References
- Alves, E., C. Castellanos, C. Ovilo, L. Silio and C. Rodriguez. 2002. Differentiation of the raw material of the Iberian pig meat industry based on the use of amplified fragment length polymorphism. Meat Sci. 61:157-162. https://doi.org/10.1016/S0309-1740(01)00179-6
- Aquadro, C. F. and B. D. Greenberg. 1983. Human mitochondrial DNA variation and evolution: Analysis of nucleotide sequences from seven individuals. Genetics 103:287-312.
- Baker, A. J. and H. D. Marshall. 1997. Mitochondrial control region sequences as tools for understanding evolution. In: Avian molecular evolution and systematic (Ed. D. P. Mindell). Academic press, San Diego. 51-82.
- Bernatchez, L. and C. Landry. 2003. MHC studies in nonmodel vertebrates: what have we learned about natural selectionin 15 years? J. Evol. Biol. 16:363-377. https://doi.org/10.1046/j.1420-9101.2003.00531.x
- Cann, R. L., W. M. Brown and A. C. Wilson. 1984. Polymorphic sites and the mechanism of evolution in human mitochondrial DNA. Genetics 106:479-499.
- Fu, Y., D. Niu and H. Ruan. 2001. Studies of genetic diversity of native chicken breeds in Zhejiang province of China. Acta Genetica Sinica. 28:606-613.
- Fulton, J. E., H. R. Juul-Madsen, C. M. Ashwell, A. M. McCarron, J. A. Arthur, N. P. O'Sullivan and Jr. R. L. Taylor. 2006. Molecular genotype identification of the Gallus gallus major histocompatibility complex. Immunogenetics 58:407-421. https://doi.org/10.1007/s00251-006-0119-0
- Komiyama, T., K. Ikeo and T. Gojobori. 2003. Where is the origin of the Japanese gamecock? Gene 317:195-202. https://doi.org/10.1016/S0378-1119(03)00703-0
- Komiyama, T., K. Ikeo and T. Gojobori. 2004. The evolutionary origin of long-crowing chicken: its evolutionary relationship with fighting cocks disclosed by the mtDNA sequence analysis. Gene. 333:91-99. https://doi.org/10.1016/j.gene.2004.02.035
- Kumar, S., M. Nei, J. Dudley and K. Tamura. 2008. MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief. Bioinform. 9:299-306. https://doi.org/10.1093/bib/bbn017
- Lansman, R. A., J. C. Avise and M. D. Huettel. 1983. Critical experimental test of the possibility of 'paternal leakage' of mitochondrial DNA. Proc. Natl. Acad. Sci. USA. 80:1969-1971. https://doi.org/10.1073/pnas.80.7.1969
- Lei, C. Z., W. Zhang, H. Chen, F. Lu, Q. L. Ge, R. Y. Liu, R. H. Dang, Y. Y. Yao, L. B. Yao, Z. F. Lu and Z. L. Zhao. 2007. Two maternal lineages revealed by mitochondrial DNA dloop sequences in Chinese native water buffaloes (Bubalusbubalis). Asian-Aust. J. Anim. Sci. 20:471-476. https://doi.org/10.5713/ajas.2007.471
- Li, J. L., Y. Shi, C. Fan and D. Manglai. 2008. mtDNA diversity and origin of Chinese Mongolian horses. Asian-Aust. J. Anim. Sci. 21:1696-1702. https://doi.org/10.5713/ajas.2008.80193
- Liu, Z. G., C. Z. Lei, J. Luo, C. Ding, G. H. Chen, H. Chang, K. H. Wang, X. X. Liu, X. Y. Zhang, X. J. Xiao and S. L. Wu. 2004. Genetic variability of mtDNA sequences in Chinese native chicken breeds. Asian-Aust. J. Anim. Sci. 17:903-909. https://doi.org/10.5713/ajas.2004.903
- Liu, Y. P., G. S. Wu, Y. G. Yao, Y. W. Miao, G. Luikart, M. Baig, A. B. Pereira, Z. L. Ding, M. G. Palanichamy and Y. P. Zhang. 2006. Multiple maternal origins of chickens: Out of the Asian jungles. Mol. Phylogenet. Evol. 38:12-19. https://doi.org/10.1016/j.ympev.2005.09.014
- McConnell, S. K., D. A. Dawson, A. Wardle and T. Burke. 1999. The isolation and mapping of 19 tetranucleotide microsatellite markers in the chicken. Anim. Genet. 30:183-189. https://doi.org/10.1046/j.1365-2052.1999.00454.x
- Mindell, D. P., M. D. Sorenson, C. J. Huddleston, H. C. Miranda, A. Knight, S. J. Sawchuk and T. Yuri. 1997. Phylogenetic relationships among and within select avian orders based on mitochondrial DNA. In: Avian molecular evolution and systematic (Ed. D. P. Mindell). Academic press, San Diego. 214-247.
- Moore, W. S. and V. R. Defilippis. 1997. The window of taxonomic resolution for phylogenies based on mitochondrial cytochrome b. In: Avian molecular evolution and systematic (Ed. D. P. Mindell). Academic press, San Diego. 84-119.
- Odahara, S., H. J. Chung, S. H. Choi, S. L. Yu, S. Sasazaki, H. Mannan, C. S. Park and J. H. Lee. 2006. Mitochondrial DNA diversity of Korean native goats. Asian-Aust. J. Anim. Sci. 19:482-485. https://doi.org/10.5713/ajas.2006.482
- Piertney, S. B. and M. K. Oliver. 2006. The evolutionary ecology of the major histocompatibility complex. Heredity 96:7-21.
- Sasazaki, S., K. Itoh, S. Arimitsu, T. Imada, A. Takasuga, H. Nagaishi, S. Takano, H. Mannen and S. Tsuji. 2004. Development of breed identification markers derived from AFLP in beef cattle. Meat Sci. 67:275-280. https://doi.org/10.1016/j.meatsci.2003.10.016
- Sasazaki, S., S. Odahara, C. Hiura, F. Mukai and H. Mannen. 2006. Mitochondrial DNA variation and genetic relationships in Japanese and Korean cattle. Asian-Aust. J. Anim. Sci. 19:1394-1398. https://doi.org/10.5713/ajas.2006.1394
- Thompson, J. D., D. G. Higgins, T. J. Gibson and W. Clustal. 1994. Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680. https://doi.org/10.1093/nar/22.22.4673
- Wang, X., H. Chen and C. Z. Lei. 2007. Genetic diversity and phylogenetic analysis of the mtDNA D-loop region in Tibetan sheep. Asian-Aust. J. Anim. Sci. 20:313-315. https://doi.org/10.5713/ajas.2007.313
- Wayne, D., H. Willem, S. Ferguson and B. Paulette. 2002. Characterization and evolution of the mitochondrial DNA control region in hornbills (Bucerotiformes). J. Mol. Evol. 54:794-806. https://doi.org/10.1007/s00239-001-0083-0
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