Karyotyping Analysis and Bicolor FISH of Pimpinella hallaisanensis, an Endemic to Jeju Island

제주특산 한라참나물(Pimpinella hallaisanensis)의 핵형분석과 Bicolor FISH

  • Kim, Soo-Young (Korea Research Institute of Bioscience and Biotechnology) ;
  • Kim, Chan-Soo (Warm-Temperate Forest Research Center, Korea Forest Research Institute) ;
  • Tho, Jae-Hwa (Warm-Temperate Forest Research Center, Korea Forest Research Institute) ;
  • Lee, Joongku (Korea Research Institute of Bioscience and Biotechnology)
  • 김수영 (한국생명공학연구원) ;
  • 김찬수 (국립산림과학원 난대산림연구소) ;
  • 도재화 (국립산림과학원 난대산림연구소) ;
  • 이중구 (한국생명공학연구원)
  • Received : 2008.02.01
  • Accepted : 2008.03.24
  • Published : 2008.06.30

Abstract

Chromosome analysis using karyotyping and bicolor FISH were carried out in Pimpinella hallaisanensis which is one of the endemic plants in Jeju island of Korea. The somatic methaphase chromosomes number of this plant was 2n=2x=22 and the size of this chromosomes ranged from 3.58 to $5.82{\mu}m$. The chromosome complements consisted of two pairs of metacentrics (chromosomes 1 and 2), four pairs of submetacentrics (chromosomes 3, 4, 6 and 8) and five pairs of subtelocentrics (chromosomes 5, 7, 9, 10 and 11). Using bicolor FISH, three pairs of 5S and four pairs of 45S rDNA loci were observed. Two pairs of 5S rDNA signals were detected on the end of the long arm of chromosome 4 and one pair of them were observed between long arm end and centromere. Another 45S rDNA signals were detected on the end of short arm of chromosome 4, 6, 10 and 11, respectively. Hence, the chromosome number reexamined using both conventional staining and FISH methods was different from previous report.

제주도 특산식물인 한라참나물의 염색체수를 재조사하기 위해 핵형분석과 bicolor FISH를 수행하였다. 한라참나물의 체세포 염색체수는 2n=2x=22로 관찰되었고, 염색체의 길이는 $3.58-5.82{\mu}m$였다. 염색체의 구성은 2쌍의 중부 염색체(염색체 1과 2번), 4쌍의 차중부 염색체 (염색체 3, 4, 6, 8번), 그리고 5쌍의 차단부 염색체(염색체 5, 7, 9, 10, 11번)로 확인되었다. Bicolor FISH를 통해 3쌍의 5S와 4쌍의 45S rDNA 위치를 확인하였으며, 5S rDNA의 경우 염색체 4번의 장완 말단 부위에서 2쌍과 염색체 6번의 장완 중심과 동원체 사이에서 1쌍의 signals가 관찰되었다. 45S rDNA signals는 염색체 4, 6, 10 그리고 11번의 단완 말단에서 각각 확인되었다. 본 종의 염색체수가 핵형분석 및 FISH를 통해 이전의 연구결과와 다르게 분석됨으로써 한라참나물의 염색체수의 재고가 필요하다고 사료되었다.

Keywords

References

  1. Abebe, F. L. S. 1992. Systematic studies in the genus Pimpinella L. (Umbelliferae) from tropical Africa. Botanical J. Linn. Society 110: 327-372. https://doi.org/10.1111/j.1095-8339.1992.tb00298.x
  2. Castilho, A. and J. S. Heslop-Harrison. 1995. Physical mapping of 5S and 18S-25S rDNA and repetitive DNA sequences in Aegilops umbellulata. Genome 38: 91-96. https://doi.org/10.1139/g95-011
  3. Cauwet-marc, A. M., J. Carbonnier, M. Farille. 1980. Contribution a l'etude caryologique des Ombelliferes du Nepal. I. 35: 497-510.
  4. Daushkevich, J. V., T. V. Alexeeva and M. G. Pimenov. 1995. IOPB chromosome data 10. International Organization of Plant Biosystematists Newsletter 25L: 7-8.
  5. Flavell, R. B. 1986. The structure and control on expression of ribosomal RNA genes. Oxford Surveys Plant Mol. Cell Biol. 3: 251-274
  6. Fukui, K., N. Ohmido and G. S. Khush. 1994. Variability in rDNA loci in the genus Oryza detected through fluorescence in situ hybridization. Theor. Appl. Genet. 87: 893-899.
  7. Fransz, P. F., S. Amstrong, J. H. de Jong and L. D. Pamell. 2000. Integrated cytogenetic map of chromosome arm 4S of A. thaliana: structural organization of heterochromatic knob and centromere region. Cell 100: 367-376. https://doi.org/10.1016/S0092-8674(00)80672-8
  8. Hamel, I. A., A. Langer and A. K. Koul. 1986. Nucleolar organizing region in the Apiaceae (Umbelliferae). Plant Systematics and Evolution 154: 11-30. https://doi.org/10.1007/BF00984865
  9. Hore, A. 1980. Structure and behavior of chromosomes as an aid to the study of phylogeny of Umbelliferae with special reference to the tribe Apieae (Ammineae) and Saniculeae. Cytologia 45: 389-402. https://doi.org/10.1508/cytologia.45.389
  10. Jang, G. J., W. K. Jang and W. C. Lee. 1995. Pimpinella brachycarpa var. hallaisanensis (Apiaceae): A new variety from Korea. Korean J. Plant Tax. 25: 7-12 https://doi.org/10.11110/kjpt.1995.25.1.007
  11. Jang, G. J., and.,W. K. Jang,1999. Taxonomy of the genus Pimpinella (Umbelliferae) in Korea. Korean J. Plant Tax. 29: 151-167. https://doi.org/10.11110/kjpt.1999.29.2.151
  12. Jiang, J. and B. S. Gill. 1994. Nonisotopic in situ hybridization and plant genome mapping: the first ten years. Genome 37: 717-725. https://doi.org/10.1139/g94-102
  13. Kim, S. Y., H. W. Choi, D. H. Koo, C. S. Kim and J. W. Bang. 2005. Karyotype analysis and physical mapping of rDNAs using McFISH in Jeffersonia dubia Benth. Korean J. Med. Crop Sci. 13:48-51.
  14. Kim, S. Y., H. W. Choi, D. H. and J. W. Bang. 2004. Physical mapping of rDNAs using McFISH in Anemarrhena asphodeloides Bunge. Korean J. Med. Crop Sci. 12:515-518.
  15. Kim, S. Y., H. W. Choi, D. H. Koo, W. K. Lee, J. K. Lee and J. W. Bang. 2006a. Characterization of eight Rumex species by FISH (fluorescence in situ hybridization) and 5S rDNA spacer sequences. Korean J. Genetics 28: 243-251.
  16. Kim, S. Y., H. W. Choi, C. S. Kim, J. S. Sung, J. K. Lee and J. W. Bang. 2006b. Cytogenetic analysis of Astragalus species. Korean J. Med. Crop Sci. 14: 250-254.
  17. Kim, S. Y., H. W. Choi, J. W. Bang and J. K. Lee. 2006c. Cytogenetic analysis using mitosis, meiosis chromosomes and bicolor fluorescence in situ hybridization of Bupleurum latissimum Nakai. Korean J. Med. Crop Sci. 14: 354-359.
  18. Kitagawa, M. 1949. Miscellaneous Notes on Apiaceae (Umbelliferae) of Japan and Manchuria (IV). Japanese J. Bot. 17: 557-562.
  19. Kitagawa, M. 1982. Umbelliferae (Apiaceae). In Wild Flowers of Japan. Satake, Y., J. Ohwi, S. Kitamura, S. Watari and T. Tominari (eds.), Heibonsha Ltd., Publishers, Tokyo. Pp. 276-290.
  20. Koo, D. H., S. Y. Kim, K. W. Bang, N. S. Seong and J. W. Bang. 2003. Cytogenetic analysis of Angelica plants using Feulgen staining and multicolor fluorescence in situ hybridization. Korean J. Plant Biotechnology 30: 123-127. https://doi.org/10.5010/JPB.2003.30.2.123
  21. Koo, D. H., Y. K. Hur, D. C. Jin and J. W. Bang. 2002. Karyotype analysis of Korean cucumber cultivar ( Cucumis sativus L. cv Winter long) using C-banding and bicolor fluorescence in situ hybridization. Mol. Cells 13: 413-418.
  22. Krishnappa, D. G. and A. N. Basappa. 1988. SOCGI plant chromosome number reports-VI. J. Cytology and Genetics 23: 38-52.
  23. Lee, B. Y. 2007. Pimpinella L., Sp. Pl. 263, 1753. In The Genera of Vascular Plants of Korea. Flora of Korea Editorial Committee, Academy Publishing Co., Seoul. Pp. 750-751.
  24. Lee, J. K. and S. Y. Kim. 2007. Chromosome Index of Plants in Korea 2007. Korea Research Institute of Bioscience and Biotechnology.
  25. Lee, W. K., H. W. Choi, D. H. Koo, S. Y. Kim and J. W. Bang. 2005. Molecular cytogenetics of five Pulsatilla species to the 5S, 45S rDNA genes by fluorescence in situ hybridization. Korean J. Genetics 27: 179-185.
  26. Leitch, I. J. and J. S. Heslop-Harrison. 1992. Physical mapping of the 18S-5.8S-26S rDNA genes in barley by in situ hybridization. Genome 53: 1013-1018.
  27. Levan, A., K. Frekga and A. Sandberg. 1964. Nomenclature for centromeric position in chromosomes. Hereditas 52: 201-220. https://doi.org/10.1111/j.1601-5223.1964.tb01953.x
  28. Maluszynska, J. and J. S. Heslop-Harrison. 1991. Localization of tandemly repeated DNA sequences in Arabidopsis thaliana. Plant J. 1: 159-166. https://doi.org/10.1111/j.1365-313X.1991.00159.x
  29. Maluszynska, J. and J. S. Heslop-Harrison.1993. Physical mapping of rDNA in Braddica species. Genome 36: 774-781. https://doi.org/10.1139/g93-102
  30. Mukai, Y., T. R. Endo and B. S. Gell. 1991. Physical mapping of the 18S rRNA multigene family in common wheat: identification of a new locus. Chromosoma 100: 71-78. https://doi.org/10.1007/BF00418239
  31. Ohwi, J. 1965. Pimpinella. In Flora of Japan. Shibundo Co., Tokyo. Pp. 667-685.
  32. Romona, S., P. Mazzola and F. M. Raimondo. 1987. Numeri cromosomic per la flora Italiana: 1106-1117.
  33. Rogers, S. O. and A. J. Bendich. 1987. Ribosomal RNA genes in plants: variability in copy number and in the intergenic spacer. Plant Mol. Biol. 9: 509-520. https://doi.org/10.1007/BF00015882
  34. Rostovtseva, T. S. 1982. The chromosome numbers of some species of the family Apiaceae. III. Botaniceskjij Zurnal SSSR 67: 206-210.
  35. Schulz-Gaebel, H. H. 1930. Entwicklungsgeschichtlich-zytologische studien an der Umbelliferen-Unterfamilie der Apioideen. Beitr. Biol. Pfl. 18: 345-398.
  36. Sinha, B. M. B. and A. K. Sinha. 1978. Cytomorphological studies of the colchiploid Pimpinella monoica Daiz. J. Indian Botanical Society 57: 342-345.
  37. Subramanian, D. 1986. Cytotaxonomical studies in south Indian Apiaceae. Cytologia 51: 479-488. https://doi.org/10.1508/cytologia.51.479
  38. Sun, B. Y., J. H. Park, M. J. Kwak, C. H. Kim and K. S. Kim. 1996. Chromosome counts from the flora of Korea with Emphasis on Apiaceae. J. Plant Biol. 39: 15-22.
  39. Verlaque, R. J. 1992. Contandriopoulos and A. Aboucaya. IOPB chromosome data 4 18/19: 9-10.
  40. 장근정. 1992. 한국산 참나물속( Pimpinella L.) 식물의 분류학적 연구. 이학석사 학위논문. 강원대학교.