. https://doi.org/10.1021/ac202419u
- Huang, C.J., Dostalek, J., Sessitsch, A., and Knoll, W. (2011). Longrange surface plasmon-enhanced fluorescence spectroscopy biosensor for ultrasensitive detection of E. coli O157:H7. Anal. Chem. 83, 674-677. https://doi.org/10.1021/ac102773r
- Kammer, M.N., Olmsted, I.R., Kussrow, A.K., Morris, M.J., Jackson, G.W., and Bornhop, D.J. (2014). Characterizing aptamer small molecule interactions with backscattering interferometry. Analyst 139, 5879-5884. https://doi.org/10.1039/C4AN01227E
- Kim, Y.S., Song, M.Y., Jurng, J., and Kim, B.C. (2013). Isolation and characterization of DNA aptamers against Escherichia coli using a bacterial cell-systematic evolution of ligands by exponential enrichment approach. Anal. Biochem. 436, 22-28. https://doi.org/10.1016/j.ab.2013.01.014
- Koedrith, P.,Thasiphu, T., Weon, J.I., Boonprasert, R., Tuitemwong, K., and Tuitemwong, P. (2015). Recent trends in rapid environmental monitoring of pathogens and toxicants: potential of nanoparticle-based biosensor and applications. ScientificWorldJournal 2015, 510982.
- Lazcka, O., Del Campo, F.J., and Munoz, F.X. (2007). Pathogen detection: a perspective of traditional methods and biosensors. Biosens. Bioelectron. 22, 1205-1217. https://doi.org/10.1016/j.bios.2006.06.036
- Leclerc, H., Mossel, D.A., Edberg, S.C., and Struijk, C.B. (2001). Advances in the bacteriology of the coliform group: their suitability as markers of microbial water safety. Ann. Rev. Microbiol. 55, 201-234. https://doi.org/10.1146/annurev.micro.55.1.201
- Lee, H.J., Kim, B.C., Kim, K.W., Kim, Y.K., Kim, J., and Oh, M.K. (2009). A sensitive method to detect Escherichia coli based on immunomagnetic separation and real-time PCR amplification of aptamers. Biosens. Bioelectron. 24, 3550-3555. https://doi.org/10.1016/j.bios.2009.05.010
- Lee, Y.J., Han, S.R., Maeng, J.S., Cho, Y.J., and Lee, S.W. (2012). In vitro selection of Escherichia coli O157:H7-specific RNA aptamer. Biochem. Biophys. Res. Commun. 417, 414-420. https://doi.org/10.1016/j.bbrc.2011.11.130
- Li, Y., Afrasiabi, R., Fathi, F., Wang, N., Xiang, C., Love, R., She, Z., and Kraatz, H.B. (2014). Impedance based detection of pathogenic E. coli O157:H7 using a ferrocene-antimicrobial peptide modified biosensor. Biosens. Bioelectron. 58, 193-199. https://doi.org/10.1016/j.bios.2014.02.045
- Matzura, O., and Wennborg, A. (1996). RNAdraw: an integrated program for RNA secondary structure calculation and analysis under 32-bit Microsoft Windows. Comput. Appl. Biosci. 12, 247-249.
- Mechaly, A., Cohen, H., Cohen, O., and Mazor, O. (2016). A biolayer interferometry-based assay for rapid and highly sensitive detection of biowarfare agents. Anal. Biochem. 506, 22-27. https://doi.org/10.1016/j.ab.2016.04.018
- Nistor, C., Osvik, A., Davidsson, R., Rose, A., Wollenberger, U., Pfeiffer, D., Emneus, J., and Fiksdal, L. (2002). Detection of Escherichia coli in water by culture-based amperometric and luminometric methods. Water Sci Technol. 45, 191-199.
- Ozalp, V.C., Bayramoglu, G., Kavruk, M., Keskin, B.B., Oktem, H.A., and Arica, M.Y. (2014). Pathogen detection by core-shell type aptamer-magnetic preconcentration coupled to real-time PCR. Anal. Biochem. 447, 119-125. https://doi.org/10.1016/j.ab.2013.11.022
- Pandey, C.M., Tiwari, I., Sumana, G. (2014). Hierarchical cystine flower based electrochemical genosensor for detection of Escherichia coli O157:H7. RSC Adv. 4, 31047-31055. https://doi.org/10.1039/C4RA04511D
- Paniel, N., Baudart, J., Hayat, A., and Barthelmebs, L. (2013). Aptasensor and genosensor methods for detection of microbes in real world samples. Methods 64, 229-240. https://doi.org/10.1016/j.ymeth.2013.07.001
- Park, S., Kim, H., Paek, S.H., Hong, J.W., and Kim, Y.K. (2008). Enzyme-linked immuno-strip biosensor to detect Escherichia coli O157:H7. Ultramicroscopy 108, 1348-1351. https://doi.org/10.1016/j.ultramic.2008.04.063
- Park, H.C., Baig, I.A., Lee, S.C., Moon, J.Y., and Yoon, M.Y. (2014). Development of ssDNA aptamers for the sensitive detection of Salmonella typhimurium and Salmonella enteritidis. Appl. Biochem. Biotechnol 174, 793-802. https://doi.org/10.1007/s12010-014-1103-z
- Robbens, J., Dardenne, F., Devriese, L., De Coen, W., and Blust, R. (2010). Escherichia coli as a bioreporter in ecotoxicology. App. Microbiol. Biotechnol. 88, 1007-1025. https://doi.org/10.1007/s00253-010-2826-6
- Settu, K., Chen, C.J., Liu, J.T., Chen, C.L., and Tsai, J.Z. (2015). Impedimetric method for measuring ultra-low E. coli concentrations in human urine. Biosens. Bioelectron. 66, 244-250. https://doi.org/10.1016/j.bios.2014.11.027
- Suh, S.H., Dwivedi, H.P., Choi, S.J., and Jaykus, L.A. (2014). Selection and characterization of DNA aptamers specific for Listeria species. Anal. Biochem. 459, 39-45. https://doi.org/10.1016/j.ab.2014.05.006
- Tortorello, M.L. (2003). Indicator organisms for safety and quality--uses and methods for detection: minireview. J. AOAC Int. 86, 1208-1217.
- Wang, H., Wang, Y., Jinghua, S.L., Xu, Y.W., Guo, Y., and Huang, J. (2014). An RNA aptamer-based electrochemical biosensor for sensitive detection of malachite green. RSC Adv. 4, 60987-60994 https://doi.org/10.1039/C4RA09850A
- Wu, W., Zhang, J., Zheng, M., Zhong, Y., Yang, J., Zhao, Y., Wu, W., Ye, W., Wen, J., Wang, Q., et al. (2012). An aptamer-based biosensor for colorimetric detection of Escherichia coli O157:H7. PloS One 7, e48999. https://doi.org/10.1371/journal.pone.0048999
- Zichel, R., Chearwae, W., Pandey, G.S., Golding, B., and Sauna, Z.E. (2012). Aptamers as a sensitive tool to detect subtle modifications in therapeutic proteins. PloS One 7, e31948. https://doi.org/10.1371/journal.pone.0031948
Cited by
- Critical Review: DNA Aptasensors, Are They Ready for Monitoring Organic Pollutants in Natural and Treated Water Sources? vol.52, pp.16, 2016, https://doi.org/10.1021/acs.est.8b00558
- Oligonucleotide aptamers: promising and powerful diagnostic and therapeutic tools for infectious diseases vol.77, pp.2, 2016, https://doi.org/10.1016/j.jinf.2018.04.007
- Application of Aptamer-Based Biosensor for Rapid Detection of Pathogenic Escherichia coli vol.18, pp.8, 2018, https://doi.org/10.3390/s18082518
- Comparison of Economically Favourable and Further Development Friendly DNA Isolation Methods from Microbial Cultures vol.10, pp.1, 2020, https://doi.org/10.4236/aim.2020.101001
- Research advances of DNA aptasensors for foodborne pathogen detection vol.60, pp.14, 2020, https://doi.org/10.1080/10408398.2019.1636763
- Binding Characteristics Study of DNA based Aptamers for E. coli O157:H7 vol.26, pp.1, 2016, https://doi.org/10.3390/molecules26010204
- Enlarging the Toolbox Against Antimicrobial Resistance: Aptamers and CRISPR-Cas vol.12, pp.None, 2016, https://doi.org/10.3389/fmicb.2021.606360
- Aptamers and Aptamer-Coupled Biosensors to Detect Water-Borne Pathogens vol.12, pp.None, 2021, https://doi.org/10.3389/fmicb.2021.643797
- A Low-Field Magnetic Resonance Imaging Aptasensor for the Rapid and Visual Sensing of Pseudomonas aeruginosa in Food, Juice, and Water vol.93, pp.24, 2016, https://doi.org/10.1021/acs.analchem.1c01669
- Electrochemical aptasensor for Escherichia coli O157:H7 bacteria detection using a nanocomposite of reduced graphene oxide, gold nanoparticles and polyvinyl alcohol vol.13, pp.27, 2016, https://doi.org/10.1039/d1ay00563d