References
- Ahn, S., S. Congeevaram, Y. K. Choung, and J. Park. 2008. Enhanced phenol removal by floating fungal populations in a high concentration phenol-fed membrane bioreactor. Desalination 221: 494-501. https://doi.org/10.1016/j.desal.2007.01.110
- Andreote, F. D., J. L. Azevedo, and W. L. Araujo. 2009. Assessing the diversity of bacterial communities associated with plants. Braz. J. Microbiol. (In Press).
- Arai, H., S. Akahira, T. Ohishi, M. Maeda, and T. Kudo. 1998. Adaptation of Comamonas testosteroni TA441 to utilize phenol: Organization and regulation of the genes involved in phenol degradation. Microbiology 144: 2895-2903. https://doi.org/10.1099/00221287-144-10-2895
- Atlas, R. M. and R. Bartha. 1998. Microbial Ecology: Fundamentals and Applications, pp. 329-477, 4th Ed. Beijaming/Cumming Science Publishing Company, Inc., Menlo Park, CA.
- Bae, H. S., J. M. Lee, Y. B. Kim, and S. T. Lee. 1996. Biodegradation of the mixtures of 4-chlorophenol and phenol by Comamonas testosteroni CPW301. Biodegradation 7: 463-469.
- Barrios-Martinez, A., E. Barbot, B. Marrot, P. Moulin, and N. Roche. 2006. Degradation of synthetic phenol-containing wastewaters by MBR. J. Membrane Sci. 281: 288-296. https://doi.org/10.1016/j.memsci.2006.03.048
- Basile, L. A. and L. Erijman. 2008. Quantitative assessment of phenol hydroxylase diversity in bioreactors using a functional gene analysis. Appl. Microbiol. Biotechnol. 78: 863-872. https://doi.org/10.1007/s00253-008-1351-3
- Contreras, E. M., M. E. Albertario, N. C Bertola, and N. E. Zaritzky. 2008. Modelling phenol biodegradation by sludges evaluated through respirometric techniques. J. Hazard. Mater. 150: 366-374.
- Dibenedetto, A., R. M. Lo Noce, M. Narracci, and M. Aresta. 2006. Structure-biodegradation correlation of polyphenols for Thauera aromatica in anaerobic conditions. Chem. Ecol. 22: 133-143. https://doi.org/10.1080/02757540600557975
- Duineveld, B. M., G. A. Kowalchuk, A. Keijzer, J. D. van Elsas, and J. A. van Veen. 2001. Analysis of bacterial communities in the rhizosphere of chrysanthemum via denaturing gradient gel electrophoresis of PCR-amplified 16S rRNA as well as DNA fragments coding for 16S rRNA. Appl. Environ. Microbiol. 67: 172-178. https://doi.org/10.1128/AEM.67.1.172-178.2001
- Ewing, B., L. Hillier, M. Wendl, and P. Green. 1998. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 8: 175-185.
- Godon, J. J., E. Zumstein, P. Dabert, F. Habouzit, and R. Moletta. 1997. Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis. Appl. Environ. Microbiol. 63: 2802-2813.
- Heuer, H., M. Krsek, P. Baker, K. Smalla, and E. M. Wellington. 1997. Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients. Appl. Environ. Microbiol. 63: 3233-3241.
- Heylen, K., B. Vanparys, L. Wittebolle, N. Verstraete, N. Boon, and P. de Vos. 2006. Cultivation of denitrifying bacterium: Optimization of isolation conditions and diversity study. Appl. Environ. Microbiol. 72: 2637-2643. https://doi.org/10.1128/AEM.72.4.2637-2643.2006
- Ibekwe, A. M. and S. R. Lyon. 2007. Microbial characteristics through drinking water aquifer sand material. Eng. Life Sci. 1: 81-89.
- Jiang, H. J., J. H. Tay, A. M. Maszenan, and S. T. L. Tay. 2004. Bacterial diversity and function of aerobic granules engineered in a sequencing batch reactor for phenol degradation. Appl. Environ. Microbiol. 70: 6767-6775. https://doi.org/10.1128/AEM.70.11.6767-6775.2004
- Khan, S. T. and A. Hiraishi. 2002. Diaphorobacter nitroreducens gen. nov., sp. nov., a poly(3-hydroxybutyrate) degrading denitrifying bacterium isolated from sludge. J. Gen. Appl. Microbiol. 48: 299-308. https://doi.org/10.2323/jgam.48.299
- Khardenavis, A. A., A. Kapley, and H. J. Purohit. 2007. Simultaneous nitrification and denitrification by diverse Diaphorobacter sp. Appl. Microbiol. Biotechnol. 77: 403-409. https://doi.org/10.1007/s00253-007-1176-5
- Kimura, M. 1980. A simple model for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16: 111-120. https://doi.org/10.1007/BF01731581
- Lane, D. L., B. Pace, G. J. Olsen, D. A. Stahl, M. L. Sogin, and N. R. Pace. 1985. Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses. Prog. Nat. Sci. 82: 6955-6959. https://doi.org/10.1073/pnas.82.20.6955
- Lin, C.-W., C.-Y. Lai, L.-H. Chen, and W.-F. Chiang. 2007. Microbial community structure during oxygen-stimulated bioremediation in phenol-contaminated groundwater. J. Hazard. Mater. 140: 221-229. https://doi.org/10.1016/j.jhazmat.2006.06.083
- Loffler, F. E. and E. A. Edwards. 2006. Harnessing microbial activities for environmental cleanup. Curr. Opin. Microbiol. 17: 274-284.
- Manefield, M., A. S. Whiteley, G. I. Griffiths, and M. J. Bailey. 2002. RNA stable isotope probing, a novel means of linking microbial community function to phylogeny. Appl. Environ. Microbiol. 68: 5367-5373. https://doi.org/10.1128/AEM.68.11.5367-5373.2002
- Mao, Y., X. Zhang, X. Yan, B. Liu, and L. Zhao. 2008. Development of group-specific PCR-DGGE fingerprinting for monitoring structural changes of Thauera spp. in an industrial wastewater treatment plant responding to operational perturbations. J. Microbiol. Meth. 75: 231-236. https://doi.org/10.1016/j.mimet.2008.06.005
- Park, J. Y. and B. Sang. 2007. Change of sludge consortium in response to sequential adaptation to benzene, toluene, and oxylene. J. Microbiol. Biotechnol. 17: 1772-1781.
- Pearson, K. 1926. On the coefficient of racial likeliness. Biometrika. 18: 105-117.
- Saitou, N. and M. Nei. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
- Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular Cloning: A Laboratory Manual, 2nd Ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, U.S.A.
- Shinoda, Y., Y. Sakai, H. Uenishi, Y. Uchihashi, A. Hiraishi, H. Yukawa, H. Yurimoto, and N. Kato. 2004. Aerobic and anaerobic toluene degradation by a newly isolated denitrifying bacterium, Thauera sp. strain DNT-1. Appl. Environ. Microbiol. 70: 1385-1392. https://doi.org/10.1128/AEM.70.3.1385-1392.2004
- Song, B., N. J. Palleroni, and M. M. Haggblom. 2000. Isolation and characterization of diverse halobenzoate-degrading denitrifying bacteria from soils and sediments. Appl. Environ. Microbiol. 66: 3446-3453. https://doi.org/10.1128/AEM.66.8.3446-3453.2000
- Standard Methods for the Examination of Water and Wastewater. 1998. American Public Health Association, American Water Works association and Water Pollution Control Federation, 20th edition, Washington, DC.
- Streit, W. R. and R. A. Schmitz. 2004. Metagenomics - The key to the uncultured microbes. Curr. Opin. Microbiol. 7: 492-498. https://doi.org/10.1016/j.mib.2004.08.002
- Sueoka, K., H. Satoh, M. Onuki, and T. Mino. 2009. Microorganisms involved in anaerobic phenol degradation in the treatment of synthetic coke-oven wastewater detected by RNA stable-isotope probing. FEMS Microbiol. Lett. 291: 169-174. https://doi.org/10.1111/j.1574-6968.2008.01448.x
- Tamura, K., J. Dudley, M. Nei, and S. Kumar. 2007. MEGA 4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24: 1596-1599. https://doi.org/10.1093/molbev/msm092
- ter Braak, C. J. F. and P. Smilauer. 2002. CANOCO Reference Manual and CanoDraw for Windows User's Guide: Software for Canonical Community Ordination (version 4.5).
- Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The ClustalX Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24: 4876-4882.
-
Valle, A., M. J. Bailey, A. S. Whiteley, and M. Manefield. 2004. N-Acyl-
$_L$ -homoserine lactones (AHLs) affect microbial community composition and function in sludge. Environ. Microbiol. 6: 424-433. https://doi.org/10.1111/j.1462-2920.2004.00581.x - Viero, A. F., T. M. Melo, A. P. R. Torres, N. R. Ferreira, G. L. Sant'Anna Jr., C. P. Borges, and V. M. J. Santiago. 2008. The effects of long-term feeding of high organic loading in a submerged membrane bioreactor treating oil refinery wastewater. J. Membrane Sci. 319: 223-230. https://doi.org/10.1016/j.memsci.2008.03.038
- Wei, G., J. Yu, Y. Zhu, W. Chen, and L. Wang. 2008. Characterization of phenol degradation by Rhizobium sp. CCNWTB 701 isolated from Astragalus chrysopteru in mining tailing region. J. Hazard. Mater. 151: 111-117. https://doi.org/10.1016/j.jhazmat.2007.05.058
- White, D. 2000. The Physiology and Biochemistry of Prokaryotes, 2nd Ed. Oxford University Press., Oxford, NY.
- Yan, J., W. Jianping, B. Jing, W. Daoquan, and H. Zongding. 2006. Phenol biodegradation by the yeast Candida tropicalis in the presence of m-cresol. Biochem. Eng. J. 29: 227-234. https://doi.org/10.1016/j.bej.2005.12.002
- Zhao, W.-T., X. Huang, D.-J. Lee, X.-H. Wang, and Y.-X. Shen. 2009. Use of submerged anaerobic-anoxic-oxic membrane bioreactor to treat highly toxic coke wastewater with complete sludge retention. J. Membrane Sci. 330: 57-64. https://doi.org/10.1016/j.memsci.2008.12.072
Cited by
- Screening for hydrocarbon biodegraders in a metagenomic clone library derived from Brazilian petroleum reservoirs vol.41, pp.7, 2010, https://doi.org/10.1016/j.orggeochem.2010.03.014
- Functional genes based analysis of sulfur-oxidizing bacteria community in sulfide removing bioreactor vol.90, pp.2, 2011, https://doi.org/10.1007/s00253-010-3061-x
- Membrane Bioreactors for Industrial Wastewater Treatment: A Critical Review vol.42, pp.7, 2010, https://doi.org/10.1080/10643389.2010.526494
- Analysis of Bacterial Communities in A2O Membrane Bioreactor Treating Oily Wastewater vol.641, pp.None, 2013, https://doi.org/10.4028/www.scientific.net/amr.641-642.87
- Investigation of the FeFe-hydrogenase gene diversity combined with phylogenetic microbial community analysis of an anaerobic domestic sewage sludge vol.29, pp.11, 2010, https://doi.org/10.1007/s11274-013-1363-8
- Meta-omics approaches to understand and improve wastewater treatment systems vol.14, pp.3, 2010, https://doi.org/10.1007/s11157-015-9370-x
- Recent developments in forward osmosis membrane bioreactors: a comprehensive review vol.57, pp.59, 2010, https://doi.org/10.1080/19443994.2016.1193448
- Membrane fouling behavior and microbial community succession in a submerged membrane bioreactor treating harbor oily wastewater vol.17, pp.9, 2010, https://doi.org/10.1631/jzus.a1500289
- Performance and Bacterial Communities in Conventional Activated Sludge and Membrane Bioreactor Systems with Low C/N Ratio Wastewater for Nitrogen Removal vol.36, pp.9, 2019, https://doi.org/10.1089/ees.2019.0007
- Revealing the bacterial community profiles during the degradation of acetone, propionic and hexanoic acids-components of wastewater from the Fischer-Tropsch process vol.23, pp.2, 2020, https://doi.org/10.1007/s10123-019-00106-z
- Comparison of methods for preservation of activated sludge samples for high-throughput nucleic acid sequencing and bacterial diversity analysis vol.157, pp.None, 2021, https://doi.org/10.1016/j.ibiod.2020.105139
- Characterization of the biofilm structure and microbial diversity of sulfate-reducing bacteria from petroleum produced water supplemented by different carbon sources vol.304, pp.None, 2010, https://doi.org/10.1016/j.jenvman.2021.114189