References
- Altmann A, Eisenhut M, Bauder-Wust U, et al (2010). Therapy of thyroid carcinoma with the histone deacetylase inhibitor MS-275. Eur J Nucl Med Mol Imaging, 37, 2286-97. https://doi.org/10.1007/s00259-010-1573-3
- Andriole GL, Bostwick DG, Brawley OW, et al (2010). Effect of dutasteride on the risk of prostate cancer. N Engl J Med, 362, 1192-202. https://doi.org/10.1056/NEJMoa0908127
- Aryee MJ, Liu W, Engelmann JC, et al (2013). DNA methylation alterations exhibit intraindividual stability and interindividual heterogeneity in prostate cancer metastases. Sci Transl Med, 5, 169ra10.
- Boorjian SA, Tindall DJ (2013). Molecular Progression of Prostate Cancer: Androgens and Estrogens. Management of Prostate Cancer. Springer.
- Braconi C, Swenson E, Kogure T, et al (2010). Targeting the IL-6 dependent phenotype can identify novel therapies for cholangiocarcinoma. PloS One, 5, e15195. https://doi.org/10.1371/journal.pone.0015195
- Chang JTC, Yang HT, Wang TCV, Cheng AJ (2005). Upstream stimulatory factor (USF) as a transcriptional suppressor of human telomerase reverse transcriptase (hTERT) in oral cancer cells. Mol Carcinog, 44, 183-92. https://doi.org/10.1002/mc.20129
- Daemen A, Gevaert O, De Bie T, et al (2008). Integrating microarray and proteomics data to predict the response on cetuximab in patients with rectal cancer. Pac Symp Biocomput, 2008, 166-77.
- de Bono JS, Logothetis CJ, Molina A, et al (2011). Abiraterone and increased survival in metastatic prostate cancer. N Engl J Med, 364, 1995-2005. https://doi.org/10.1056/NEJMoa1014618
- DeMarzo AM, Nelson WG, Isaacs WB , Epstein JI (2003). Pathological and molecular aspects of prostate cancer. Lancet, 361, 955-64. https://doi.org/10.1016/S0140-6736(03)12779-1
- Diboun I, Wernisch L, Orengo CA, Koltzenburg M (2006). Microarray analysis after RNA amplification can detect pronounced differences in gene expression using limma. BMC Genomics, 7, 252. https://doi.org/10.1186/1471-2164-7-252
- Duncan D, Prodduturi N, Zhang B (2010). WebGestalt2: an updated and expanded version of the Web-based Gene Set Analysis Toolkit. BMC Bioinformatics, 11, 1-. https://doi.org/10.1186/1471-2105-11-1
- Fabbri M, Ivan M, Cimmino A, et al (2007). Regulatory mechanisms of microRNAs involvement in cancer: the strange case of Dr Jekyll and Mr Hyde.
- Gogia S, Puranik M (2013). Solution structures of purine base analogues 6-chloroguanine, 8-azaguanine and allopurinol. J Biomol Struct Dyn, 1-9.
- Harada Y, Ishii I, Hatake K, Kasahara T (2012). Pyrvinium pamoate inhibits proliferation of myeloma/erythroleukemia cells by suppressing mitochondrial respiratory complex I and STAT3. Cancer Lett, 319, 83-8. https://doi.org/10.1016/j.canlet.2011.12.034
- Hulsegge I, Kommadath A , Smits MA (2009). Globaltest and GOEAST: two different approaches for Gene Ontology analysis. BMC Proc, 3, S10.
- Jarius S, Martinez-Garcia P, Hernandez AL, et al (2013). Two new cases of anti-Ca (anti-ARHGAP26/GRAF) autoantibodyassociated cerebellar ataxia. J Neuroinflammation, 10, 1-6. https://doi.org/10.1186/1742-2094-10-1
- Kelder T, van Iersel MP, Hanspers K, et al (2012). WikiPathways: building research communities on biological pathways. Nucleic Acids Res, 40, D1301-7. https://doi.org/10.1093/nar/gkr1074
- Lamb J, Crawford ED, Peck D, et al (2006). The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease. Science, 313, 1929. https://doi.org/10.1126/science.1132939
- Langsenlehner U, Renner W, Yazdani-Biuki B, et al (2006). Integrin alpha-2 and beta-3 gene polymorphisms and breast cancer risk. Breast Cancer Res Treat, 97, 67-72. https://doi.org/10.1007/s10549-005-9089-4
- Liu C, Kelnar K, Liu B, et al (2011). The microRNA miR-34a inhibits prostate cancer stem cells and metastasis by directly repressing CD44. Nat Med, 17, 211-5. https://doi.org/10.1038/nm.2284
- Luo M , Guan JL (2010). Focal adhesion kinase: a prominent determinant in breast cancer initiation, progression and metastasis. Cancer Lett, 289, 127-39. https://doi.org/10.1016/j.canlet.2009.07.005
- Pico AR, Kelder T, Van Iersel MP, et al (2008). WikiPathways: pathway editing for the people. PLoS Biol, 6, e184. https://doi.org/10.1371/journal.pbio.0060184
- Pontes-Junior J, Reis ST, Dall'Oglio M, et al (2009). Evaluation of the expression of integrins and cell adhesion molecules through tissue microarray in lymph node metastases of prostate cancer. J Carcinog, 8, 3. https://doi.org/10.4103/1477-3163.48453
- Porkka KP, Visakorpi T (2004). Molecular mechanisms of prostate cancer. Eur Urol, 45, 683-91. https://doi.org/10.1016/j.eururo.2004.01.012
- Shapiro DJ, Katzenellenbogen B, Hergenrother PJ, Bolton EC (2012). Small molecule inhibitors of steroid receptors for breast and prostate cancer. J Biol Chem, 286, 4043-8.
- Sherman BT, Lempicki RA (2009). Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res, 37, 1-13. https://doi.org/10.1093/nar/gkn923
- Singh PK, Doig CL, Dhiman VK, et al (2012). Epigenetic distortion to VDR transcriptional regulation in prostate cancer cells. J Steroid Biochem Mol Biol, 136, 258-63.
- Smyth GK (2004). Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol, 3, 3.
- Subramanian A, Tamayo P, Mootha VK, et al (2005). Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A, 102, 15545-50. https://doi.org/10.1073/pnas.0506580102
- Sugahara KN, Teesalu T, Karmali PP, et al (2010). Coadministration of a tumor-penetrating peptide enhances the efficacy of cancer drugs. Science, 328, 1031-5. https://doi.org/10.1126/science.1183057
- Taylor BS, Schultz N, Hieronymus H, et al (2010). Integrative genomic profiling of human prostate cancer. Cancer Cell, 18, 11-22. https://doi.org/10.1016/j.ccr.2010.05.026
- Team RC (2011). R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing; 2008. ISBN 3-900051-07-0. Available at: http:// www. R-project.org.
- Zhang B, Kirov S, Snoddy J (2005). WebGestalt: an integrated system for exploring gene sets in various biological contexts. Nucleic Acids Res, 33, W741-8. https://doi.org/10.1093/nar/gki475
- Zhang L, Yang BX, Zhang HT, et al (2011). Prostate cancer: an emerging threat to the health of aging men in Asia. Asian J Androl, 13, 574-8. https://doi.org/10.1038/aja.2010.126
- Zheng Q , Wang XJ (2008). GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis. Nucleic Acids Res, 36, W358-63. https://doi.org/10.1093/nar/gkn276
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