Interaction Proteome Analysis of Major Intracellular Serine Protease 1 in Bacillus subtilis

  • Park Sun-Young (Systemic Proteomics Research Center, Korea Research Institute of Bioscience and Biotechnology, College of Pharmacy, Chungnam National University) ;
  • Park Byoung-Chul (Systemic Proteomics Research Center, Korea Research Institute of Bioscience and Biotechnology) ;
  • Lee Ah-Young (Systemic Proteomics Research Center, Korea Research Institute of Bioscience and Biotechnology, College of Pharmacy, Chungnam National University) ;
  • Kho Chang-Won (Systemic Proteomics Research Center, Korea Research Institute of Bioscience and Biotechnology) ;
  • Cho Say-Eon (College of Pharmacy, Chung-Ang University) ;
  • Lee Do-Hee (Systemic Proteomics Research Center, Korea Research Institute of Bioscience and Biotechnology) ;
  • Lee Baek-Rak (Department of Microbiology, Inje University) ;
  • Myung Pyung-Keun (College of Pharmacy, Chungnam National University) ;
  • Park Sung-Goo (Systemic Proteomics Research Center, Korea Research Institute of Bioscience and Biotechnology)
  • Published : 2006.05.01

Abstract

Bacterial serine proteases, especially those from Bacillus, have been extensively studied. Intracellular serine protease 1 (Isp1) is responsible for most of the proteolytic activity in B. subtilis. To identify Isp1 substrates and study its physiological functions, a mutant of Isp1, which has lost the enzymatic activity, was constructed. Through a GST affinity chromatographic method, several Bacillus proteins that specifically interacted with S246A mutant Isp1 protein were isolated and then identified by MALDI-TOF analysis. ClpC and elongation factor Tu (EF-Tu) were among those proteins specifically bound to mutant Isp1. In addition, several proteins involved in stationary phase adaptive response (such as RNA polymerase sigma factor, spoIIIE) were also identified. These findings led us to suggest that the major function of this serine protease, whose expression is greatly increased during the stationary phase, is to mediate transition of the cell into the stationary phase in a proper and timely manner.

Keywords

References

  1. Band, L., D. J. Henner, and M. Ruppen. 1987. Construction and properties of an intracellular serine protease mutant of Bacillus subtilis. J. Bacteriol. 169: 444-446 https://doi.org/10.1128/jb.169.1.444-446.1987
  2. Burklen, L., F. Schock, and M. K. Dahl. 1998. Molecular analysis of the interaction between the Bacillus subtilis trehalose repressor TreR and the tre operator. Mol. Gen. Genet. 260: 48-55 https://doi.org/10.1007/s004380050869
  3. Burnett, T. J., G. W. Shankweiler, and J. H. Hageman. 1986. Activation of intracellular serine proteinase in Bacillus subtilis cells during sporulation. J. Bacteriol. 165: 139-145 https://doi.org/10.1128/jb.165.1.139-145.1986
  4. Choi, N. S., K. H. Yoo, K. S. Yoon, K. T. Chang, P. J. Maeng, and S. H. Kim. 2005. Identification of recombinant subtilisins. J. Microbiol. Biotechnol. 15: 35-39
  5. Choi, N. S., S. K. Ju, T. Y. Lee, K. S. Yoon, K. T. Chang, P. J. Maeng, and S. H. Kim. 2005. Miniscale identification and characterization of subtilisins from Bacillus sp. strains. J. Microbiol. Biotechnol. 15: 537-543
  6. Flynn, J. M., S. B. Neher, Y. I. Kim, R. T. Sauer, and T. A. Baker. 2003. Proteomic discovery of cellular substrates of the ClpXP protease reveals five classes of ClpX-recognition signals. Mol. Cell 11: 671-683 https://doi.org/10.1016/S1097-2765(03)00060-1
  7. Gharahdaghi, F., C. R. Weinberg, D. A. Meagher, B. S. Imai, and S. M. Mische. 1999. Mass spectrometric identification of proteins from silver-stained polyacrylamide gel: A method for the removal of silver ions to enhance sensitivity. Electrophoresis 20: 601-605 https://doi.org/10.1002/(SICI)1522-2683(19990301)20:3<601::AID-ELPS601>3.0.CO;2-6
  8. Krasny, L., T. Vacik, V. Fucik, and J. Jonak. 2000. Cloning and characterization of the str operon and elongation factor Tu expression in Bacillus stearothermophilus. J. Bacteriol. 182: 6114-6122 https://doi.org/10.1128/JB.182.21.6114-6122.2000
  9. Lee, A. Y., S. G. Park, C. W. Kho, S. Y. Park, S. Y. Cho, S. C. Lee, D. H. Lee, P. K. Myung, and B. C. Park. 2004. Identification of the degradome of Isp-1, a major intracellular serine protease of Bacillus subtilis, by two-dimensional gel electrophoresis and matrix-assisted laser desorption/ionizationtime of flight analysis. Proteomics 4: 3437-3445 https://doi.org/10.1002/pmic.200400997
  10. Martin-Verstraete, I., J. Stulke, A. Klier, and G. Rapoport. 1995. Two different mechanisms mediate catabolite repression of the Bacillus subtilis levanase operon. J. Bacteriol. 177: 6919-6927 https://doi.org/10.1128/jb.177.23.6919-6927.1995
  11. Min, K. T., C. M. Hilditch, B. Diederich, J. Errington, and M. D. Yudkin. 1993. Sigma F, the first compartment-specific transcription factor of B. subtilis, is regulated by an antisigma factor that is also a protein kinase. Cell 74: 735-742 https://doi.org/10.1016/0092-8674(93)90520-Z
  12. Murao, S., Y. Shimizu, M. Kameda, and T. Nishino. 1982. Inhibition of sporulation of genus Bacillus by various microbial protease inhibitors. Agric. Biol. Chem. 46: 3075-3077 https://doi.org/10.1271/bbb1961.46.3075
  13. Pan, Q. and R. Losick. 2003. Unique degradation signal for ClpCP in Bacillus subtilis. J. Bacteriol. 185: 5275-5278 https://doi.org/10.1128/JB.185.17.5275-5278.2003
  14. Sharp, M. D. and K. Pogliano. 2002. Role of cell-specific SpoIIIE assembly in polarity of DNA transfer. Science 295: 137-139 https://doi.org/10.1126/science.1066274
  15. Shiga, Y., H. Yamagata, and S. Udaka. 1993. Characterization of the gene encoding an intracellular proteinase inhibitor of Bacillus subtilis and its role in regulation of the major intracellular proteinase. J. Bacteriol. 175: 7130-7137 https://doi.org/10.1128/jb.175.22.7130-7137.1993
  16. Shimizu, Y., T. Nishino, and S. Murao. 1983. Purification and characterization of a membrane bound serine protease of Bacillus subtilis IFO 3027. Agric. Biol. Chem. 47: 1775-1782 https://doi.org/10.1271/bbb1961.47.1775
  17. Srivastava, O. P. and A. I. Aronson. 1981. Isolation and characterization of a unique protease from sporulating cells of Bacillus subtilis. Arch. Microbiol. 129: 227-232 https://doi.org/10.1007/BF00425256
  18. Sussman, M. D. and P. Setlow. 1991. Cloning, nucleotide sequence, and regulation of the Bacillus subtilis gpr gene, which codes for the protease that initiates degradation of small, acid soluble proteins during spore germination. J. Bacteriol. 173: 291-300 https://doi.org/10.1128/jb.173.1.291-300.1991