Genomics & Informatics

  • 제8권2호
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  • Pages.94-96
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  • 2010
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  • 1598-866X(pISSN)
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  • 2234-0742(eISSN)
한국유전체학회 (Korea Genome Organization)
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Java DOM Parsers to Convert KGML into SBML and BioPAX Common Exchange Formats

  • Lee, Kyung-Eun (Department of Computer Science, Ewha Womans University) ;
  • Jang, Myung-Ha (Department of Computer Science, Ewha Womans University) ;
  • Rhie, A-Rang (Department of Computer Science, Ewha Womans University) ;
  • Thong, Chin Ting (Department of Computer Science, Ewha Womans University) ;
  • Yang, San-Duk (Department of Computer Science, Ewha Womans University) ;
  • Park, Hyun-Seok (Department of Computer Science, Ewha Womans University)
  • 심사 : 2010.06.02
  • 발행 : 2010.06.30
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초록

Integrating various pathway data collections to create new biological knowledge is a challenge, for which novel computational tools play a key role. For this purpose, we developed the Java-based conversion modules KGML2SBML and KGML2BioPAX to translate KGML (KEGG Markup Language) into a couple of common data exchange formats: SBML (Systems Biology Markup Language) and BioPAX (Biological Pathway Exchange). We hope that our work will be beneficial for other Java developers when they extend their bioinformatics system into SBML- or BioPAX-aware analysis tools. This is part of our ongoing effort to develop an ultimate KEGG-based pathway enrichment analysis system.

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참고문헌

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