References
- Agrawal GK, Jwa NS, Iwahashi Y, Yonekura M, Iwahashi H, Rakwal R (2006) Rejuvenating rice proteomics: facts, challenges and visions. Proteomics 6:5549-5576 https://doi.org/10.1002/pmic.200600233
- Agrawal GK, Rakwal R (2008) Plant Proteomics: Technologies, Strategies, and Applications (Eds. GK Agrawal and R Rakwal). John Wiley & Sons, Inc., Hoboken, NJ, USA
- Agrawal GK, Jwa NS, Rakwal R (2009) Rice proteomics: ending phase I and the beginning of phase II. Proteomics 9:935-963 https://doi.org/10.1002/pmic.200800594
- Agrawal GK, Rakwal R (2011) Rice proteomics: A move toward expanded proteome coverage to comparative and functional proteomics uncovers the mysteries of rice and plant biology. Proteomics 11:1630-1649 https://doi.org/10.1002/pmic.201000696
- Ahsan N, Lee DG, Lee SH, Kang KY, Bahk JD, Choi MS, Lee IJ, Renaut J, Lee BH (2007a) A comparative proteomic analysis of tomato leaves in response to waterlogging stress. Physiol Plant 131:555-570 https://doi.org/10.1111/j.1399-3054.2007.00980.x
- Ahsan N, Lee DG, Lee SH, Kang KY, Lee JJ, Kim PJ, Yoon HS, Kim JS, Lee BH (2007b) Excess copper induced physiological and proteomic changes in germinating rice seeds. Chemosphere 67:1182-1193 https://doi.org/10.1016/j.chemosphere.2006.10.075
- Ahsan N, Lee DG, Lee SH, Lee KW, Bahk JD, Lee BH (2007c) A proteomic screen and identification of waterlogging-regulated proteins in tomato roots. Plant and Soil 295:37-51 https://doi.org/10.1007/s11104-007-9258-9
- Ahsan N, Lee SH, Lee DG, Lee H, Lee SW, Bahk JD, Lee BH (2007d) Physiological and protein profiles alternation of germinating rice seedlings exposed to acute cadmium toxicity. C R Biol 330:735-746 https://doi.org/10.1016/j.crvi.2007.08.001
- Ahsan N, Lee DG, Alam I, Kim PJ, Lee JJ, Ahn YO, Kwak SS, Lee IJ, Bahk JD, Kang KY, Renaut J, Komatsu S, Lee BH (2008a) Comparative proteomic study of arsenic-induced differentially expressed proteins in rice roots reveals glutathione plays a central role during As stress. Proteomics 8:3561-3576 https://doi.org/10.1002/pmic.200701189
- Ahsan N, Lee DG, Lee KW, Alam I, Lee SH, Bahk JD, Lee BH (2008b) Glyphosate-induced oxidative stress in rice leaves revealed by proteomic approach. Plant Physiol Biochem 46:1062-1070 https://doi.org/10.1016/j.plaphy.2008.07.002
- Ahsan N, Lee DG, Kim KH, Alam I, Lee SH, Lee KW, Lee H, Lee BH (2010) Analysis of arsenic stress-induced differentially expressed proteins in rice leaves by two-dimensional gel electrophoresis coupled with mass spectrometry. Chemosphere 78:224-231 https://doi.org/10.1016/j.chemosphere.2009.11.004
- Alam I, Lee DG, Kim KH, Park CH, Sharmin SA, Lee HS, Oh KW, Yun BW, Lee BH (2010a) Proteome analysis of soybean roots under waterlogging stress at an early vegetative stage. J Biosci 35:49-62 https://doi.org/10.1007/s12038-010-0007-5
- Alam I, Sharmin SA, Kim KH, Yang JK, Choi MS, Lee BH (2010b) Proteome analysis of soybean roots subjected to short-term drought stress. Plant and Soil 333:491-505 https://doi.org/10.1007/s11104-010-0365-7
- Canovas FM, Dumas-Gaudot E, Recorbet G, Jorrin J, Mock H, Rossignol M (2004) Plant proteome analysis. Proteomics 4:285-298 https://doi.org/10.1002/pmic.200300602
- Cho SK, Chung HS, Ryu MY, Park MJ, Lee MM, Bahk YY, Kim J, Pai HS , Kim WT (2006) Heterologous expression and molecular and cellular characterization of CaPUB1 encoding a hot pepper U-Box E3 ubiquitin ligase homolog. Plant Physiol 142:1664-1682 https://doi.org/10.1104/pp.106.087965
- Cho SH, Hoang QT, Kim YY, Shin HY, Ok SH, Bae JM, Shin JS (2006) Proteome analysis of gametophores identified a metallothionein involved in various abiotic stress responses in Physcomitrella patens. Plant Cell Reports 25:475-488 https://doi.org/10.1007/s00299-005-0079-0
- Chu SH, Noh H, Kim S, Kim KH, Hong SW, Lee H (2010) Enhanced drought tolerance in Arabidopsis via genetic manipulation aimed at the reduction of glucosamine-induced ROS generation. Plant Mol Biol 74:493-502 https://doi.org/10.1007/s11103-010-9691-7
- Heazlewood JL, Millar AH (2006) Plant Proteomics: Challenges and Resources. Annual Plant Reviews 28:1-31
- Hong SC, Hwang SW, Chang AC, Shin PG, Jang BC, Lee CW (2006) Effect of elevated ultraviolet-B radiation on yield and differential expression of proteome in Perilla (Perilla frutescens L). Korean J of Environ. Agric 25:7-13 https://doi.org/10.5338/KJEA.2006.25.1.007
- Jorrin JV, Maldonado AM, Castillejo MA (2007) Plant proteome analysis: A 2006 update Proteomics 7:2947-2962 https://doi.org/10.1002/pmic.200700135
- Jorrin-Novo JV, Maldonado AM, Echevarría-Zomeño S, Valledor L, Castillejo MA, Curtoa M, Valeroa J, Sghaiera B, Donosoa G, Redondoa I (2009) Plant proteomics update (2007-2008): Second-generation proteomic techniques, an appropriate experimental design, and data analysis to fulfill MIAPE standards, increase plant proteome coverage and expand biological knowledge. Journal of Proteomics 72:285-314 https://doi.org/10.1016/j.jprot.2009.01.026
- Jung YH, Lee JH, Agrawal GK, Rakwal R, Kim JA, Shim JK, Lee SK, Jeon JS, Koh HJ, Lee YH, Iwahashi H, Jwa NS (2005) The rice (Oryza sativa) Blast Lesion Mimic Mutant, blm, may confer resistance to blast pathogens by triggering multiple defense-associated signaling pathways. Plant Physiol Biochem 43:397-406 https://doi.org/10.1016/j.plaphy.2005.03.002
- Jung YH, Rakwal R, Agrawal GK, Shibato J, Kim JA, Lee MO, Choi PK, Jung SH, Kim SH, Koh HJ, Yonekura M, Iwahashi H, Jwa NS (2006) Differential expression of defense/ stress-related marker proteins in leaves of a unique rice blast lesion mimic mutant (BLM). J Proteome Res 5:2586-2598 https://doi.org/10.1021/pr060092c
- Kamal AHM, Kim KH, Shin KH, Choi JS, Baik BK, Tsujimoto H, Heo HY, Park CS, Woo SH (2010a) Abiotic stress responsive proteins of wheat grain determined using proteomics technique Aust. J Crop Sci 4:196-208
- Kamal AHM, Kim KH, Shin KH, Kim DE, Oh MW, Choi JS, Hirano H, Heo HY, Woo SH (2010b) Proteomics-based dissection of biotic stress responsive proteins in bread wheat (Triticum aestivum L.) Afr J Biotechnol 9:7239-7255
- Kim DS, Cho DS, Park WM, Na HJ, Nam HG (2006) Proteomic pattern-based analyses of light responses in Arabidopsis thaliana wild-type and photoreceptor mutants. Proteomics 6:3040-3049 https://doi.org/10.1002/pmic.200500670
- Kim HB, Lee H, Oh CJ, Lee HY, Eum HL, Kim HS, Hong YP, Lee Y, Choe S, An CS, Choi SB (2010) Postembryonic seedling lethality in the sterol-deficient Arabidopsis cyp51A2 mutant is partially mediated by the composite action of ethylene and reactive oxygen species. Plant Physiol 152:192-205 https://doi.org/10.1104/pp.109.149088
- Kim JY, Park SJ, Jang B, Jung CH, Ahn SJ, Goh CH, Cho K, Han O, Kang H (2007) Functional characterization of a glycinerich RNA-binding protein 2 in Arabidopsis thaliana under abiotic stress conditions. Plant J 50:439-451 https://doi.org/10.1111/j.1365-313X.2007.03057.x
- Kim ST, Kang YH, Wang Y, Wu J, Park ZY, Rakwal R, Agrawal GK, Lee SY, Kang KY (2009) Secretome analysis of differentially induced proteins in rice suspension-cultured cells triggered by rice blast fungus and elicitor. Proteomics 9:1302-1313 https://doi.org/10.1002/pmic.200800589
- Kim YO, Pan SO, Jung CH, Kang H (2007) A zinc finger-containing glycine-rich RNA-binding protein, atRZ-1a, has a negative impact on seed germination and seedling growth of Arabidopsis thaliana under salt or drought stress conditions. Plant Cell Physiol 48:1170-1181 https://doi.org/10.1093/pcp/pcm087
- Kwon SJ, Kwon SI, Bae MS, Cho EJ, Park OK (2007) Role of the methionine sulfoxide reductase MsrB3 in cold acclimation in arabidopsis. Plant Cell Physiol 48:1713-1723 https://doi.org/10.1093/pcp/pcm143
- Kwon YS, Ryu CM, Lee S, Park HB, Han KS, Lee JH, Lee K, Chung WS, Jeong MJ, Kim HK, Bae DW (2010) Proteome analysis of Arabidopsis seedlings exposed to bacterial volatiles. Planta 232:1355-1370 https://doi.org/10.1007/s00425-010-1259-x
- Lee BJ, Kwon SJ, Kim SK, Kim KJ, Park CJ, Kim YJ, Park OK, Paek KH (2006) Functional study of hot pepper 26S proteasome subunit RPN7 induced by tobacco mosaic virus from nuclear proteome analysis. Biochem. Biophys. Res Comm 351: 405-411 https://doi.org/10.1016/j.bbrc.2006.10.071
- Lee DG, Ahsan N, Lee SH, Kang KY, Bahk JD, Lee IJ, Lee BH (2007a) A proteomic approach in analyzing heat-responsive proteins in rice leaves. Proteomics 7:3369-3383 https://doi.org/10.1002/pmic.200700266
- Lee DG, Ahsan N, Lee SH, Kang KY, Lee JJ, Lee BH (2007b) An approach to identify cold-induced low-abundant proteins in rice leaf. C R Biol 330:215-225 https://doi.org/10.1016/j.crvi.2007.01.001
- Lee DG, Ahsana N, Lee SH, Lee JJ, Bahk JD, Kang KY, Lee BH (2009) Chilling stress-induced proteomic changes in rice roots. J Plant Physiol 166:1-11 https://doi.org/10.1016/j.jplph.2008.02.001
- Lee K, Han KS, Kwon YS, Lee JH, Kim SH, Chung WS, Kim Y, Chun SS, Kim HK, Bae DW (2009) Identification of potential DREB2C targets in Arabidopsis thaliana plants overexpressing DREB2C using proteomic analysis. Mol Cells 28:383-388 https://doi.org/10.1007/s10059-009-0154-4
- Lee K, Bae DW, Kim SH, Han HJ, Liu X, Park HC, Lim CO, Lee SY, Chung WS (2010) Comparative proteomic analysis of the short-term responses of rice roots and leaves to cadmium. J Plant Physiol 167:161-168 https://doi.org/10.1016/j.jplph.2009.09.006
- Lee SH, Lee KW, Kim KH, Yun DJ, Kwak SS, Lee BH (2009) Characterization of transgenic Tall Fescue plants overexpressing NDP kinase gene in response to cold stress. J Kor Grassl Forage Sci 29:299-306 https://doi.org/10.5333/KGFS.2009.29.4.299
- Lee YW, Shim YS, Kim YH, Kim SM (2008) Interpretation of glufosinate reactive mechanism and proteome variation in rice (Oryza sativa). Kor J Weed Sci 28:101-110
- Oh IS, Park AR, Bae MS, Jae KS, Kim YS, Lee JE, Kang NY, Lee S, Cheong H, Park OK (2005) Secretome analysis reveals an Arabidopsis lipase involved in defense against Alternaria brassicicola. The Plant Cell 17:2832-2847 https://doi.org/10.1105/tpc.105.034819
- Pandey A, Mann M (2000) Proteomics to study genes and genomes. Nature 405:837-846 https://doi.org/10.1038/35015709
- Pandey DM, Wu RZ, Hahn EJ, Paek KY (2006) Drought effect on electrophoretic protein pattern of Anoectochilus formosanus. Scientia Horticulturae 107:205-209 https://doi.org/10.1016/j.scienta.2005.07.007
- Park MA, Seo JH, Park JS, Kwon M (2009) Proteomic identification of toxic volatile organic compound-responsive proteins in Arabidopsis thaliana. Plant Cell Reports 28: 1603-1614 https://doi.org/10.1007/s00299-009-0759-2
- Rim SO, Lee JH, Hwang SK, Suh SJ, Lee JM, Rhee IK, Kim JG (2006) Proteome analysis of waito-c rice seedlings treated with culture fluid of gibberellin-producing fungus, Fusarium proliferatum KGL0401. J Miscrobiol Biotechnol 16:1990-1994
- Rossignol M (2001) Analysis of the plant proteome. Curr Opin Biotechnol 12:131-134 https://doi.org/10.1016/S0958-1669(00)00186-5
- Plant proteome analysis: A 2004-2006 update
- Rossignol M, Peltier J, Mock HP, Matros A, Maldonado AM, Jorrín JV (2006) Plant proteome analysis: A 2004-2006 update. Proteomics 6:5529-5548 https://doi.org/10.1002/pmic.200600260
- Ryu HS, Song MY, Kim CY, Han M, Lee SK, Ryoo N, Cho JI, Hahn TR, Jeon JS (2009) Proteomic analysis of rice mutants susceptible to Magnaporthe oryzae. Plant Biotechnol Rep 3:167-174 https://doi.org/10.1007/s11816-009-0087-6
- Shin PG, Chang AC, Hong SC, Lee KS, Lee KH, Lee YB (2008) Changes of rice storage proteins affected by dry and storage temperature. Korean J of Environ Agric 27:456-459 https://doi.org/10.5338/KJEA.2008.27.4.456
- Sixue C, Harmon AC (2006) Advances in plant proteomics. Proteomics 6:5504-5516 https://doi.org/10.1002/pmic.200600143
- Vítamvas P, Kosova K, Prasil IT (2007) Proteome analysis in plant stress research. Czech J Genet Plant Breed 43:1-6
Cited by
- Crop proteomics: Practical method for high resolution of two-dimensional electrophoresis vol.39, pp.1, 2012, https://doi.org/10.5010/JPB.2012.39.1.081