Genomics & Informatics

  • 제4권4호
  • /
  • Pages.167-169
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  • 2006
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  • 1598-866X(pISSN)
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  • 2234-0742(eISSN)
한국유전체학회 (Korea Genome Organization)
권호 표지

New Approach to the Analysis of Palindromic Structure in Genome Sequences

  • 발행 : 2006.12.31
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⟨ 이전 논문 다음 논문 ⟩

초록

PABAP (Palindrome Analysis by BLAST Program) is an analysis system that identifies palindromic sequences from a large genome sequence up to several megabases long. It uses NCBI BLAST as a searching engine, and data processing such as alignment filtration and detection of inverted repeats which satisfy user-defined parameters is performed by manipulating data after populating into a MySQL database. PABAP outperforms publicly available palindrome search program in that it can detect large palindrome with internal spacer at a faster speed from bacterial genomes. It is a standalone application and is freely available for noncommercial users.

키워드

참고문헌

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