Genetic Variation of the Mitochondrial Cytochrome b Sequence in Korean Rana rugosa (Amphibia; Ranidae)

  • Hyun Ick Lee (Department of Biology, College of Sciences, Inha University) ;
  • Dong Eun Yang (Department of Biology, College of Sciences, Inha University) ;
  • Yu Ri Kim (Department of Biology, College of Sciences, Inha University) ;
  • Hyuk Lee (Department of Biology, College of Sciences, Inha University) ;
  • Jung Eun Lee (Department of Biology, College of Sciences, Inha University) ;
  • Suh Yung Yang (Department of Biology, College of Sciences, Inha University) ;
  • Hei Yung Lee (Department of Biology, College of Sciences, Inha University)
  • 발행 : 1999.03.01

초록

Nucleotide sequences of a 501 base-pair (bp) fragment in the mitochondrial cytochrome b (cyt b) gene were analyzed for 12 populations of Rana rugosa from Korea and Japan using a polymerase chain reaction (PCR) and direct silver sequencing. Two genetically distinct groups (type-A and type-B) were found in Korea. Type-A was found throughout most of South Korea and type-B was restricted to the mid-southeastern regions (Samchok, Yongdok, Chongsong and Pohang). But in the Tonghae population, both types were found. The level of mitochondrial DNA (mtDNA) sequence differences ranged from 0% to .0.8% among six populations of type-A, and 0 to 1.0% among 4 populations of type-B. However, sequence differences between type-A and type-B ranged from 5.4% to 6.6%, Using Kimura's two-parameter distance, the level of genetic sequence divergence between type-A and type-B was 6.7%. The Japanese R. rugosa was clustered very far from the Korean R. rugosa with 14.7%. In the neighbor-joining and UPGMA tree, all Korean samples were grouped, but subdivided into two types in 99% of the bootstrap iteration.

키워드

참고문헌

  1. J Mol Biol v.156 Complete sequence of bovine motochondrial DNA Anderson S;De Brujin MHL;Couisen AR;Eperon IC;Sanger F;Young IG
  2. J Mol Evol v.18 Mitochondrial DNA sequences of primates: tempo and mode of evolution Brown WM;Prager EM;Wang A;Wilson AC
  3. Proc Natl Acad Sci USA v.76 Rapid evolution of animal mitochondrial DNA Brown WM;George MJ;Wilson AC
  4. Mol Biol Evol v.13 Molecular divergence and phylogeny rates and patterns of cytochrome b evolution in cranes Carey K;King DG
  5. Evolution v.39 Confidence limits on phylogenetics: an analysis using the bootstrap Felsenstein J
  6. J Mol Biol v.203 Evolution of the cytochrome b gene Irwin DM;Kocher TD;Wilson AC
  7. J Mol Evol v.16 A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences Kimura M
  8. Proc Natl Acard Sci USA v.86 Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers Kocher TD;Thomas WK;Meyer A;Edwards SV;Paabo S;Villablanca FX;Wilson AC
  9. MEGA, Molecular Evolution Genetics Analysis(Version 1.01) Kumar S;Tamura K;Nei M
  10. J Mol Evol v.17 The use of restriction endonucleases to measure mitochondrial DNA sequence relatedness in natural populations. Ⅳ. Techniques and potential applications Lansman RA;Shade RO;Shapira JF;Avise JC
  11. Korean J Genet v.13 Genetic studies on Korean anurans: on the mitochondrial DNA differentiation in frogs of the genus Rana Lee HY;Park CS
  12. Korean J Genet v.14 The study on the macromitochondrial DNA using restriction enzymes in Korean anuran, Rana rugosa Lee HY;Park CS;Jung EK;Kim IS
  13. Korean J Genet v.19 Genetic differentiation between two species in the genus Rana of Korea Lee HY;Oh SJ;Yang DE;Kim YR;Yang SY
  14. Trends Ecol Evol v.9 Shortcomings of the cytochrome b gene as a molecular marker Meyer A
  15. Mol Phylogenet Evol v.8 Taxonomic status and phylogenetic relationships of some species of the genus Gammarus (Crustacea, Amphipoda) deduced from mitochondrial DNA sequences Meyran JC;Monnerot M;Taberlet P
  16. Ph. D. Thesis, Inha University Genetic Studies on the Korean Anurans (Amphibia, Anura): Chromosome and Mitochondrial DNA Analysis Park CS
  17. J Biol Chem v.260 The complete nucleotide sequence of the Xenopus laevis mitochondrial genome Roe BA;Ma D;Wilson RK;Wong JFH
  18. Science v.239 Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase Saiki RK;Delfand DH;Stooffel S;Scharf SJ;Highchi R;Horn GT;Mullis KB;Erlich HA
  19. Mol Biol Evol v.4 The neighbor-joining method: a new method for reconstructing phylogenetic trees Saitou N;Nei M
  20. Mol Biol Evol v.11 Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees Tamura K;Nei M
  21. Mol Phylogenet Evol v.4 MtDNA phylogeography of the California newt, Taricha torosa (Caudata, Salamandridae) Tan AM;Wake DB
  22. Zool Sci v.11 Extimation of Phylogenetic relationships among Japanese brown frogs from mitochondrial cytochrome b gene (Amphibia: Anura) Tanaka T;Matsui M;Takenaka O
  23. Biochem Syst Ecol v.24 Phylogenetic relationships of Japanese brown frogs (Rana: Ranidae) assessed by mitochondrial ctochrome b gene sequences Tanaka T;Matsui M;Takenaka O
  24. Zool Sci v.15 Phylogenetic relationships of brown frog from Taiwan and Japan assessed by mitochondrial cytochrome b gene sequences (Rana: Ranidae) Tanaka-Ueno T;Matsui M;Chen SL;Takenaka O;Ota H
  25. Zool Sci v.15 Phylogenetic relationship of brown frogs with 24 chromosomes from Far East Russia and Hokkaido assessed by mitochondrial cytochrome b gene sequences (Rana: Ranidae) Tanaka-Ueno T;Matsui M;Sato T;Takenata S;Takenaka O