Genomics & Informatics

Korea Genome Organization (한국유전체학회)
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Relevance Epistasis Network of Gastritis for Intra-chromosomes in the Korea Associated Resource (KARE) Cohort Study

  • Jeong, Hyun-hwan (Department of Information and Computer Engineering, Ajou University) ;
  • Sohn, Kyung-Ah (Department of Information and Computer Engineering, Ajou University)
  • Received : 2014.07.08
  • Accepted : 2014.11.11
  • Published : 2014.12.31
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Abstract

Gastritis is a common but a serious disease with a potential risk of developing carcinoma. Helicobacter pylori infection is reported as the most common cause of gastritis, but other genetic and genomic factors exist, especially single-nucleotide polymorphisms (SNPs). Association studies between SNPs and gastritis disease are important, but results on epistatic interactions from multiple SNPs are rarely found in previous genome-wide association (GWA) studies. In this study, we performed computational GWA case-control studies for gastritis in Korea Associated Resource (KARE) data. By transforming the resulting SNP epistasis network into a gene-gene epistasis network, we also identified potential gene-gene interaction factors that affect the susceptibility to gastritis.

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