References
- Alfreider, A., J. Pernthhaler, R. Amann, B. Sattler, F. O. GlOckner, A. Wille, and R. Psenner. 1996. Community analysis of the bacterial assemblages in the winter cover and pelagic layers of high mountain lake by in situ hybridization. Appl. Environ. Microbiol. 62: 2138-2144.
- Amann, R. I., W. Ludwig, and K. H. Schleifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59: 143-169.
- Buchan, A., J. M. Gonzalez, and M. A. Moran. 2005. Overview of the marine Roseobacter lineage. Appl. Environ. Microbiol. 71: 5665-5677. https://doi.org/10.1128/AEM.71.10.5665-5677.2005
- Burns, A., M. Roche, and L. Berthe-Corti. 2001. Muricauda ruestringensis gen. nov., sp. nov., a facultatively anaerobic, appendaged bacterium from German North sea intertidal sediment. Int. J. Syst. Evol. Microbiol. 51: 1997-2006. https://doi.org/10.1099/00207713-51-6-1997
-
Campbell, B. J., A. S. Engel, M. L. Porter, and K. Takai. 2006. The versatile
$\varepsilon$ -proteobacteria: key players in sulphidic habitats. Nat. Rev. Microbiol. 4: 458-468. https://doi.org/10.1038/nrmicro1414 - Cho B. C. and F. Azan. 1988. Major role of bacteria in biogeochemical fluxes in the ocean's interior. Nature 332: 441-443. https://doi.org/10.1038/332441a0
- Cottrell, M. T. and D. L. Kirchman. 2000. Community composition of marine bacterioplankton determined by 16S rRNA gene clone libraries and fluorescence in situ hybridization. Appl. Environ, Microbiol. 66: 5116-5122. https://doi.org/10.1128/AEM.66.12.5116-5122.2000
- Cottrell, M. T. and D. L. Kirchman. 2000. Natural assemblages of marine proteobacteria and members Cytophaga- Flavobacter cluster consuming low- and high-molecularweight dissolved organic matter. Appl. Environ. Microbiol. 66: 1692-1697. https://doi.org/10.1128/AEM.66.4.1692-1697.2000
- Ducklow H. W., A. P. Duncan, P. J. L. Williams, and M. D. John. 1986. Bacterioplankton: a sink for carbon in a coastal marine plankton community, Science 232: 865-867. https://doi.org/10.1126/science.232.4752.865
- Eilers, H., J. Pernthaler, F. O. GlÖckner, and R. Aman. 2000. Culturability and in situ abundance of pelagic bacteria from the North Sea. Appl. Environ, Microbiol. 66: 3044-3051. https://doi.org/10.1128/AEM.66.7.3044-3051.2000
- Fabiano, L. Thompson, I. Tetsuya, and S. Jean. 2004. Biodiversity of Vibrios. Microbiol. Mol. Biol. Rev. 68: 403-431. https://doi.org/10.1128/MMBR.68.3.403-431.2004
- Felsenstein, J. 1985. Confidence limits on phylogenesis: an approach using the bootstrap. Evolution 39: 783-791. https://doi.org/10.2307/2408678
- GlOckner, F. O., B. M. Fuchs, and R. Aman. 1999. Bacterioplankton compositions of lakesand oceans: a first comparison based on fluorescence- in situ-hybridization. Appl. Environ. Microbiol. 65: 3721-3726.
-
Gonzalez, J. M., and M. A. Moran. 1997. Numerical dominance of a group of marine bacteria in the
$\alpha$ -subclass of the class Proteobacteria in coastal seawater. Appl. Environ. Microbiol. 63: 4237-4242. - Gonzalez, J. M., W. B. Whitman, R. E. Hodson, and M. A. Moran. 1996. Identifying numerically abundant culturable bacteria from complex communities: an example from a lignin enrichment culture. Apple. Environ. Microbiol. 62: 4433-4440.
- Gong, Y. and S. J. Son. 1982. A study of oceanic thermal fronts in the Southern Japan Sea. Bull. Fish. Res. Dev. Agency 28: 25-54.
- Holmes, B. 1991. The genera Flavobacterium, Sphingobacterium, and Weeksella, In A. Balows, H. G. Truper, M. Dworkin, W. Harder, and K.-H. Schleifer (eds.). The prokaryotes. Springer-Verlag, Berlin, Germany. pp. 3620-3630.
- Ivanova, E. P., T. Sawabe, N. M. Gorshkova, V. I. Svetashev, V. V. Mikhailov, D. V. Nicolau, and R. Christen. 2001. Shewanella japonica sp. nov. Int. J. Syst. Evol. Microbiol. 51: 1027-1033. https://doi.org/10.1099/00207713-51-3-1027
- Ivanova, E. P., T. Sawabe, N. V. Zhukova, N. M. Gorshkova, O. I. Nedashkovskaya, K. Hayashi, G. M. Frolova, A. F. Sergeev, K. G. Pavel, V. V. Mikhailov, and D. V. Nicolau. 2003. Occurrence and diversity of mesophilic Shewanella strains isolated from the North-West Pacific Ocean. Syst. Appl. Microbiol. 26: 293-301. https://doi.org/10.1078/072320203322346155
- Jeon, S. A., H. R. Sung, Y. M. Park, J. H. Park, and S.- Y. Ghim. 2009. Analysis of endospore-forming bacteria or nitrogen-fixing bacteria community isolated from plants rhizosphere in Dokdo island. Kor. J. Microbiol. Biotechnol. 37: 189-196.
- Jukes, T. H. and C. R. Cantor. 1969. Evolution of protein molecules. In Mammalian protein metabolism, (Munro, H. N. eds.) pp. 21-132. New York, Academic Press, USA.
- Kang H. and D. S. Kang. 2002. Contribution of marine microbes to particulate organic matter in the Korea Strait. J. Kor. Soc. Oceanogr. 1: 35-44.
- Kim, B. S., H. M. Oh, H. J. Kang, S. S. Park, and J. S. Chun. 2004. Remarkable bacterial diversity in the tidal flat sediment as revealed by 16S rDNA analysis. J. Microbiol. Biotechnol. 14: 205-211.
- Lee, D. S., Y. S. Kim, S. Y. Jeong, C. K. Kang, and W. J. Lee. 2008. Environmental characteristics and distributions of marine bacteria in the surface sediments of Kamak Bay in winter and summer. J. Environ. Sciences 17: 755-765. https://doi.org/10.5322/JES.2008.17.7.755
- Lee, J. B., M. S. Han and H. S. Yang. 1998. The ecosystem of the southern coastal waters of the East Sea, Korea 1. Phytoplankton community structure and primary productivity in September, 1994. J. Korean Fish . Soc. 31: 45-55.
- Lee, J. H., H. H. Shin, D. S. Lee, K. K. Kwon, S. J. Kim, and H. K. Lim. 1999. Bacterial diversity of cultivable isolates from sea water and a marine coral, Plexauridae sp. near Mun-Sum, Cheju-Island. J. Microbiol. 37: 193-199.
- Maidak, B. L., J. R. Cole, T. G. Parker, CT Jr., P. R. Saxman, J. M. Stredwick, G. M. Garrity, B. Li, G. H. Olsen, S. Paranik, T. M. Schmidt, and J. M. Tiedje. 2000. The RDP (Ribosomal Database project) continues. Nucleic acids Res. 28: 173-174. https://doi.org/10.1093/nar/28.1.173
- McClung, C. R., D. G. Patriquin, and R. E. Davis. 1983. Campylobacter nitrofigilis sp. nov., a nitrogen-fixing bacterium associated with roots of Spartina alternijlora Loisel. Int. J. Syst. Bacteriol. 33: 605-612. https://doi.org/10.1099/00207713-33-3-605
- MEthe, B. A., W. D. Hiorns, and J. P. Zehr. 1998. Contrasts between marine and freshwater bacterial community composition: analyses of communities in Lake George and six other Adirondack lakes. Limnol. Oceanogr. 43: 368-374. https://doi.org/10.4319/lo.1998.43.2.0368
- Olsen, G. J., D. J. Lane, S. J. Giovannoni, and N. R. Pace. 1986. Microbial ecology and evolution: a ribosomal RNA approach. Ann. Rev. Microbiol. 40: 337-365. https://doi.org/10.1146/annurev.mi.40.100186.002005
- Pernthaler, J., F. O. GlOckner, S. Unterholzner, A. Alfreider, R. Psenner, and R. Amann. 1998. Seasonal community and population dynamics of pelagic bacteria and archaea in a high mountain lake. Appl. Environ, Microbiol. 64: 4299-4306.
- Prado, S., J. Montes, J. L. Romalde, and J. L. Barja. 2009. Inhibitory activity of Phaeobacter strains against aquaculture pathogenic bacteria. Int. Microbiol. 12: 107-114.
- Saitou, N. and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
- Vandamme, P., E . Falsen, R. Rossau, B. Hoste, P. Segers, R. Tytgat, J. De Ley. 1991. Revision of Campylobacter, Helicobacter, and Wolinella taxonomy: emendation of generic descriptions and proposal of Arcobacter gen. nov. Int. J. Syst. Evol. Microbiol. 41: 88-103.
- Wagner-Dobler, I. and H. Biebl. 2006. Environmental biology of the marine Roseobacter lineage. Annu. Rev. Microbiol. 60: 255-280. https://doi.org/10.1146/annurev.micro.60.080805.142115
- Wang J, X. Jiang, X. Mou, and H. Guan, 2004. Antioxidation of agar oligosaccharides produced by agarase from a marine bacterium. J. Appl. Phycol. 16: 333-340.
- Wimpenny, J. W., W. L. T. Robert, and C. Philip. 1983. Laboratory model systems for the investigation of spatially and temporally organized microbial ecosystems. In microbes in their natural environments. Cambridge Univ. Press. pp. 67-117.
- Woo., P. C. Y., S. K. P. Lau, J. L. L . Teng, H. Tse, and K. Y. Yuen. 2008 Then and now : use of 16S rDNA gene sequencing for bacterial identification and discovery of novel bacteria in clinical microbiology laboratories. C.M.I. 14: 908-934.
- Yoon, J. H., S. T. Lee, and Y. H. Park. 1998. Inter- and intraspecific phylogenetic analysis of the genus Norcardioides and related taxa based on 16s rRNA gene sequences. Int. J. Syst. Bacteriol. 48: 187-194. https://doi.org/10.1099/00207713-48-1-187
- Yoon, J. H., K. H. Kang, S. Y. Lee, C. H. Lee and T. K. Oh. 2005. Maribacter dokdonensis sp. nov., isolated from sea water off a Korean island, Dokdo. Int. J. Syst. Evol. Microbiol. 54: 487-491.
- Yoon, J. H., S. J. Kang, S. Y. Lee, M. H. Lee, and T. K. Oh. 2005. Virgibacillus dokdonensis sp. nov., isolated from a Korean island, Dokdo, located at the edge of the East Sea in Korea. Int. J. Syst. Evol. Microbiol. 51: 1079-1086.
- Yoon, J. H., S. J. Kang, and T. K. Oh. 2006. Polaribacter dokdonensis sp. nov., isolated from seawater. Int. J. Syst. Evol. Microbiol. 56: 1251-1255. https://doi.org/10.1099/ijs.0.63820-0