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Recent Progress in the Evolution and Ecology of Actinorhizal Symbioses

  • Jeong, Soon-Chun (Laboratory of Plant Genome Research, Korea Research Institute of Bioscience and Biotechnology) ;
  • David D. Myrold (Department of Crop and Soil Science, Oregon State University)
  • Published : 2003.02.01
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References

  1. Albert, V. A., Backlund, A., Bremer, K., Chase, M. W., Manhart, J. R., Mishler, B. D. and Nixon, K. C. 1994. Functional con-straints and rbcL evidence for land plant phylogeny. Ann. Mo. Bot. Gard. 81:534-567 https://doi.org/10.2307/2399902
  2. Baker, D. D. 1987. Relationships among pure cultured strains of Frankia based on host specificity. Physiol. Plant Pathol. 70:245-248 https://doi.org/10.1111/j.1399-3054.1987.tb06139.x
  3. Baker, D. D. and O'Keefe, D. 1984. A modified sucrose fraction-ation procedure for the isolation of frankiae from actinorhizal root nodules and soil samples. Plant Soil 78:23-28 https://doi.org/10.1007/BF02277837
  4. Benecke, U. 1969. Symbiosis of alder nodules in New Zealand. Plant Soil 30: 145-149 https://doi.org/10.1007/BF01885276
  5. Benson, D. R. and Clawson, M. L. 2000. Evolution of the acti-norhizal plant symbiosis, In: Prokaryotic nitrogen fixation: A model system for the analysis of biological process, ed. by E.W Thiplett, 207-224 pp. Horizon Scientific Press, Wymondham, UK
  6. Benson, D. R. and Silvester, W. B. 1993. Biology of Frankia strains, actinomycete symbionts of actinorhizal plants. Micro-biol. Rev. 57:293-319
  7. Bousquet, J. and Lalonde, M. 1990. The Genetics of Actinorhizal Betulaceae. In: The Biology of Frankia and Actinorhizal Plants, ed. by C. R. Schwintzer and J. D. Tjepkema, 239-261pp. Academic Press, Inc., San Diego
  8. Brunchorst, J. 1887. Die Struktur der Inhaltsk$\ddot u$rper in den Zellen einiger Wurzelanschwellungen. Bergens Mus. Aarsb. 235pp
  9. Burleigh, S. and Torrey, J. G. 1990. Effectiveness of different Frankia cell types as inocula for the actinorhizal plant Casua-rina. Appl. Environ. Microbiol. 56:2565-2576
  10. Callaham, D., Del Tredici, P. and Torrey, J. G. 1978. Isolation and cultivation in vitro of the actinomycete causing root nodula-tion in Comptonia. Science 199:899-902 https://doi.org/10.1126/science.199.4331.899
  11. Chase M. W., Soltis, D. E., Olmstead, R. G.,. Morgan, D., Les, D. H., Mishler, B. D., Duvall, M. R., Price, R. A., Hills, H.G., Qui, Y.-L., Kron, K. A., Rettig, J. H., Conti, E., Palmer, J. D., Manhart, J. R., Sytsma, K. J., Michaels, H. J., Kress, W. J., Karol, K. G., Clark, W. D., Hedren, M., Gaut, B. S., Jansen, R. K., Kim, K.-J., Wimpee, C. R, Smith, J. R, Furnier, G. R., Strauss, S. H., Xiang, G.-Y., Plunkett, G. M., Soltis, P. S., Swensen, S. M., Williams, S. E., Gadek, P. A., Quinn, C. J., Eguiarte, L. E., Golenberg, E., Learn, Jr., G. H., Graham, S. W., Barrett, S. C. H., Dayanandan, S. and Albert, V. A. 1993. Phylogenetics of seed plants: An analysis of nucleotide sequences from .the plastid gene rbcL. Ann. Mo. Bot. Gard. 80:528-580 https://doi.org/10.2307/2399846
  12. Clawson, M. L. and Benson, D. R. 1999. Natural diversity of Frankia strains in actinorhizal root nodules from promiscuous hosts in the family Myricaceae. Appl. Environ. Microbiol. 65:4521-7
  13. Cournoyer, B. and Lavire, C. 1999. Analysis of Frankia evolu-tionary radiation using glnII sequences. FEMS Microbiol Lett. 177:29-34 https://doi.org/10.1111/j.1574-6968.1999.tb13709.x
  14. Crannell, W. K., Tanaka, Y. and Myrold, D. D. 1994. Calcium and pH interaction on root nodulation of nursery grown red alder (Alnus rubra Bong.) seedlings by Frankia. Soil Biol. Biochem. 26:607-614 https://doi.org/10.1016/0038-0717(94)90249-6
  15. Cronquist, A. 1988. The Evolution and Classification of Flower-ing Plants, 2nd ed. Allen, Lawrence, Kansas
  16. Dawson, J. O. 1983. Dinitrogen fixation in forest ecosystems. Can. J. Microbiol. 29:979-992 https://doi.org/10.1139/m83-155
  17. Diem, H. G. and Dommergues, Y. R. 1990. Current and potential uses and management of Casuarinaceae in the tropics and subtropics. In: The Biology of Frankia and Actinorhizal Plants, ed. by C.R. Schwintzer and J.D. Tjepkema, 317-342 pp. Academic Press, Inc., San Diego
  18. Doran, T. J., Hodgson, A. L. M., Davies, J. K. and Radford, A. J. 1993. Characterisation of a highly repeated DNA sequence from Mycrobacterium bovis. FEMS Microbiol. Lett. 111:147-152 https://doi.org/10.1111/j.1574-6968.1993.tb06377.x
  19. Gauthier, D., Jaffre, T. and Prin, Y. 2000. Abundance of Frankia from Gymnostoma spp. in the rhizosphere of Alphitonia neo-caledonica, a non-nodulated Rhamnaceae endemic to New Caledonia. Eur. J. Soil Biol. 36:169-175 https://doi.org/10.1016/S1164-5563(00)01061-X
  20. Hahn, D., Kester, R., Starrenburg, M. J. C. and Akkermans, A. D. L 1990. Extraction of ribosomal RNA from soil for detection of Frankia with oligonucleotide probes. Arch. Microbiol. 154:329-335 https://doi.org/10.1007/BF00276527
  21. Hahn, D., Nickel, A. and Dawson, J. 1999. Assessing Frankia populations in plants and soil using molecular methods. FEMS Microbiol. Ecol. 29:215-227 https://doi.org/10.1111/j.1574-6941.1999.tb00613.x
  22. Hibbs, D. E. and Cromack, Jr., K. 1990. Actinorhizal plants in Pacific Northwest forests. In: The Biology of Frankia and Actinorhizal Plants, ed. by C.R. Schwintzer and J.D. Tjep-kema, 343-363pp. Academic Press, Inc., San Diego
  23. Hilger, A. B. and Myrold, D. D. 1992. Quantitation of soil Frankia by bioassay and gene probe methods: response to host and non-host rhizospheres and liming. Acta Ecol. 13:505-506
  24. Huelsenbeck, J.P. and Rannala, B. 1997. Phylogenetic methods come of age: Testing hypotheses in an evolutionary context. Science 276:227-232 https://doi.org/10.1126/science.276.5310.227
  25. Huguet, V., Batzli, J. M., Zimpfer, J. F., Normand, P., Dawson, J. O. and Fernandez, M. P. 2001. Diversity and specificity of Frankia strains in nodules of sympathc Myrica gate, Alnus incana, and Shepherdia canadensis determined by rrs gene polymorphism. Appl. Environ. Microbiol. 67:2116-2122 https://doi.org/10.1128/AEM.67.5.2116-2122.2001
  26. Huss-Danell, K. and Myrold, D. D. 1994. Intragenenc variation in nodulation of Alnus: Consequences for quantifying Frankia infective units in soil. Soil Biol. Biochem. 26:525-531 https://doi.org/10.1016/0038-0717(94)90238-0
  27. Jeong, S. C., Liston, A. and Myrold, D. D. 1997. Molecular phy-logeny of the genus Ceanothus (Rhamnaceae) using rbcL and ndhF sequences. Theo. Appl. Genet. 94:852-857 https://doi.org/10.1007/s001220050486
  28. Jeong, S. C. and Myrold, D. D. 1999. Genomic fingerprinting of Frankia microsymbionts from Ceanothus copopulations using repetitive sequences and polymerase chain reactions. Can. J. Bot. 77:1220-1230 https://doi.org/10.1139/cjb-77-9-1220
  29. Jeong, S. C., Ritchie, N. J. and Myrold, D. D. 1999. Molecular phylogenies of plants and Frankia support multiple origins of actinorhizal symbioses. Mol. Phylogen. Evol. 13:493-503 https://doi.org/10.1006/mpev.1999.0692
  30. Jeong, S. C. and Myrold, D. D. 2001. Population size and diver-sity of Frankia m soils under Ceanothus velutinus and Dou-glas-fir stands. Soil Biol. Biochem. 33:931-941 https://doi.org/10.1016/S0038-0717(00)00241-8
  31. Lechevalier, M. P. and Ruan, J.-S. 1984. Physiological and chem-ical diversity of Frankia spp. isolated from nodules of Compo-tonia peregrina (L.) Coult. and Ceanothus americanus L. Plant Soil 78:15-22 https://doi.org/10.1007/BF02277836
  32. Lalonde, M., Simon, L., Bousquet, J. and Seguin A. 1988. Advances in the taxonomy of Frankia: recognition of species alni and eleagni and novel subspecies pommerii and vandijkii. In: Nitrogen Fixation: Hundred Years After, ed. by H. Bothe H, F.J. de Bruijn, and W.E. Newton WE, 671-680 pp. Gustav Fisher Verlag, Stutgart
  33. Maggia, L. and Bousquet, J. 1994. Molecular phylogeny of the actinorhizal Hamamelidae and relationship with host promis-cuity towards Frankia. Mol. Ecol. 3:459-467 https://doi.org/10.1111/j.1365-294X.1994.tb00124.x
  34. Maunuksela, L., Zepp, K., Koivula, Y., Zeyer, J., Haahtela, K. and Hahn, D. 1999. Analysis of Frankia populations in three soils devoid of actinorhizal plants. FEMS Microbiol. Ecol. 28:11-21 https://doi.org/10.1111/j.1574-6941.1999.tb00556.x
  35. McMinn, H. E. 1942. Ceanothus: Part II; a systematic study of the genus Ceanothus. 129-308 pp. Santa Barbara Botanic Garden, Santa Barbara
  36. Miller, I. M. and Baker, D. D. 1986. Nodulation of actinorhizal plants by Frankia strains capable of both root hair infection and intercellular penetration. Protoplasma 131:82-91 https://doi.org/10.1007/BF01281689
  37. Moran, N. A., Munson, M. A., Bauman, P. and Ishikawa, H. 1993. A molecular clock in endosymbiotic bacteria is cali-brated using the insect hosts. Proc. R. Soc. Lond. B Biol. Sci. 253:167-171 https://doi.org/10.1098/rspb.1993.0098
  38. Murry, M. A., Konopka, A. S., Pratt, S. D. and Vandergon, T. L. 1997. The use of PCR-based typing methods to assess the diversity of Frankia nodule endophytes of the actinorhizal shrub Ceanothus. Physiol. Plant 99:714-721 https://doi.org/10.1111/j.1399-3054.1997.tb05376.x
  39. Murry, M. A., Zhang, D., Schneider, M. and de Bruijn, F. J. 1995. Use of repetitive sequences and the polymerase chain reaction (rep-PCR) to fingerprint the genomes of Frankia isolates. Symbiosis 19:223-240
  40. Myrold, D. D., Hilger, A. B. and Strauss, S. H. 1990. Detecting Frankia m soil using PCR. 429 p. In: Nitrogen Fixation: Achievements and Objectives, ed by P.M. Gresshoff, L.E. Roth, G. Stacey, and W.E. Newton. 429 pp. Chapman and Hall, New York
  41. Myrold, D. D. and Huss-Danell, K. 1994. Population dynamics of Alnfs-infective Frankia in a forest soil with and without host trees. Soil Biol. Biochem. 26:533-540 https://doi.org/10.1016/0038-0717(94)90239-9
  42. Navarro, E., Nalin, R., Gauthier, D. and Normand, P. 1997. The nodular microsymbionts of Gymnostoma spp. are Elaeagnus-infective Frankia strains. Appl. Environ. Microbiol. 63:1610-1616
  43. Navarro, E., Jaffre, T., Gauthier, D., Gourbiere, F., Rinaudo, G., Simonet, P. and Normand, P. 1999. Distribution of Gymnos-toma spp. microsymbiotic Frankia strains in New Caledonia is related to soil type and to host-plant species. Mol. Ecol. 8:1781-1788 https://doi.org/10.1046/j.1365-294x.1999.00742.x
  44. Newcomb, W. and Wood, S. M. 1987. Morphogenesis and fine structure of Frankia (Actinomycetales): the microsymbiont of nitrogen-fixing actinorhizal root nodules. Int. Rev. Cytol. 109:1-88 https://doi.org/10.1016/S0074-7696(08)61719-2
  45. Nickel, A., Pelz, O., Hahn, D., Saurer, M., Siegwolf, R. and Zeyer, J. 2001. Effect of inoculation and leaf litter amendment on establishment of nodule-forming Frankia populations in soil. Appl. Environ. Microbiol. 67:2603-2609 https://doi.org/10.1128/AEM.67.6.2603-2609.2001
  46. Normand, P., Orso, S., Cournoyer, B., Jeannin, P., Chapelon, C., Dawson, J., Evtushenko, L. and Misra, A. K. 1996. Molecular phylogeny of the genus Frankia and related genera and emen-dation of the family Frankiaceae. Int. J. System. Bacteriol. 46:1-9 https://doi.org/10.1099/00207713-46-1-1
  47. Ochman, H. and Wilson, A. C. 1987. Evolution in bacteria: evi-dence for a universal substitution rate in cellular genomes. J. Mol. Evol. 26:74-86 https://doi.org/10.1007/BF02111283
  48. Page, R. D. M. 1994. Parallel phylogenies: Reconstructing the history of host-parasite assemblages. Clastistics 10:155-173 https://doi.org/10.1111/j.1096-0031.1994.tb00170.x
  49. Perez, N.-O., Vasquez, L. and Valdes, M. 1999. Genetic charac-terization of Mexican Frankia strains nodulating Casuarina equisetfolia. Can. J. Bot. 77:1214-1219 https://doi.org/10.1139/cjb-77-9-1214
  50. Picard, C., Ponsonnt, C., Paget, E., Nesme, X. and Simonet, P. 1992. Detection and enumeration of bacteria in soil by direct DNA extraction and polymerase chain reaction. Appl. Envi-ron. Microbiol. 58:2717-2711
  51. Racette, S. and Torrey, J. G. 1989. Root nodule iniation in Gym-nostoma (Casuarinaceae) and Shepherdia (Elaeagnaceae) induced by Frankia strain HFPGpII. Can. J. Bot. 67:2873-2879 https://doi.org/10.1139/b89-368
  52. Ramirez-Saad, H., Janse, J. D. and Akkermans, A. D. L. 1998. Root nodules of Ceanothus caeruleus contain both the $N_2$-fix-ing Frankia endophyte and a phylogenetically related Nod/ Fix actinomycete. Can. J. Microbiol. 44:140-148 https://doi.org/10.1139/cjm-44-2-140
  53. Richards, J. W., Krumholz, G. D., Chval, M. S. and Tisa, L. S. 2002. Heavy metal resistance patterns of Frankia strains. Appl. Environ. Microbiol. 68:923-927 https://doi.org/10.1128/AEM.68.2.923-927.2002
  54. Ritchie, N. J. and Myrold, D. D. 1999. Geographic distribution and genetic diversity of Ceanothus-infective Frankia strains. Appl. Environ. Microbiol. 65:1378-1383
  55. Rouvier, C., Prin, Y., Redell, P., Normand, P. and Simonet, P. 1996. Genetic diversity among Frankia strains nodulating members of the family Casuarinaceae in Australia revealed by PCR and restriction fragment length polymorphism analysis with crushed root nodules. Appl. Environ. Microbiol. 62:979-985
  56. Sadowsky, M. J., Kinkel, L. L., Bowers, J. H. and Schottel, J. L. 1996. Use of repetitive intergenic DNA sequences to classify pathogenic and disease-supressive Streptomyces strains. Appl. Environ. Microbiol. 62:3489-3493
  57. Scott, W. 1973. Some soil factors affecting snowbrush nodula-tion. Ph.D. Thesis. Oregon State Univ., Corvallis, OR. (Diss. Abstr. 33:4074)
  58. Simonet, P., Grosjean, M.-C., Misra, A. K., Nazaret, S., Courn-oyer, B. and Normand, P. 1991. Frankia genus-specific char-acterization by polymerase chain reaction. Appl. Environ. Microbiol. 57:3278-3286
  59. Simonet, P., Navarro, E., Rouvier, C., Reddell, P., Zimpfer, J., Dommergues, Y., Bardin, R., Combarro, P., Hamelin, J., Domenach, A.-M., Gourbiere, F., Prin, Y., Dawson, J. O. and Normand, P. 1999. Co-evolution between Frankia popula-tions and host plants in the family Casuarinaceae and conse-quent patterns of global dispersal. Environ. Microbiol. 1:525-533 https://doi.org/10.1046/j.1462-2920.1999.00068.x
  60. Simonet, P., Normand, P., Moiroud, A. and Bardin, R. 1990. Identification of Frankia strains in nodules by hybridization of polymerase chain reaction products with strain-specific oligo-nucleotide probes. Arch. Microbiol. 153:235-240 https://doi.org/10.1007/BF00249074
  61. Smolander, A. and Sundman, V. 1987. Frankia in acid soils of forests devoid of actinorhizal plants. Physiol. Plant 70:297-303 https://doi.org/10.1111/j.1399-3054.1987.tb06147.x
  62. Smolander, A., van Dijk, C. and Sundman, V. 1988. Survival of Frankia strains introduced into soil. Plant Soil 106:65-72 https://doi.org/10.1007/BF02371196
  63. Soltis, D. E., Soltis, P. S., Morgan, D. R., Swensen, S. M., Mullin, B. C., Dowd, J. M. and Martin, P. G. 1995. Chloroplast gene sequence data suggest a single origin of the predisposition for symbiotic nitrogen fixation in angiosperms. Proc. Natl Acad. Sci. USA 92:2647-2651 https://doi.org/10.1073/pnas.92.7.2647
  64. Soltis, D. E., Soltis, P. S., Chase, M. W., Mort, M. E., Albach, D. C., Zanis, M., Savolainen, V., Hahn, W. H., Hoot, S. B., Fay, M. F., Axtell, M., Swensen, S. M., Prince, Li. M., Kress, W. J., Nixon, K. C. and Farris, J. S. 2000. Angiosperm phytogeny inferred from 18S rDNA, ,rbcL, and atpB sequences. Bot. J. Linnean Soc. 133:381-461 https://doi.org/10.1111/j.1095-8339.2000.tb01588.x
  65. Sprent, J. I. 1994. Evolution and diversity in the legume-rhizo-bium symbiosis: chaos theory? Plant Soil 161:1-10 https://doi.org/10.1007/BF02183080
  66. Swensen, S. M. 1996. The evolution of actinorhizal symbiosis: Evidence for multiple origins of the symbiotic association. Am. J. Bot. 83:1503-1512 https://doi.org/10.2307/2446104
  67. Tisa, L. S., Chval, M. S., Krumholz, G. D. and Richards, J. W. 1999. Antibiotic resistance patterns of Frankia strains. Can. J. Bot. 77:1257-1260 https://doi.org/10.1139/cjb-77-9-1257
  68. Torrey, J. G. 1978. Nitrogen fixation by actinomycete-nodulated angiosperms. BioSci. 28:586-591 https://doi.org/10.2307/1307515
  69. Torrey, J. G. and Tjepkema, J. D. 1979. Preface. Bot. Gaz, 140(Suppl): i-ii. https://doi.org/10.1086/337049
  70. van Dijk, C. 1984. Ecological aspects of spore formation in the Frankia-Alnus symbiosis. Ph.D. Thesis. State University, Leiden, the Netherlands. 154 p.
  71. van Dijk, C., Sluimer, A. and Weber, A. 1988. Host range differ-entiation of spore-positive and spore-negative strain types of Frankia in stands of Alnus glutinosa and Alnus incana in Fin-land. Physiol. Plant 72:349-358 https://doi.org/10.1111/j.1399-3054.1988.tb05844.x
  72. Versalovic, J., Koeuth, T. and Lupski, J. R. 1991. Distribution of repetitive DNA sequences in eubacteria and application to fin-gerprinting of bacterial genomes. Nucleic Acids Res. 24:6823-6831
  73. Versalovic, J., Schneider, M., de Bruijn, F. J. and Lupski, J. R. 1994. Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction. Methods Mol. Cell. Biol. 5:25-40
  74. Wall, L. G. 2000. The Actinorhizal Symbiosis. J. Plant Growth Reg. 19:167-182
  75. Wheeler, C. T. and Miller, I. M. 1990. Current and potential uses of actinorhizal plants in Europe. In: The Biology of Frankia and Actinorhizal Plants, ed. by C.R. Schwintzer and J.D. Tjep-kema, 365-389 pp. Academic Press, Inc., San Diego
  76. Wollum, A. G. II, Youngberg, C. T. and Chichester, F. W. 1968. Relation of previous timber stand age to nodulation of Cean-othus velutinus. For. Sci. 14:114-118
  77. Zimpfer, J. F., Kennedy, G. J., Smyth, C. A., Hamelin, J., Navarro, E. and Dawson, J. O. 1999. Localization of Casua-rina-infective Frankia near Casuarina cunninghamiana trees in Jamaica. Can. J. Bot. 77:1248-1256 https://doi.org/10.1139/cjb-77-9-1248

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