참고문헌
- Auweter, S.D., Oberstrass, F.C., and Allain, F.H.-T. (2006). Sequence-specific binding of single-stranded RNA: is there a code for recognition? Nucleic Acids Res. 34, 4943-4959 https://doi.org/10.1093/nar/gkl620
- Berget, S.M. (1995). Exon recognition in vertebrate splicing. J. Biol. Chem. 270, 2411-2414 https://doi.org/10.1074/jbc.270.6.2411
- Beyer, A.L., and Osheim, Y.N. (1990). Ultrastructural analysis of the ribonucleoprotein substrate for pre-mRNA processing. In The Eukaryotic Nucleus; Molecular Biochemistry and Macromolecular Assemblies, Vol. 2, P.R. Strauss, and S.H. Wilson, eds. (The Telford Press, Chapter 18), pp. 431-451
- Branlant, C., Krol, A., Ebel, J.-P., Lazar, E., Gallinaro, H., Jacob, M., Sri-Widada, J., and Jeanteur, P. (1980). Nucleotide sequences of nuclear U1A RNAs from chicken, rat and man. Nucleic Acids. Res. 8, 4143-4154 https://doi.org/10.1093/nar/8.18.4143
- Brow, D.A. (2002). Allosteric cascade of spliceosome activation. Annu. Rev. Genet. 36, 333-360 https://doi.org/10.1146/annurev.genet.36.043002.091635
- Buratti, E., and Baralle, F.E. (2004). Influence of RNA Secondary Structure on the Pre-mRNA Splicing Process. Mol. Cell. Biol. 24, 10505-10514 https://doi.org/10.1128/MCB.24.24.10505-10514.2004
- Cartegni, L., Wang, J., Zhu, Z., Zhang, M.Q., and Krainer, A.R. (2003). http://rulai.cshl.edu/tools/ESE
- Catterall, J.F., Stein, J.P., Kristo, P., Means, A.R., and O'Malley, B.W. (1980). Primary sequence of ovomucoid messenger RNAas determined from cloned complementary DNA. J. Cell Biol. 87, 480-487 https://doi.org/10.1083/jcb.87.2.480
- Draper, D.E. (1995). Protein-RNA recognition. Annu. Rev. Biochem.64, 593-620 https://doi.org/10.1146/annurev.bi.64.070195.003113
- Epstein, P., Reddy, R., Henning, D., and Busch, H. (1980). The nucleotide sequence of Nuclear U6 (4.7 S) RNA. J. Biol. Chem. 255, 8901-8906
- Freier, S., Kierzek, R., Jaeger, J.A., Sugimoto, N., Caruthers, M.H., Neilson, T., and Turner, D.H. (1986). Improved free-energy parameters for predictions of RNA duplex stability. Proc. Natl. Acad. Sci. USA 83, 9373-9377 https://doi.org/10.1073/pnas.83.24.9373
- Freund, M., Asang, C., Kammler, S., Konermann, C., Krummheuer, J., Hipp, M., Meyer, I., Gierling, W., Theiss, S., Preuss, T., et al. (2003). A novel approach to describe a U1 snRNA binding site. Nucleic Acids Res. 31, 6963-6975 https://doi.org/10.1093/nar/gkg901
- Freund, M., Hicks, M.J., Konermann, C., Otte, M., Hertel, K.J., and Schaal, H. (2005). Extended base pair complementarity between U1 snRNA and the 5′ splice site does not inhibit splicing in higher eukaryotes, but rather increases 5′ splicing site recognition. Nucleic Acids Res. 35, 5112-5119
- Gerlinger, P., Krust, A., LeMeur, M., Perrin, F., Cochet, M., Gannon, F., Dupret, D., and Chambon, P. (1982). Multiple initiation and polyadenylation sites for the chicken ovomucoid transcription unit. J. Mol. Biol. 162, 345-364 https://doi.org/10.1016/0022-2836(82)90531-9
- Goguel, V., Wang, Y., and Rosbash, M. (1993). Short artificial hairpins sequester splicing signals and inhibit yeast pre-mRNA splicing. Mol. Cell. Biol. 13, 6841-6848 https://doi.org/10.1128/MCB.13.11.6841
- Isaacs, N. (1995). Kinetics and thermodynamics. In the book 'Physical Organic Chemistry' Chapter 2, (England: Longman Scietific and Technical, Longman House, Burnt Mill, Harlow Essex CM20 2JE), pp. 87-128
-
Jamison, S.F., Pasman, Z., Wang, J., Will, C., L
$\ddot{u}$ hrmann, R., Manley, J.L., and Garcia-Blanco, M.A. (1995). U1 snRNP-ASF/SF2 interaction and 5′ splice site recognition: characterization of required elements. Nucleic Acids Res. 23, 3260-3267 https://doi.org/10.1093/nar/23.16.3260 - Kim, H.-J., and Han, K. (1995). Automated modeling of the RNA folding process. Mol. Cells 5, 406-412
- Korf, G.M., and Stumph, W.E. (1986). Chicken U2 and U1 RNA genes are found in very different genomic environment but have similar promoter structures. Biochemistry 25, 2041-2047 https://doi.org/10.1021/bi00356a031
- Lewin, B. (1994; 2008). RNA splicing and processing. Genes IX, Chapter 26, (Pearson Prentice Hall, Pearson Education, Inc.), pp. 667-705
- Liu, Z.-R. (2002). p68 RNA Helicase is an essential human splicing factor that acts at the U1 snRNA-5′ splice site duplex. Mol. Cell. Biol. 22, 5443-5450 https://doi.org/10.1128/MCB.22.15.5443-5450.2002
- Lund, M., and Kjems, J. (2002). Defining a 5′ splice site by functional selection in the presence and absence of U1 snRNA 5′ end. RNA 8, 166-179 https://doi.org/10.1017/S1355838202010786
- Madhani, H.D., and Guthrie, C. (1994). Dynamic RNA-RNA interactions in the spliceosome. Ann. Rev. Genet. 28, 1-26 https://doi.org/10.1146/annurev.ge.28.120194.000245
- Roca, X., Sachidanandam, R., and Krainer, A. (2005). Determinants of the inherent strength of human 5′ splice sites. RNA 11, 683-698 https://doi.org/10.1261/rna.2040605
- Ro-Choi, T.S. (1999). Nuclear snRNA and nuclear function (Discovery of 5′ cap structures in RNA). Crit. Rev. Eukaryot. Gene Expr. 9, 107-158 https://doi.org/10.1615/CritRevEukarGeneExpr.v9.i2.20
- Ro-Choi, T.S., and Choi, Y.C. (2003). Structural elements of dynamic RNA strings. Mol. Cells 16, 201-210
- Ro-Choi, T.S., and Choi, Y.C. (2007). A modeling study of cotranscriptional metabolism of hnRNP Using FMR1 gene. Mol. Cells 23, 228-238
- Ro-Choi, T.S., and Henning, D. (1977). Sequence of 5′ oligonucleotide of U1 RNA from Novikoff hepatoma cells. J. Biol. Chem. 252, 3814-3820
- Ro-Choi, T.S., Reddy, R., Choi, Y.C., Raj, N.B., and Henning, D. (1974). Primary sequence of U1 nuclear RNA and unusual feature of 5′ end structure of LMWN RNA. Fed. Proc. Fed. Am. Soc. Exp. Biol. 33, 1548
- Rossi, F., Forne, T., Antoine, E., Tazi, J., Brunel, C., and Cathala, G. (1996). Involvement of U1 small nuclear ribonucleoproteins (snRNP). in 5′ splice site-U1 snRNP interaction. J. Biol. Chem. 271, 23985-23991 https://doi.org/10.1074/jbc.271.39.23985
- Samarina, O.P., and Krichevskaya, A.A. (1981). Nuclear 30S RNP Particles. In the book 'The Cell Nucleus; Nuclear Particles' Part B., H. Busch, ed, (Academic Press, Inc.), pp. 1-48
- Schulz, G.E., and Schirmer, R.H. (1985). Protein-Ligand Interactions. Principles of Protein Structure, Chapter 10, (New York, Berlin, Heidelberg, Tokyo: Springer-Verlag)
- Seetharaman, M., Eldho, N.V., Padgett, R.A., and Dayie, K.T. (2008). Structure of a self-splicing group II intron catalytic effector domain 5: Parallels with spliceosomal U6 RNA. RNA 12, 235-247 https://doi.org/10.1261/rna.2237806
- Shahied-Milam, L., Soltaninassab, S.R., Iyer, G.V., and LeStourgeon, W.M. (1998). The heterogenous nuclear ribonucleoprotein C protein tetramer binds U1, U2, and U6 snRNAs through its high affinity RNA bindinf domain (the bZIP-like motif). J. Biol Chem. 273, 21359-21367 https://doi.org/10.1074/jbc.273.33.21359
- Skoglund, U., Andersson, K., Björkroth, B., Lamb, M.M., and Daneholt, B. (1983). Visualization of the formation and transport of a specific hnRNP particle. Cell 34, 847-855 https://doi.org/10.1016/0092-8674(83)90542-1
- Staley, J., and Guthrie, C. (1999). An RNA switch at the 5′ splice site requires ATP and the DEAD box protein Prp28p. Mol. Cell 3, 55-64 https://doi.org/10.1016/S1097-2765(00)80174-4
- Stein, J.P., Catterall, J.F., Kristo, P., Means, A.R., and O'Malley, B.W. (1980). Ovomucoid intervening sequences specify functional domains and generate protein polymorphism. Cell 21, 681-687 https://doi.org/10.1016/0092-8674(80)90431-6
- Toor, N., Keating, K.S., Taylor, S.D., and Pyle, A.M. (2008). Crystal structure of a self-spliced group II intron. Science 320, 77-82 https://doi.org/10.1126/science.1153803
- von Heijine, G. (1987). Sequence analysis in molecular biology, Chapter 4, Nucleotide sequences: what you can do with your sequence once you have it (Academic Press), pp. 19-80
- Xia, T., Mathews, D.H., and Turner, D.H. (2001). Thermodynamics of RNA secondary structure formation. In RNA, Chapter 2, D. Soll, S. Nishimura, and P.B. Moore, eds., pp. 21-48
피인용 문헌
- Chemical Approaches for Structure and Function of RNA in Postgenomic Era vol.2012, pp.None, 2009, https://doi.org/10.1155/2012/369058