참고문헌
- 임미라, 유찬, 조재창 . 2003. 환경시료의 생물군집핵산 (community DNA) 추출법 비교 J. Environ. Sci. Eng. 5, 17-19
- 조성진, 박천서, 엄대익, 토양학, 2002. 향문사
- 한송이, 김윤지, 황경숙. 2005. 16S rDNA-ARDRA 법을 이용한 소나무림과 상수리 나무림 토양 내 VBNC 세균군집의 계통학적 특성 비교 . 한국미생물학회지 42, 116-124
- 황경숙, 유승헌. 1995. 유기 영양분 농도에 따른 토양세균의 증식양상과 통상 및 편성 저영양세균의 분리.한국미생물학회지 21,319-324
- Alexander, M. 1985. Introduction to soil microbiology. John Wiley & Sons, New York, USA
- Amagliani, G., C. Giammarini, E. Omiccioli, G. Brandi, and M. Magnani. 2007. Detection of Listeria monocytogenes using a commercial PCR kit and different DNA extraction methods. Food Control. 18, 1137-1142 https://doi.org/10.1016/j.foodcont.2006.06.012
-
Brummer, I.H.M., A. Felske, and I. Wagner-Dobler, 2003. Diversity and seasonal variability of
$\beta$ -proteobacteria in biofilms of polluted rivers: analysis by temperature gradient gel electrophoresis and cloning. Appl. Environ. Microbiol. 69, 4463-4473 https://doi.org/10.1128/AEM.69.8.4463-4473.2003 - Di Pinto, A, V.T. Forte, M.C. Guastadisegni, C. Martino, F.P. Schena, and G. Tantillo. 2007. A comparison of DNA extraction methods for food analysis. Food Control. 18, 76-80 https://doi.org/10.1016/j.foodcont.2005.08.011
- Dilly, O., J. Bloem, A Vos, and J.C. Munch. 2004. Bacterial diversity in agricultural soils during litter decomposition. Appl. Environ. Microbiol. 70, 468-474 https://doi.org/10.1128/AEM.70.1.468-474.2004
- Fortin, N., D. Beaumier, K. Lee, and C.W Greer. 2004. Soil washing improves the recovery of total community DNA from polluted and high organic content sediments. J. Microbiol. Methods 56, 181-191 https://doi.org/10.1016/j.mimet.2003.10.006
- Greene, K. 2002. New method for culturing bacteria. Science 296, 1000
- Guan, L.L., K.E. Hagen, G. W. Tannock, D.R. Korver, G.M. Fasenko, and G.E. Allison. 2003. Detection and identification of Lactobacillus species in crops of broilers of different ages by using PCR-denaturing gradient gel electrophoresis and amplified ribosomal DNA restriction analysis. Appl. Environ. Microbiol. 69, 6750-6757 https://doi.org/10.1128/AEM.69.11.6750-6757.2003
- Ibekwe, A.M., A.C. Kennedy, J.J. Halvorson, and C.-H. Yang. 2007. Characterization of developing microbial communities in Mount St. Helens pyroclastic substrate. Soil Biol. Biochem. 39, 2496-2507 https://doi.org/10.1016/j.soilbio.2007.05.010
- Insam, H. and K. Haselwandter. 1989. Metabolic quotient of the soil microflora in relation to plant succession. Oecologia. 79, 174-178 https://doi.org/10.1007/BF00388474
- Kaeberlein, T., K. Lewis, and S.S. Epstein. 2002. Isolating 'Uncultivable' microorganism in pure culture in a simulated natural environment. Science 296, 1127-1129 https://doi.org/10.1126/science.1070633
- Kim, M.J. and J.S. Chun. 2005. Bacterial community structure in kimchi, a Korean fermented vegetable food, as revealed by 16S rRNA gene analysis. Int. J. Food Microbiol. 103,91-96 https://doi.org/10.1016/j.ijfoodmicro.2004.11.030
- Lagace, L., M. Pitre, M. Jacques, and D. Roy. 2004. Identification of the bacterial community of maple sap by using amplified ribosomal DNA (rDNA) restriction analysis and rDNA sequencing. Appl. Environ. Microbiol. 70, 2052-2060 https://doi.org/10.1128/AEM.70.4.2052-2060.2004
- Lloyd-Jones, G. and D.W.F. Hunter. 2001. Comparison of rapid DNA extraction methods applied to contrasting New Zealand soils. Soil Biol. Biochem. 33, 2053-2059 https://doi.org/10.1016/S0038-0717(01)00133-X
- Nei, M. and W.H. Li. 1979. Mathematics model for studying genetic variation in terms of restriction endoniclease. Proc. Natl. Acad. Sci. USA. 76, 5269-5273
- Plourde-Owobi, L., D. Seguin, M.-A. Baudin, C. Moste, and B. Rokbi. 2005. Molecular characterization of Clostridium tetani strains by pulsed-field gel electrophoresis and colony PCR. Appl. Environ. Microbiol. 71,5604-5606 https://doi.org/10.1128/AEM.71.9.5604-5606.2005
- Saitou, N. and M. Nei. 1987. The neighbor-joining method: a new method for reconstruction phylogenetic trees. Mol. Biol. Evol. 4, 281-295
- Sebat, J.L., F.S. Colwell, and R.L. Crawford. 2003. Metagenomic profiling: Microarray analysis of an environmental genomic library. Appl. Envir. Microbiol. 69, 4927-4934 https://doi.org/10.1128/AEM.69.8.4927-4934.2003
- Sheu, D.S., Y.T. Wang, and C.Y. Lee. 2000. Rapid detection of polyhydroxy-alkanoate-accumulating bacteria isolated from the environment by colony PCR. Microbiology 146, 2019-2025 https://doi.org/10.1099/00221287-146-8-2019
- Smalla, K., M. Oros-Sichler, A. Milling, H. Heuer, S. Baumgarte, R. Becker, G Neuber, S. Kropf, A. Ulrich, and C.C. Tebbe. 2007. Bacterial diversity of soils assessed by DGGE, T-RFLP, and SSCP fingerprints ofPCR-amplified 16SrRNA gene fragments: Do the different methods provide similar results? J Microbiol. Methods 69, 470-479 https://doi.org/10.1016/j.mimet.2007.02.014
- Stackebrandt, E., W. Liesack, and B.M. Goebel. 1993. Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis. FASEB J. 7,232-236 https://doi.org/10.1096/fasebj.7.1.8422969
- Takada-Hoshino, Y. and N. Matsumoto. 2004. 'An improved DNA extraction method using skim milk from soils that strongly adsorb DNA'. Microbes Environ. 19, 13-19 https://doi.org/10.1264/jsme2.19.13
- Tebbe, C.C. and W. Vahjen. 1993. Interference of humic acids and DNA extracted directly from soil in detection and transformation of recombinant DNA from bacteria and yeast. Appl. Environ. Microbiol. 59, 2657-2665
- Thomson, J.D., D.G. Higgins, and T.J. Gibson. 1994. CLUSTAL W; improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680 https://doi.org/10.1093/nar/22.22.4673
- Torsvik, V., F.L. Daae, R.A. Sandaa, and L. Ovreas. 1998. Novel techniques for analysing microbial diversity in natural and perturbed environments. J. Biotechnol. 64, 53-62 https://doi.org/10.1016/S0168-1656(98)00103-5
- Torsvik, V. and L. Ovreas. 2007. Microbial phylogeny and diversity in soil. pp. 23-54. In J.D. van Elsas, J.K. Jansson, and J.T. Trevors (ed.), Modem Soil Microbiology, 2nd. CRC Press, Boca Raton, FL, USA
- Tsai, Y.L. and B.H. Olson. 1991. Rapid method for direct extraction of DNA from soil and sediments. Appl. Environ. Microbiol. 57, 1070-1074
- Whitehouse, C.A. and H.E. Hottel. 2007. Comparison of five commercial DNA extraction kits for the recovery of Francisella tularensis DNA from spiked soil samples. Mol. Cell. Probes 21,92-96 https://doi.org/10.1016/j.mcp.2006.08.003
- Wolters, V., W.L. Silver, D.E. Bignell, D.C. Coleman, P. Lavelle, W.H. van der Putten, P. de Ruiter, J. Rusek, D.H. Wall, D.A. Wardle, L. Brussaard, J.M. Dangerfield, V.K. Brown, K. Giller, D.U. Hooper, O. Sala, J. Tiedje, and J.A. van Veen. 2000. Effects of global changes on above- and belowground biodiversity in terrestrial ecosystems: implications for ecosystem functioning. Bioscience 50, 1089-1098 https://doi.org/10.1641/0006-3568(2000)050[1089:EOGCOA]2.0.CO;2