• Title/Summary/Keyword: whole-genome sequence

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Strategies to Increase Domestic Lettuce Circulations through Improving Valuable End-User Traits (고부가가치 맞춤형 상추품종 개발을 통한 국내 상추유통 제고 전략)

  • Kim, Tae-Sung;Jang, Young-Hee;Hwang, Hee-Joong
    • Journal of Distribution Science
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    • v.16 no.8
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    • pp.63-68
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    • 2018
  • Purpose - Lettuce (Lactuca sativ L.) is one of the economically important vegetable crops, which worldwide market value is over 100 billion U.S. dollar. In Korea, about 89.7 kilo ton of lettuce was produced in 3400ha in 2016, recoded as No. 1 vegetable crop in domestic green house production. However, recently, domestic lettuce production and cultivation areas are all getting decreased. Thus, novel approaches are needed to be implemented to revive the production. Research design, data and methodology - In this review paper, we first prioritized the end-user traits which are imperative to positively stimulate the domestic lettuce market and discussed relevant genomics strategies. Especially, we assessed a possibility whether school meal program would be a potential niche market. Results - The genomics technologies, which become widely applied in the crop biotechnology since 2008 when next generation sequencing method was developed, may be a good solution in the crop improvement, efficiently gathering valuable information of agriculturally useful traits. Significantly, in lettuce, the high quality whole genome sequence, based on Lactuca sativa cv. Salinas, is publically available and this genomics platform, thus, would be implemented in lettuce breeding program to innovate relevant end-user traits both for the farmers and customers, including the disease resistance to the Fusarium wilt, productivity under hot weather conditions, various nutritional qualities and so forth. These improvements will boost domestic lettuce industries in the near future. Conclusions - Due to the nutritional distinctions comparing to the western style lettuces, domestic leaf lettuces could be one of the important vegetables in the school meal programs. To make it happen, we would better devise diverse recipes to make a salad with it, instead of only using as a wrap vegetable. Meanwhile, novel lettuce varieties need to be developed, which are favorable to the students and also easy to be handled with while processing. Overall, to achieve international competence in the lettuce industries, we need to create elite lettuce varieties that satisfies domestic farmers as well as customers, suitable to various niche markets, such as school meal program. Thus, efficient breeding programs using genomics approaches should be established in advance and careful monitoring on the preference of the related customers for a niche market be continued persistently.

First Report of Tomato Spotted Wilt Virus on Iris domestica in South Korea (약용작물 범부채에 발생한 Tomato Spotted Wilt Virus 국내 첫 보고)

  • Chung, Bong Nam;Yoon, Ju-Yeon;Cho, In-Sook
    • Research in Plant Disease
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    • v.27 no.1
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    • pp.32-37
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    • 2021
  • In May 2020, necrosis and necrotic ring patterns were observed on leaves of three of 140 Iris domestica plants in a demonstration garden in Wanju, Jeollabuk-do. Three symptomatic plants were found to be infected by tomato spotted wilt virus (TSWV). To analyze the whole genomic sequence of one TSWV isolate, 'Blackberry lily-kr1', L, M, and S genome segments were sequenced and analyzed by comparison of nucleotide sequences of the three segments with corresponding sequences of other TSWV isolates. 'Blackberry lily-kr1' isolate was most closely related to 'JJ' isolate (MF159046) or 'HJ' isolate (LC273305) in the L segment, and to 'JJ' isolate (MF159058 and KY021439) in the M and S segments, respectively. Phylogenetic analysis by Maximum likelihood method using MEGA X program with 'Blackberry lily-kr1' isolate showed high relationship with 'JJ' pepper isolate or 'HJ' Humulus japonicas isolate in the all three segment. Necrosis and double ring patterns on leaves were formed in the glasshouse after inoculation of healthy I. domestica plants with sap of 'Blackberry lily-kr1'-infected Nicotiana rustica plants. This result suggests that I. domestica plants showing necrotic ring patterns in the open field are caused by TSWV infection. This is the first report of TSWV infection of I. domestica in Korea.

Design and Implementation of Memory-Centric Computing System for Big Data Analysis

  • Jung, Byung-Kwon
    • Journal of the Korea Society of Computer and Information
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    • v.27 no.7
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    • pp.1-7
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    • 2022
  • Recently, as the use of applications such as big data programs and machine learning programs that are driven while generating large amounts of data in the program itself becomes common, the existing main memory alone lacks memory, making it difficult to execute the program quickly. In particular, the need to derive results more quickly has emerged in a situation where it is necessary to analyze whether the entire sequence is genetically altered due to the outbreak of the coronavirus. As a result of measuring performance by applying large-capacity data to a computing system equipped with a self-developed memory pool MOCA host adapter instead of processing large-capacity data from an existing SSD, performance improved by 16% compared to the existing SSD system. In addition, in various other benchmark tests, IO performance was 92.8%, 80.6%, and 32.8% faster than SSD in computing systems equipped with memory pool MOCA host adapters such as SortSampleBam, ApplyBQSR, and GatherBamFiles by task of workflow. When analyzing large amounts of data, such as electrical dielectric pipeline analysis, it is judged that the measurement delay occurring at runtime can be reduced in the computing system equipped with the memory pool MOCA host adapter developed in this research.