참고문헌
- Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215: 403-410.
- Besemer, J. and M. Borodovsky. 2005. GeneMark: Web software for gene finding in prokaryotes, eukaryotes and viruses. Nucleic Acids Res. 33: W451-W454. https://doi.org/10.1093/nar/gki487
- Bjorkroth, K. J., U. Schillinger, R. Geisen, N. Weiss, B. Hoste, W. H. Holzapfel, et al. 2002. Taxonomic study of Weissella confusa and description of Weissella cibaria sp. nov., detected in food and clinical samples. Int. J. Syst. Evol. Microbiol. 52: 141-148.
- Bolotin, A., P. Wincker, S. Mauger, O. Jaillon, K. Malarme, J. Weissenbach, et al. 2001. The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp. lactis IL1403. Genome Res. 11: 731-753. https://doi.org/10.1101/gr.GR-1697R
- Boot, H. J., C. P. Kolen, and P. H. Pouwels. 1995. Identification, cloning, and nucleotide sequence of a silent Slayer protein gene of Lactobacillus acidophilus ATCC 4356 which has extensive similarity with the S-layer protein gene of this species. J. Bacteriol. 177: 7222-7230.
- Bouia, A., F. Bringel, L. Frey, B. Kammerer, A. Belarbi, A. Guyonvarch, and J. C. Hubert. 1989. Structural organization of pLP1, a cryptic plasmid from Lactobacillus plantarum CCM 1904. Plasmid 22: 185-192. https://doi.org/10.1016/0147-619X(89)90001-2
- Carver, T., M. Berriman, A. Tivey, C. Patel, U. Bohme, B. G. Barrell, et al. 2008. Artemis and ACT: Viewing, annotating and comparing sequences stored in a relational database. Bioinformatics 24: 2672-2676. https://doi.org/10.1093/bioinformatics/btn529
- Daming, R., W. Yinyu, W. Zilai, C. Jun, L. Hekui, and Z. Jingye. 2003. Complete DNA sequence and analysis of two cryptic plasmids isolated from Lactobacillus plantarum. Plasmid 50: 70-73. https://doi.org/10.1016/S0147-619X(03)00010-6
- Gros, M. F., H. te Riele, and S. D. Ehrlich. 1987. Rolling circle replication of single-stranded DNA plasmid pC194. EMBO J. 6: 3863-3869.
- Jung, J. Y., S. H. Lee, J. M. Kim, M. S. Park, J.-W. Bae, Y. Hahn, et al. 2011. Metagenomic analysis of kimchi, a traditional Korean fermented food. Appl. Environ. Microbiol. 77: 2264- 2274. https://doi.org/10.1128/AEM.02157-10
- Kang, M. S., J. Chung, S. M. Kim, K. H. Yang, and J. S. Oh. 2006. Effect of Weissella cibaria isolates on the formation of Streptococcus mutans biofilm. Caries Res. 40: 418-425. https://doi.org/10.1159/000094288
- Kang, M. S., B. G. Kim, J. Chung, H. C. Lee, and J. S. Oh. 2006. Inhibitory effect of Weissella cibaria isolates on the production of volatile sulphur compounds. J. Clin. Periodontol. 33: 226-232. https://doi.org/10.1111/j.1600-051X.2006.00893.x
- Kim, D.-S., S.-H. Choi, D.-W. Kim, S.-H. Nam, R. N. Kim, A. Kang, et al. 2011. Genome sequence of Weissella cibaria KACC 11862. J. Bacteriol. 193: 797-798. https://doi.org/10.1128/JB.01342-10
- Kleerebezem, M., J. Boekhorst, R. van Kranenburg, D. Molenaar, O. P. Kuipers, R. Leer, et al. 2003. Complete genome sequence of Lactobacillus plantarum WCFS1. Proc. Natl. Acad. Sci. USA 100: 1990-1995. https://doi.org/10.1073/pnas.0337704100
- Marchler-Bauer, A., J. B. Anderson, F. Chitsaz, M. K. Derbyshire, C. DeWeese-Scott, J. H. Fong, et al. 2009. CDD: Specific functional annotation with the conserved domain database. Nucleic Acids Res. 37: D205-D210. https://doi.org/10.1093/nar/gkn845
- O'Brien, F. G., C. Price, W. B. Grubb, and J. E. Gustafson. 2002. Genetic characterization of the fusidic acid and cadmium resistance determinants of Staphylococcus aureus plasmid pUB101. J. Antimicrob. Chemother. 50: 313-321. https://doi.org/10.1093/jac/dkf153
- Oh, H. M., Y. J. Cho, B. K. Kim, J. H. Roe, S. O. Kang, B. H. Nahm, et al. 2010. Complete genome sequence analysis of Leuconostoc kimchii IMSNU 11154. J. Bacteriol. 192: 3844- 3845. https://doi.org/10.1128/JB.00508-10
- Park, M. S., S. H. Kim, J. D. Kim, S. E. Oh, K. J. Park, S. K. Lee, et al. 2007. Molecular characterization of plasmid DNA from Weisselia cibaria isolated from kimchi. Kor. J. Genet. 29: 29-35.
- Park, M. S., D. W. Shin, K. H. Lee, and G. E. Ji. 1999. Sequence analysis of plasmid pKJ50 from Bifidobacterium longum. Microbiology 145: 585-592. https://doi.org/10.1099/13500872-145-3-585
- Park, W. J., K. H. Lee, J. M. Lee, H. J. Lee, J. H. Kim, J.-H. Lee, et al. 2004. Characterization of pC7 from Lactobacillus paraplantarum C7 derived from kimchi and development of lactic acid bacteria-Escherichia coli shuttle vector. Plasmid 52: 84-88. https://doi.org/10.1016/j.plasmid.2004.05.001
- Pavlova, S. I., A. O. Kilic, L. Topisirovic, N. Miladinov, C. Hatzos, and L. Tao. 2002. Characterization of a cryptic plasmid from Lactobacillus fermentum KC5b and its use for constructing a stable Lactobacillus cloning vector. Plasmid 47: 182-192. https://doi.org/10.1016/S0147-619X(02)00005-7
- Sambrook, J. and D. W. Russell. 2001. Molecular Cloning: A Laboratory Manual, 3rd Ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
- Skaugen, M. 1989. The complete nucleotide sequence of a small cryptic plasmid from Lactobacillus plantarum. Plasmid 22: 175-179. https://doi.org/10.1016/0147-619X(89)90028-0
- Stiles, M. E. and W. H. Holzapfel. 1997. Lactic acid bacteria of foods and their current taxonomy. Int. J. Food Microbiol. 36: 1-29. https://doi.org/10.1016/S0168-1605(96)01233-0
- Tatusova, T. A. and T. L. Madden. 1999. BLAST 2 sequences, a new tool for comparing protein and nucleotide sequences. FEMS Microbiol. Lett. 174: 247-250. https://doi.org/10.1111/j.1574-6968.1999.tb13575.x
- Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The CLUSTAL_X Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25: 4876-4882. https://doi.org/10.1093/nar/25.24.4876
- Yu, J.-J., H.-J. Park, S.-G. Kim, and S.-H. Oh. 2009. Isolation, identification, and characterization of Weissella strains with high ornithine producing capacity from kimchi. Kor. J. Microbiol. 45: 339-345.
피인용 문헌
- Characterization of a minimal pKW2124 replicon from Weissella cibaria KLC140 and its application for the construction of the Weissella expression vector pKUCm1 vol.6, pp.None, 2013, https://doi.org/10.3389/fmicb.2015.00035
- Genomics of Weissella cibaria with an examination of its metabolic traits vol.161, pp.4, 2013, https://doi.org/10.1099/mic.0.000053
- Surface display on lactic acid bacteria without genetic modification: strategies and applications vol.100, pp.22, 2013, https://doi.org/10.1007/s00253-016-7842-8