References
- Abe, H., Urao, T., Ito, T., Seki, M., Shinozaki, K., and Yamaguchi- Shinozaki, K. (2003). Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling. Plant Cell 15, 63-78. https://doi.org/10.1105/tpc.006130
- Adamczyk, B.J., and Fernandez, D.E. (2009). MIKC* MADS domain heterodimers are required for pollen maturation and tube growth in Arabidopsis. Plant Physiol. 149, 1713-1723. https://doi.org/10.1104/pp.109.135806
- Backues, S.K., Korasick, D.A., Heese, A., and Bednarek, S.Y. (2010). The Arabidopsis dynamin-related protein2 family is essential for gametophyte development. Plant Cell 22, 3218- 3231. https://doi.org/10.1105/tpc.110.077727
- Bailey, T.L., Boden, M., Buske, F.A., Frith, M., Grant, C.E., Clementi, L., Ren, J., Li, W.W., and Noble, W.S. (2009). MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res. 37, W202-208. https://doi.org/10.1093/nar/gkp335
- Bate, N., and Twell, D. (1998). Functional architecture of a late pollen promoter: pollen-specific transcription is developmentally regulated by multiple stage-specific and co-dependent activator elements. Plant Mol. Biol. 37, 859-869. https://doi.org/10.1023/A:1006095023050
- Boavida, L.C., Shuai, B., Yu, H.J., Pagnussat, G.C., Sundaresan, V., and McCormick, S. (2009). A collection of Ds insertional mutants associated with defects in male gametophyte development and function in Arabidopsis thaliana. Genetics 181, 1369-1385. https://doi.org/10.1534/genetics.108.090852
- Borg, M., Brownfield, L., Khatab, H., Sidorova, A., Lingaya, M., and Twell, D. (2011). The R2R3 MYB transcription factor DUO1 activates a male germline-specific regulon essential for sperm cell differentiation in Arabidopsis. Plant Cell 23, 534-549. https://doi.org/10.1105/tpc.110.081059
- Borg, M., Rutley, N., Kagale, S., Hamamura, Y., Gherghinoiu, M., Kumar, S., Sari, U., Esparza-Franco, M.A., Sakamoto, W., Rozwadowski, K., et al. (2014). An EAR-dependent regulatory module promotes male germ cell division and sperm fertility in Arabidopsis. Plant Cell 26, 2098-2113. https://doi.org/10.1105/tpc.114.124743
- Cai, Z., Liu, J., Wang, H., Yang, C., Chen, Y., Li, Y., Pan, S., Dong, R., Tang, G., Barajas-Lopez Jde, D., et al. (2014). GSK3-like kinases positively modulate abscisic acid signaling through phosphorylating clade III SnRK2s in Arabidopsis. Proc. Natl. Acad. Sci. USA 111, 9651-9656. https://doi.org/10.1073/pnas.1316717111
- Charrier, B., Champion, A., Henry, Y., and Kreis, M. (2002). Expression profiling of the whole Arabidopsis shaggy-like kinase multigene family by real-time reverse transcriptase-polymerase chain reaction. Plant Physiol. 130, 577-590. https://doi.org/10.1104/pp.009175
- Claisse, G., Charrier, B., and Kreis, M. (2007). The Arabidopsis thaliana GSK3/Shaggy like kinase AtSK3-2 modulates floral cell expansion. Plant Mol. Biol. 64, 113-124. https://doi.org/10.1007/s11103-007-9138-y
- Clough, S.J., and Bent, A.F. (1998). Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16, 735-743. https://doi.org/10.1046/j.1365-313x.1998.00343.x
- Coppe, A., Ferrari, F., Bisognin, A., Danieli, G.A., Ferrari, S., Bicciato, S., and Bortoluzzi, S. (2009). Motif discovery in promoters of genes co-localized and co-expressed during myeloid cells differentiation. Nucleic Acids Res. 37, 533-549. https://doi.org/10.1093/nar/gkn948
- Dal Santo, S., Stampfl, H., Krasensky, J., Kempa, S., Gibon, Y., Petutschnig, E., Rozhon, W., Heuck, A., Clausen, T., and Jonaka, C. (2004). Stress-induced GSK3 regulates the Redox stress response by phosphorylating glucose-6-phosphate dehydrogenase in Arabidopsis. Plant Cell 24, 3380-3392.
- de Folter, S., Immink, R.G., Kieffer, M., Parenicova, L., Henz, S.R., Weigel, D., Busscher, M., Kooiker, M., Colombo, L., et al. (2005). Comprehensive interaction map of the Arabidopsis MADS Box transcription factors. Plant Cell 17, 1424-1433. https://doi.org/10.1105/tpc.105.031831
- de la Fuente van Bentem, S., Anrather, D., Dohnal, I., Roitinger, E., Csaszar, E., Joore, J., Buijnink, J., Carreri, A., Forzani, C., Lorkovic, Z.J., et al. (2008). Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis. J. Proteome Res. 7, 2458-2470. https://doi.org/10.1021/pr8000173
- Dietrich, C.R., Han, G., Chen, M., Berg, R.H., Dunn, T.M., and Cahoon, E.B. (2008). Loss-of-function mutations and inducible RNAi suppression of Arabidopsis LCB2 genes reveal the critical role of sphingolipids in gametophytic and sporophytic cell viability. Plant J. 54, 284-298. https://doi.org/10.1111/j.1365-313X.2008.03420.x
- Doble, B.W., and Woodgett, J.R. (2003). GSK3: tricks of the trade for a multi-tasking kinase. J. Cell. Sci. 116, 1175-1186. https://doi.org/10.1242/jcs.00384
- Dong, X., Feng, H., Xu, M., Lee, J., Kim, Y.K., Lim, Y.P., Piao, Z., Park, Y.D., Ma, H., and Hur, Y. (2013). Comprehensive analysis of genic male sterility-related genes in Brassica rapa using a newly developed Br300K oligomeric chip. PLoS One 8, e72178. https://doi.org/10.1371/journal.pone.0072178
- Dornelas, M.C., Van, Lammeren, A.A., and Kreis, M. (2000). Arabidopsis thaliana SHAGGY-related protein kinases (AtSK11 and 12) function in perianth and gynoecium development. Plant J. 21, 419-429. https://doi.org/10.1046/j.1365-313x.2000.00691.x
- Du, Z., Zhou, X., Ling, Y., Zhang, Z., and Su, Z. (2010). agriGO: a GO analysis toolkit for the agricultural community. Nucleic Acids Res. 38, W64-70. https://doi.org/10.1093/nar/gkq310
- Feng, B., Lu, D., Ma, X., Peng, Y., Sun, Y., Ning, G., and Ma, H. (2012). Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen development. Plant J. 72, 612-624. https://doi.org/10.1111/j.1365-313X.2012.05104.x
- Filichkin, S.A., Leonard, J.M., Monteros, A., Liu, P.P., and Nonogaki, H. (2004). A novel endo-beta-mannanase gene in tomato LeMAN5 is associated with anther and pollen development. Plant physiol. 134, 1080-1087. https://doi.org/10.1104/pp.103.035998
- Frame, S, and Cohen, P. (2001). GSK3 takes centre stage more than 20 years after its discovery. Biochem. J. 359, 1-16. https://doi.org/10.1042/0264-6021:3590001
- Gao, J., Thelen, J.J., Dunker, A.K., and Xu, D. (2010). Musite, a tool for global prediction of general and kinase-specific phosphorylation sites. Mol. Cell. Proteomics 9, 2586-2600. https://doi.org/10.1074/mcp.M110.001388
- Gibalova, A., Renak, D., Matczuk, K., Dupl'akova, N., Chab, D., Twell, D., and Honys, D. (2009). AtbZIP34 is required for Arabidopsis pollen wall patterning and the control of several metabolic pathways in developing pollen. Plant Mol. Biol. 70, 581-601. https://doi.org/10.1007/s11103-009-9493-y
- Guan, Y., Meng, X., Khanna, R., LaMontagne, E., Liu, Y., and Zhang, S. (2014). Phosphorylation of a WRKY transcription factor by MAPKs is required for pollen development and function in Arabidopsis. PLoS Genet. 10, e1004384. https://doi.org/10.1371/journal.pgen.1004384
- Gupta, R., Ting, J.T., Sokolov, L.N., Johnson, S.A., and Luan, S. (2002). A tumor suppressor homolog, AtPTEN1, is essential for pollen development in Arabidopsis. Plant Cell 14, 2495-2507. https://doi.org/10.1105/tpc.005702
- Higo, K., Ugawa, Y., Iwamoto, M., and Korenaga, T. (1999). Plant cis-acting regulatory DNA elements (PLACE) database: 1999. Nucleic Acids Res. 27, 297-300. https://doi.org/10.1093/nar/27.1.297
- Iwata, Y., Nishino, T., Iwano, M., Takayama, S., and Koizumi, N. (2012). Role of the plant-specific endoplasmic reticulum stressinducible gene TIN1 in the formation of pollen surface structure in Arabidopsis thaliana. Plant Biotechnol. 29, 51-56. https://doi.org/10.5511/plantbiotechnology.11.1228a
- Javelle, M., Marco, C.F., and Timmermans, M. (2011). In situ hybridization for the precise localization of transcripts in plants. J. Vis. Exp. 57, e3328.
- Jonak, C., and Hirt, H. (2002). Glycogen synthase kinase 3/SHAGGY-like kinases in plants: an emerging family with novel functions. Trends Plant Sci. 7, 457-461. https://doi.org/10.1016/S1360-1385(02)02331-2
- Jope, R.S., and Johnson, G.V. (2004). The glamour and gloom of glycogen synthase kinase-3. Trends Biochem. Sci. 29, 95-102. https://doi.org/10.1016/j.tibs.2003.12.004
- Kaidanovich-Beilin, O., and Woodgett, J.R. (2011). GSK-3: functional insights from cell biology and animal models. Front. Mol. Neurosci. 4, 40.
- Kim, T., Guan, S., Sun, Y., Deng, Z., Tang, W., Shang, J., Sun, Y., Burlingame, A.L., and Wang Z. (2009). Brassinosteroid signal transduction from cell-surface receptor kinases to nuclear transcription factors. Nat. Cell Biol. 11, 1254-1260. https://doi.org/10.1038/ncb1970
- Kofuji, R., Sumikawa, N., Yamasaki, M., Kondo, K., Ueda, K., Ito, M., and Hasebe, M. (2003). Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses. Mol. Biol. Evol. 20, 1963-1977. https://doi.org/10.1093/molbev/msg216
- Kondo, Y., Ito, T., Nakagami, H., Hirakawa, Y., Saito, M., Tamaki, T., Shirasu, K., and Fukuda, H. (2014). Plant GSK3 proteins regulate xylem cell differentiation downstream of TDIF-TDR signalling. Nat. Commun. 5, 3504.
- Larkin, M.A., Blackshields, G., Brown, N.P., Chenna, R., McGettigan, P.A., McWilliam, H., Valentin, F., Wallace, I.M., Wilm, A., Lopez, R., et al. (2007). Clustal W and Clustal X version 2.0. Bioinformatics 23, 2947-2948. https://doi.org/10.1093/bioinformatics/btm404
- Li, J., and Nam, K.H. (2002). Regulation of brassinosteroid signaling by GSK3/SHAGGY-like kinase. Science 295, 1299-1301.
- Liu, J., Zhang, Y., Qin, G., Tsuge, T., Sakaguchi, N., Luo, G., Sun, K., Shi, D., Aki, S., Zheng N., et al. (2008). Targeted degradation of the cyclin-dependent kinase inhibitor ICK4/KRP6 by RINGtype E3 ligases is essential for mitotic cell cycle progression during Arabidopsis gametogenesis. Plant Cell 20, 1538-1554. https://doi.org/10.1105/tpc.108.059741
- Ma, H. (2005). Molecular genetic analyses of microsporogenesis and microgametogenesis in flowering plants. Annu. Rev. Plant Biol. 56, 393-434. https://doi.org/10.1146/annurev.arplant.55.031903.141717
- Moon, S., Kim, S.R., Zhao, G., Yi, J., Yoo, Y., Jin, P., Lee, S.W., Jung, K.H., Zhang, D., An, G. (2013). Rice glycosyltransferase1 encodes a glycosyltransferase essential for pollen wall formation. Plant Physiol. 161, 663-675. https://doi.org/10.1104/pp.112.210948
- Peterson, R., Slovin, J.P., and Chen C. (2010). A simplified method for differential staining of aborted and non-aborted pollen grains. Int. J. Plant Biol. 1, e13. https://doi.org/10.4081/pb.2010.e13
- Phan, H.A., Iacuone, S., Li, S.F., and Parish, R.W. (2011). The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana. Plant Cell. 23, 2209-2224. https://doi.org/10.1105/tpc.110.082651
- Piao, H.L., Lim, J.H., Kim, S.J., Cheong, G.W., and Hwang, I. (2001). Constitutive over-expression of AtGSK1 induces NaCL stress response in the absence of NaCl stress and results in enhanced NaCl tolerance in Arabidopsis. Plant J. 27, 305-314. https://doi.org/10.1046/j.1365-313x.2001.01099.x
- Renak, D., Dupl'akova, N., and Honys, D. (2012). Wide-scale screening of T-DNA lines for transcription factor genes affecting male gametophyte development in Arabidopsis. Sex. Plant Reprod. 25, 39-60. https://doi.org/10.1007/s00497-011-0178-8
- Rozhon, W., Mayerhofer, J., Petutschnig, E., Fujioka, S., and Jonak, C. (2010). ASKtheta, a clade-III Arabidopsis GSK3, functions in the brassinosteroid signalling pathway. Plant J. 62, 215-223. https://doi.org/10.1111/j.1365-313X.2010.04145.x
- Saidi, Y., Hearn, T.J., and Coates, J.C. (2012). Function and evolution of 'green' GSK3/Shaggy-like kinases. Trends Plant Sci. 17, 39-46. https://doi.org/10.1016/j.tplants.2011.10.002
- Sancenon, V., Puig, S., Mateu-Andres, I., Dorcey, E., Thiele, D.J., and Penarrubia L. (2004). The Arabidopsis copper transporter COPT1 functions in root elongation and pollen development. J. Biol. Chem. 279, 15348-15355. https://doi.org/10.1074/jbc.M313321200
- Sanders, P.M., Bui, A.Q., Weterings, K., McIntire, K., Hsu, Y.-C., Lee, P.Y., Truong, M.T., Beals, T., and Goldberg, R. (1999). Anther developmental defects in Arabidopsis thaliana malesterile mutants. Sex. Plant Reprod. 11, 297-322. https://doi.org/10.1007/s004970050158
-
Schiott, M., Romanowsky, S.M., Baekgaard, L., Jakobsen, M.K., Palmgren, M.G., and Harper, J.F. (2004). A plant plasma membrane
$Ca^{2+}$ pump is required for normal pollen tube growth and fertilization. Proc. Natl. Acad. Sci. USA 101, 9502-9507. https://doi.org/10.1073/pnas.0401542101 - Shannon, P., Markiel, A., Ozier, O., Baliga, N.S., Wang, J.T., Ramage, D., Amin, N., Schwikowski, B., Ideker, T. (2003). Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 13, 2498-2504. https://doi.org/10.1101/gr.1239303
- Smyth, D.R., Bowman, J.L., and Meyerowitz, E.M. (1990). Early flower development in Arabidopsis. Plant Cell 2, 755-767. https://doi.org/10.1105/tpc.2.8.755
- Sonnhammer, E.L., and Ostlund, G. (2015). InParanoid 8: orthology analysis between 273 proteomes, mostly eukaryotic. Nucleic Acids Res. 43, D234-239. https://doi.org/10.1093/nar/gku1203
- Soto, G., Alleva, K., Mazzella, M.A., Amodeo, G., and Muschietti, J.P. (2008). AtTIP1;3 and AtTIP5;1, the only highly expressed Arabidopsis pollen-specific aquaporins, transport water and urea. FEBS Lett. 582, 4077-4082. https://doi.org/10.1016/j.febslet.2008.11.002
- Soto, G., Fox, R., Ayub, N., Alleva, K., Guaimas, F., Erijman, E.J., Mazzella, A., Amodeo, G., and Muschietti, J. (2010). TIP5;1 is an aquaporin specifically targeted to pollen mitochondria and is probably involved in nitrogen remobilization in Arabidopsis thaliana. Plant J. 64, 1038-1047. https://doi.org/10.1111/j.1365-313X.2010.04395.x
- Tamura, K., Stecher, G., Peterson, D., Filipski, A., and Kumar, S. (2013). MEGA6: molecular evolutionary genetics analysis version 6.0. Mol. Biol. Evol. 30, 2725-2729. https://doi.org/10.1093/molbev/mst197
- Tichtinsky, G., Tavares, R., Takvorian, A., Schwebel-Dugue, N., Twell, D., and Kreis, M. (1998). An evolutionary conserved clade of plant GSK-3/shaggy-like protein kinase genes preferentially expressed in developing pollen. Biochim. Biophys. Acta 1442, 261-273. https://doi.org/10.1016/S0167-4781(98)00187-0
- Toufighi, K., Brady, S.M., Austin, R., Ly, E., and Provart, N.J. (2005). The botany array resource: e-Northerns, expression angling, and promoter analyses. Plant J. 43, 153-163. https://doi.org/10.1111/j.1365-313X.2005.02437.x
- Twell, D. (2011). Male gametogenesis and germline specification in flowering plants. Sex. Plant Reprod. 24, 149-160. https://doi.org/10.1007/s00497-010-0157-5
- Wang, R.S., Pandey, S., Li, S., Gookin, T.E., Zhao, Z., Albert, R., and Assmann, S.M. (2011). Common and unique elements of the ABA-regulated transcriptome of Arabidopsis guard cells. BMC Genomics 12, 216. https://doi.org/10.1186/1471-2164-12-216
- Wang, C., Shang, J.X., Chen, Q.X., Oses-Prieto, J.A., Bai, M.Y., Yang, Y., Yuan, M., Zhang, Y.L., Mu, C.C., Deng Z., et al. (2013a). Identification of BZR1-interacting proteins as potential components of the brassinosteroid signaling pathway in Arabidopsis through tandem affinity purification. Mol. Cell. Proteomics 12, 3653-3665. https://doi.org/10.1074/mcp.M113.029256
- Wang, L., Wang, W., Wang, Y.Q., Liu, Y.Y., Wang, J.X., Zhang, X.Q., Ye, D., and Chen, L.Q. (2013b). Arabidopsis galacturonosyltransferase (GAUT) 13 and GAUT14 have redundant functions in pollen tube growth. Mol. Plant 6, 1131-1148. https://doi.org/10.1093/mp/sst084
- Wellmer, F., Riechmann, J.L., Alves-Ferreira, M., and Meyerowitz, E.M. (2004). Genome-wide analysis of spatial gene expression in Arabidopsis flowers. Plant Cell 16, 1314-1326. https://doi.org/10.1105/tpc.021741
- Wijeratne, A.J., Zhang, W., Sun, Y., Liu, W., Albert, R., Zheng, Z., Oppenheimer, D.G., Zhao, D., and Ma, H. (2007). Differential gene expression in Arabidopsis wild-type and mutant anthers: insights into anther cell differentiation and regulatory networks. Plant J. 52, 14-29. https://doi.org/10.1111/j.1365-313X.2007.03217.x
- Winter, D., Vinegar, B., Nahal, H., Ammar, R., Wilson, G.V., and Provart, N.J. (2007). An "Electronic Fluorescent Pictograph" browser for exploring and analyzing large-scale biological data sets. PLoS ONE 2, e718. https://doi.org/10.1371/journal.pone.0000718
- Xu, H., Knox, R.B., Taylor, P.E., and Singh, M.B. (1995). Bcp1, a gene required for male sterility in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 92, 2106-2110. https://doi.org/10.1073/pnas.92.6.2106
- Xu, J., Yang, C., Yuan, Z., Zhang, D., Gondwe, M.Y., Ding, Z., Liang, W., Zhang, D., and Wilson, Z.A. (2010). The ABORTED MICROSPORES regulatory network is required for postmeiotic male reproductive development in Arabidopsis thaliana. Plant Cell 22, 91-107. https://doi.org/10.1105/tpc.109.071803
- Yan, Z., Zhao, J., Peng, P., Chihara, R.K., and Li, J. (2009). BIN2 functions redundantly with other Arabidopsis GSK3-like kinases to regulate brassicnosteroid signaling. Plant Physiol. 150, 710-721. https://doi.org/10.1104/pp.109.138099
- Yang, T.J., Kim, J.S., Lim, K.B., Kwon, S.J., Kim, J.A., Jin, M., Park, J.Y., Lim, M.H., Kim, H., Kim, S.H., et al. (2005). The Korea Brassica genome project: a glimpse of the Brassica genome based on comparative genome analysis with Arabidopsis. Comp. Funct. Genomics 6, 138-146. https://doi.org/10.1002/cfg.465
- Yang, C., Vizcay-Barrena, G., Conner, K., and Wilson, Z.A. (2007). MALE STERILITY1 is required for tapetal development and pollen wall biosynthesis. Plant Cell 19, 3530-3548. https://doi.org/10.1105/tpc.107.054981
- Yang, J., Wu, J., Romanovicz, D., Clark, G., and Roux, S.J. (2013). Co-regulation of exine wall patterning, pollen fertility and anther dehiscence by Arabidopsis apyrases 6 and 7. Plant Physiol. Biochem. 69, 62-73. https://doi.org/10.1016/j.plaphy.2013.04.022
- Zhang, S., Cai, Z., and Wang, X. (2009). The primary signaling outputs of brassinosteroids are regulated by abscisic acid signaling. Proc. Natl. Acad. Sci. USA. 106, 4543-4548. https://doi.org/10.1073/pnas.0900349106
- Zhao, J., Peng, P., Schmitz, R.J., Decker, A.D., Tax, F.E., and Li, J. (2002). Two putative BIN2 substrates are nuclear components of brassinosteroid signaling. Plant Physiol. 130, 1221-1229. https://doi.org/10.1104/pp.102.010918
- Zhu, J., Chen, H., Li, H., Gao, J.F., Jiang, H., Wang, C., Guan, Y.F., and Yang, Z.N. (2008). Defective in tapetal development and function 1 is essential for anther development and tapetal function for microspore maturation in Arabidopsis. Plant J. 55, 266-277. https://doi.org/10.1111/j.1365-313X.2008.03500.x
- Zuberi, K., Franz, M., Rodriguez, H., Montojo, J., Lopes, C.T., Bader, G.D., and Morris, Q. (2013). GeneMANIA prediction server 2013 update. Nucleic Acids Res. 41, W115-122 https://doi.org/10.1093/nar/gkt533
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