DOI QR코드

DOI QR Code

Biochemical Characterization of Oligomerization of Escherichia coli GTP Cyclohydrolase I

  • Lee, Soo-Jin (Biochemical Characterization of Oligomerization of Escherichia coli GTP Cyclohydrolase) ;
  • Ahn, Chi-Young (The National Creative Research Initiative Center for Genetic Reprogramming, Institute for Molecular Biology and Genetics, Seoul National University) ;
  • Park, Eung-Sik (The National Creative Research Initiative Center for Genetic Reprogramming, Institute for Molecular Biology and Genetics, Seoul National University) ;
  • Hwang, Deog-Su (The National Creative Research Initiative Center for Genetic Reprogramming, Institute for Molecular Biology and Genetics, Seoul National University) ;
  • Yim, Jeong-Bin (The National Creative Research Initiative Center for Genetic Reprogramming, Institute for Molecular Biology and Genetics, Seoul National University)
  • Published : 2002.05.31

Abstract

GTP cyclohydrolase I (E.C. 3.5.4.16) is a homodecameric protein that catalyzes the conversion of GTP to 7,8-dihydroneopterin triphosphate (H2NTP), the initial step in the biosynthesis of pteridines. It was proposed that the enzyme complex could be composed of a dimer of two pentamers, or a pentamer of tightly associated dimers; then the active site of the enzyme was located at the interface of three monomers (Nar et al. 1995a, b). Using mutant enzymes that were made by site-directed mutagenesis, we showed that a decamer of GTP cyclohydrolase I should be composed of a pentamer of five dimers, and that the active site is located between dimers, as analyzed by a series of size exclusion chromatography and the reconstitution experiment. We also show that the residues Lys 136, Arg139, and Glu152 are of particular importance for the oligomerization of the enzyme complex from five dimers to a decamer.

Keywords

References

  1. Ahn, C., Byun, J. and Yim, J. (1997) Purification, cloning, and functional expression of dihydroneopterin triphosphate 2'-epimerase from Escherichia coli. J. Biol. Chem. 272, 15323-15328. https://doi.org/10.1074/jbc.272.24.15323
  2. Ahn, C., Park, S. I., Kim, J. M. and Yim, J. (1995) Affinity labeling of E. coli GTP cyclohydrolase I by a dialdehyde derivative of guanosine triphosphate. J. Biochem. Mol. Biol. 28, 72-78.
  3. Attri, A. K., Lewis, M. S. and Korn, E. D. (1991) The formation of actin oligomers studied by analytical ultracentrifugation. J. Biol. Chem. 266, 6815-6824.
  4. Auerbach, G., Herrmann, A., Bracher, A., Bader, G., Gutlich, M., Fischer, M., Neukamm, M., Garrido-Franco, M., Richardson, J., Nar, H., Huber, R. and Bacher, A. (2000) Zinc plays a key role in human and bacterial GTP cyclohydrolase I. Proc. Natl. Acad. Sci. USA 97, 13567-13572. https://doi.org/10.1073/pnas.240463497
  5. Brown, G. M. and Williamston, J. M. (1987) Biosynthesis of folic acid, riboflavin, thiamine, and pantothenic acid; in Escherichia coli and Salmonella typhimurium, Neidhardt, F. C. (ed), Vol. 1, pp. 521-538, Am. Soc. Microbiol., Washington, DC.
  6. Cha, K. W., Jacobson K. B. and Yim. J. (1991) Isolation and characterization of GTP cyclohydrolase I from mouse liver. Comparison of normal and the hph-1 mutant. J. Biol. Chem. 266, 12294-12300.
  7. Frimpong, K. and Rodwell, V. W. (1994) Them active site of hamster 3-hydroxy-3-methylglutaryl-CoA reductase reside at the subunit interface and incorporates catalytically essential acidic residues from separate polypeptide. J. Biol. chem. 269, 1217-1221.
  8. Fukushima, K., Richter, W. E. Jr. and Shiota, T. (1977) Partial purification of 6-(D-erythro-1',2',3'-trihydroxypropyl)-7,8- dihydropterin triphosphate synthetase from chicken liver. J. Biol. Chem. 252, 5750-5755.
  9. Katzenmeier, G., Schmid, C. and Bacher, A. (1990) Cloning and expression of the putative gene coding for GTP cyclohydrolase I from Escherichia coli. FEMS Microbiol. Lett. 66, 231-234. https://doi.org/10.1111/j.1574-6968.1990.tb04002.x
  10. Katzenmeier, G., Schmid, C., Kellerman, J., Lottspeich, F. and Bacher, A. (1991) Biosynthesis of tetrahydrofolate. Sequence of GTP cyclohydrolase I from Escherichia coli. Biol. Chem. Hoppe Seyler 372, 991-997. https://doi.org/10.1515/bchm3.1991.372.2.991
  11. Kim, S. I., Kim, S. J., Leem, S. H., Oh, K. H., Kim, S. H. and Park, Y. M. (2001) Site-directed mutagenesis of two cysteines (155, 202) in catechol 1,2-dioxygenase $I_{1}$ of Acinetobacter lwoffii K24. J. Biochem. Mol. Biol. 34, 172-175.
  12. Kim, S. Y., Song, E. J., Chang, K. H., Kim, E., Chae, S. K., Lee, H. and Lee, K. J. (2001) Oligomeric Structure Determine the Biochemical Characteristics of Human Nucleoside Diphosphate Kinases. J. Biochem. Mol. Biol. 34, 355-364.
  13. Lee, J., Seo, H. Y., Jeon, E. S., Park, O. S., Lee, K. M., Park, C. U. and Kim, K. S. (2001) Cooperative activity of subunits of human ferritin heteropolymers in Escherichia coli. J. Biochem. Mol. Biol. 34, 365-370.
  14. Lewis, M. S. and Youle, R. J. (1986) Ricin subunit association. Thermodynamics and the role of the disulfide bond in toxicity. J. Biol. Chem. 261, 11571-11577.
  15. Maley, F., Pedersen-Lane, J. and Changchien, L. (1995) Complete restoration of activity to inactive mutants of Escherichia coli thymidylate synthase: evidence that E. coli thymidylate synthase is a half-the-sites activity enzme. Biochemistry 34, 1469-1473. https://doi.org/10.1021/bi00005a001
  16. Malinowski, D. P. and Fridovich, I. (1979) Subunit association and side-chain reactivities of bovine erythrocyte superoxide dismutase in denaturing solvents. Biochemistry 18, 5055-5060 https://doi.org/10.1021/bi00590a005
  17. Mancini, G., Carbonara, A. O. and Heremans, J. F. (1965) Immunochemical quantitation of antigens by single radial immunodiffusion. Immunochem. 2, 235-254 https://doi.org/10.1016/0019-2791(65)90004-2
  18. Meining, W., Bacher, A., Bachmann, L., Schmid, C., Weinkauf, S., Huber, R. and Nar, H. (1995) Elucidation of crystal packing by X-ray diffration and freeze-etching electron microscopy. Studies on GTP cyclohydrolase I of Escherichia coli. J. Mol. Biol. 253, 208-218. https://doi.org/10.1006/jmbi.1995.0545
  19. Nar, H., Huber, R., Auerbach, G., Fischer, M., Hosl, C., Ritz, H., Racher, A., Meining, W., Eberhardt, S. and Bacher, A. (1995b) Active site topology and reaction mechanism of GTP cyclohydrolase I. Proc. Natl. Acad. Sci. USA 92, 12120-12125. https://doi.org/10.1073/pnas.92.26.12120
  20. Nar, H., Huver, R., Meining, W., Schmid, C., Weinkauf, S. and Bacher, A. (1995a) Atomic structure of GTP cyclohydrolase I. Structure 3, 459-466. https://doi.org/10.1016/S0969-2126(01)00179-4
  21. Nichol, C. A., Smith, G. K. and Dutch, D. S. (1985) Biosynthesis and metabolism of tetrahydrobiopterin and molybdopterin. Annu. Rev. Biochem. 54, 729-764. https://doi.org/10.1146/annurev.bi.54.070185.003501
  22. Ozturk, D. H., Dorfman, R. H., Scapin, G., Sacchettini, J. C. and Grubmeyer, C. (1995) Structure and function of Salmonella typhimurium ortate phosphoribosyltansferase: protein complementation reveals shared active sites. Biochemistry 34, 10765-10770.
  23. Schmid, C., Ladenstein, R., Lueke, H., Huber, R. and Bacher, A. (1992) Crystallization and preliminary crystallographic characterization of GTP cyclohydrolase I from Escherichia coli. J. Mol. Biol. 226, 1279-1281. https://doi.org/10.1016/0022-2836(92)91067-Y
  24. Shiota, Y., Palumbo, M. P. and Tsal, L. (1967) A Chemically prepared formamidopyrimidine derivative of guanosine triphosphate as a possible intermediate in pteridine biosynthesis. J. Biol. chem. 242, 1967-1969
  25. Tobias, K. E. and Kashana, C. (1993) Intersubunit location of the active site of mammalian omithine decarboxylase as determined by hybridization of site-directed mutants. Biochemistry 22, 5842-5847.
  26. Wang, W., Gorrell, A., Honzatko, R. B. and Fromm, H. J. (1997) A study of Escherichia coli adenylosuccinate syntherase association states and the interface residues of the homodimer. J. Biol. Chem. 272, 7078-7084. https://doi.org/10.1074/jbc.272.11.7078
  27. Wente, S. R. and Schachman, H. K. (1987) shared active site in oligomeric enzymes: model studies with defective mutants of aspartate transcarbamoylase produced by site-directed mutagenesis. Proc. Natl. Acad. Sci. USA 84, 31-35. https://doi.org/10.1073/pnas.84.1.31
  28. Yim, J. J. and Brown, G. M. (1976) Characteristics of guanosine triphosphate cyclohydrolase I purified from Escherichia coli. J. Biol. Chem. 251, 5087-5094.
  29. Yuckenberg, P. D., Witney, F., Geisselsoder, F. and McClary, G. (1991) Directed Mutagenesis (McPherson, M. J. ed.) pp. 27-48, Oxford Univ. Press, New York.

Cited by

  1. A yeast 2-hybrid analysis of human GTP cyclohydrolase I protein interactions vol.97, pp.5, 2006, https://doi.org/10.1111/j.1471-4159.2006.03836.x