Characterization of Protocatechuate 4,5-Dioxygenase Induced from p-Hydroxybenzoate -Cultured Pseudomonas sp. K82

  • Yun, Sung-Ho (Proteome Analysis Team, Korea Basic Science Institute, Department of Biology, Daejeon University) ;
  • Yun, Chi-Young (Department of Biology, Daejeon University) ;
  • Kim, Seung-Il (Proteome Analysis Team, Korea Basic Science Institute)
  • Published : 2004.06.01

Abstract

Pseudomonas sp. K82 has been reported to be an aniline-assimilating soil bacterium. However, this strain can use not only aniline as a sole carbon and energy source, but can also utilize benzoate, p-hydroxybenzoate, and aniline analogues. The strain accomplishes this metabolic diversity by using dif-ferent aerobic pathways. Pseudomonas sp. K82, when cultured in p-hydroxybenzoate, showed extradiol cleavage activity of protocatechuate. In accordance with those findings, our study attempted the puri-fication of protocatechuate 4,5-dioxygenase (PCD 4,5). However the purified PCD 4,5 was found to be very unstable during purification. After Q-sepharose chromatography was performed, the crude enzyme activity was augmented by a factor of approximately 4.7. From the Q-sepharose fraction which exhibited PCD 4,5 activity, two subunits of PCD4,5 (${\alpha}$ subunit and ${\beta}$ subunit) were identified using the N-terminal amino acid sequences of 15 amino acid residues. These subunits were found to have more than 90% sequence homology with PmdA and PmdB of Comamonas testosteroni. The molecular weight of the native enzyme was estimated to be approximately 54 kDa, suggesting that PCD4,5 exists as a het-erodimer (${\alpha}$$_1$${\beta}$$_1$). PCD 4,5 exhibits stringent substrate specificity for protocatechuate and its optimal activity occurs at pH 9 and 15 $^{\circ}C$. PCR amplification of these two subunits of PCD4,5 revealed that the ${\alpha}$ subunit and ${\beta}$ subunit occurred in tandem. Our results suggest that Pseudomonas sp. K82 induced PCD 4,5 for the purpose of p-hydroxybenzoate degradation.

Keywords

References

  1. Agric. Biol. Chem. v.48 Purification and characterization of catechol 1,2-dioxygenase from aniline-assimilating Rhodococcus erythropolis AN-13 Aoki, K;K. Konohana;R. Shinke;H. Nishira https://doi.org/10.1271/bbb1961.48.2087
  2. Protocatechuate 4,5-dioxygenase from Pseudomonas testosteroni. Methods Enzymol v.188 Arciero, D.M;A.M. Orville;J.D Lipscomb
  3. Anal. Biochem. v.72 Rapid and sensitive method for quantification of microgram quantities of protein utilizing the principle of protein-dye binding Bradford, M.M. https://doi.org/10.1016/0003-2697(76)90527-3
  4. J. Biol. Chem. v.256 Purification and properties of protocatechuate 3, 4-dioxygenase from Pseudomonas putida Bull, C;D. Ballou
  5. Arch. Microbiol. v.161 Purification and properties of a homodimeric protocatechuate 4, 5-dioxygenase from Rhizobium leguminosarum Chen, Y.P.;C.R. Lovell https://doi.org/10.1007/BF00276482
  6. Biochem. J. v.109 The metabolism of protocatechuate by Pseudomonas testosterone Dagley, S;P.J. Geary;J.M. Wood
  7. Kor. J. Microbiol. v.30 Isolation and Characterization Aniline-Degrading Bacteria Kanhg, H.Y;S.I. Kim;M.J. Woo;Y.K. Park;Y.N. Lee
  8. FK-8-2. Agric. Biol. Chem. v.55 Induction, purification and characterization of catechol 2,3-dioxygenase from aniline-assimilating Pseudomonas sp Nakanishi Y.;S. Murakami;R. Shinke;K. Aoki https://doi.org/10.1271/bbb1961.55.1281
  9. J. Bacteriol. v.172 Molecular cloning of protocatechuate 4,5-dioxygenase genes of Pseudomanas paucimobills Noda, Y.;S. Nichikawa;K. Ahiozuka;H. Kandokura;H. Hakajima;K. Yoda;Y. Katayama;N. Morohoshi;T. Haraguchi;M. Yamasaki
  10. Biochem. Biophys. Acta. v.22 Purification and some properties of protocatechuate4,-5dioxygenase Ono, K;M. Nozaki;O. Hayaishi
  11. Microbiology. v.147 Comamonas testosteroni BR6020 possesses a single genetic locus for extradiol cleavage of protocatechuate Providenti, M.A.;J. Mampel;S. MacSween;A.M. Cook;R.C. Wyndham