• 제목/요약/키워드: virus variation

검색결과 124건 처리시간 0.027초

컴퓨터 상 분석을 이용한 HBsAg-screening용 Rapid Immunochromatographic Assay Kit의 정량적 측정법 (Quantitative Method of Rapid Immunochromatographic Assay Kit for HBsAg-screening using Computer Image Analysis)

  • 신형순;허태련
    • KSBB Journal
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    • 제15권3호
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    • pp.243-246
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    • 2000
  • B형간염 바이러스 연구에 관한 최근의 주제는 혈중 B형간염 표면항원농도(HBsAg)를 예후 판정의 지표로 활용하는 것이다, 본 연구에서는 B형간염에 대한 자가진단을 목적으로 하여 컴퓨 터 상 분석 기법을 사용하는 HBsAg에 대한 정량적 면역크로마 토그래피 측정법을 개발하였다. 본 방법을 사용하였을 때 측정 된 integrated optical density(IOD)은 2~200 ng/mL의 범위 내에 서 표준 HBsAg 농도의 log값에 비례하여 증가하였데, ELISA 측정법은 0.1~100 ng/mL의 범위 내에서 표준 HBsAg 농도의 log값에 비례하여 증가하였다. 3개의 혈청 겸제를 가지고 두 가 지의 측정법으로 각각 시험하여 표준곡선에 대입하였을 때 동일 한 농도를 나타내 었는데 그 값이 각각 9,000, 7,000, 4,000 ng/mL 이었다. 또한 컴퓨터 상 분석 기법을 사용하는 HBsAg에 대한 정량적 면역크로마토그래피 측정법으로 동일 겸체를 5회 반복 시험하였을 때 측정된 IOD값이 재현성이 있었으며, 변이계수가 1.38 ~ 6.30% 이내였다.

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고추 주요 재래종 선발계통의 생육 및 과실 특성 (Growth and Fruit Characteristics of Selections from Local Cultivars of Pepper)

  • 권영석;김병수;정호정
    • Current Research on Agriculture and Life Sciences
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    • 제10권
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    • pp.117-123
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    • 1992
  • 우수한 재래종(在來種)에 더뎅이병과 역병 저항성(抵抗性) 인자(因子)를 도입(導入)하기 위한품질친(品質親)을 선발(選拔)하기 위하여 '칼미초'에서 선발한 20계통과 '풍각초'에서 선발한24계통을 공시하여 본(本) 대학(大學) 시험포양(試驗圃楊)에 재배(栽培)하여 개화소요일수(開花所要日數), 초장 및 과실특성을 조사(調査)하였다. '칼미초'와 '풍각초' 선발 계통(系統)들은 모두 개화소요일수(開花所要日數)가 많은 만생종(晩生種)이었고, '칼미초' 계통들이 '풍각초' 보다 변이복(變異福)이 더 크게 나타났다. '칼미초'의 일부 계통(系統)들은 초세(草勢)가 강하고 당도(糖度)가 높으며 포양(圃楊)에서 바이러스에 저항성(抵抗性)으로 나타났다. '풍각초'의 일부 계통(系統)은 과종(果種)이 무거운 대과종(大果種)이었으며 과피가 두텁고 제분율(製粉率)이 높게 나타났다. 이상(以上)의 결과(結果)로서 더뎅이병과 역병에 저항성(抵抗性) 품종(品種)을 육성하기 위한 여고잡육종에서 반복친으로 사용할 수 있는 재료(材料)로 '칼미초' 계통 6, 9, 14, 18과 '풍각초' 계통 14, 16, 18등 7계통(系統)을 선발(選拔)하였다.

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Recent viral pathogen in acute gastroenteritis: a retrospective study at a tertiary hospital for 1 year

  • Jin, Hye Il;Lee, Yoo Mi;Choi, You Jin;Jeong, Su Jin
    • Clinical and Experimental Pediatrics
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    • 제59권3호
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    • pp.120-125
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    • 2016
  • Purpose: Viral gastroenteritis among children is mainly caused by rotavirus, norovirus, astrovirus, or adenovirus strains. However, changing socioeconomic conditions and a rotavirus vaccination program may be affecting the prevalence of these viral infections. Therefore, we aimed to elucidate the season-specific trends in viral infections for facilitating prophylaxis and surveillance in our region. Methods: We evaluated 345 pediatric patients (203 males, 142 females; age, 1 month to 16 years) who visited the CHA Bundang Medical Center because of gastroenteric symptoms between June 2014 and May 2015. The specimens were simultaneously tested for norovirus, rotavirus, astrovirus, and adenovirus via multiplex reverse transcription polymerase chain reaction. Clinical characteristics of patients were analyzed retrospectively. Results: The most common virus was norovirus, followed by rotavirus, adenovirus, and astrovirus. Of all viral infections, 45.2% occurred mainly between 6 and 24 months of age; in particular, norovirus infection mostly occurred in all age groups except those below 6 months of age, when rotavirus was most prevalent. In addition, seasonal variation was observed, such as norovirus infection from December to February, rotavirus infection from February to April, and adenovirus infection from July to October. Conclusion: Our results showed that the most common cause of acute pediatric viral gastroenteritis had changed from rotavirus to norovirus in our patients, because of effective rotaviral vaccination. We recommend the management of food and personal hygiene in accordance with age or seasons as well as active vaccination for preventing viral gastroenteritis.

Evaluation of Human Papilloma Virus Infection in Patients with Esophageal Squamous Cell Carcinoma from the Caspian Sea Area, North of Iran

  • Yahyapour, Yousef;Shamsi-Shahrabadi, Mahmoud;Mahmoudi, Mahmoud;Siadati, Sepideh;Shahryar, Shefaei Shahryar;Shokri-Shirvani, Javad;Mollaei, Hamid;Monavari, Seyed Hamid Reza
    • Asian Pacific Journal of Cancer Prevention
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    • 제13권4호
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    • pp.1261-1266
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    • 2012
  • Introduction: HPV has been found repeatedly in esophageal squamous cell carcinoma (ESCC) tissues. However, reported detection rates of HPV DNA in these tumors have varied markedly. Differences in detection methods, sample types, and geographic regions of sample origin have been suggested as potential causes of variation. We have reported that infection of HPV DNA in ESCC tumors depends on anatomical sites of esophagus of the patients from Mazandaran, north of Iran. Materials and Methods: HPV DNA was examined in 46 upper, 69 middle and 62 lower third anatomical sites of esophageal squamous cell carcinoma specimens collected from Mazandaran province in north Iran, near the Caspian Littoral as a region with high incidence of ESCC. HPV L1 DNA was detected using Qualitative Real time PCR and MY09/MY11 primers. Results: 28.3% of upper, 29% of middle and 25.8% of lower third of ESCC samples were positive for HPV DNA. 13.6% for males and 14.1% for females were HPV positive in all samples. Conclusions: HPV infection is about one third of ESCC in this area. Findings in this study increase the possibility that HPV is involved in esophageal carcinogenesis. Further investigation with a larger sample size is necessary.

한국에 산재하는 사람 Caliciviruses의 다양한 유전자군: 1987-1994년 (Genotypic Variations among Human Caliciviruses in Korea: 1987-1994)

  • 남기범;김지애;양재명;김경희
    • 대한바이러스학회지
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    • 제27권2호
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    • pp.185-195
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    • 1997
  • Sequence comparison of the RNA-dependent RNA polymerase of human caliciviruses (HuCVs) from Korean children with gastroenteritis revealed significant genetic variation among them. cDNA clones were produced from the HuCVs collected from pediatric population during a period of 1987-1994. The application of reverse transcription-polymerase chain reaction (RT-PCR) using primers directed to the RNA-dependent RNA polymerase region within ORF1 of Norwalk virus (NV) showed that 13.7% of HuCVs yielded PCR products of similar size to the NV prototype, NV8FIIa/68/US, with exceptions of HuCV 185/87/Korea and HuCV 1115/90/Korea. Computer analyses showed that the PCR products had a continuous protein encoding frame on the positive strand, and contained GLPSG and YGDD amino acid motifs at the predicted distance from primers. Alignment of the amino acid sequences of HuCVs with previously published sequences for Snow Mountain agent (SMA), NV, and Sapporo/82/Japan indicated that these strains can be divided into four major genogroups. There were 10 (45%) SMA-like CVs, one (4.5%) NV-like HuCVs, two (9%) Sapporo-like HuCVs, and nine (41%) unidentified HuCVs. This fourth genogroup should be investigated further. HuCV 185/87/Korea and HuCV 1115/90/Korea, Sapporo-like CVs, were genetically distinct from previously characterized HuCVs and more closely related to known animal CVs. One of the animal CV-like strain, HuCV 185/87/Korea, showed nucleotide and amino acid homology of only 67% and 73% with the prototype Sapporo/82/Japan. Further characterization of animal and human CV genomes and studies of possible cross-transmission of CVs from animals to humans are likely to be beneficial in understanding the epidemiology of HuCVs.

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Effects of Insect Hormones on the Replication of Nucleopolyhedrovirus

  • Zhang, Zhi-Fang;Yi, Yong-Zhu;Xiao, Qing-Li;He, Jia-Lu;Zhou, Ya-Jing;Zhang, Yuan-Xing
    • International Journal of Industrial Entomology and Biomaterials
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    • 제4권2호
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    • pp.137-141
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    • 2002
  • An experimental study was undertaken to quantify the effects of insect hormones on the replication of nucleopolyhedrovirus (NPV). The results demonstrated that TCID/ sub 50/ at 72 h post-infection (hpi) rose systematically from 0.55$\times$10$^{8}$ /m1, for untreated cells, up to 1.67$\times$10$^{8}$ / ml at 3$\mu$g/ml, then dropped down to 1.45$\times$10$^{8}$ /m1 at 4 $\mu$g/ml, by adding ecdysone to the culture medium for Bm-N cells infected with a wild-type Bambyx mori. nucleopolyhedrovirus (BmNPV). The optimum enhancement of about 3 times on budded virus (BV) titer at 72 hpi was given at 3 $\mu$g/ml of ecdysone. While the polyhedra number had no obvious variation within the range of concentrations from 0 to 4 $\mu$g/ml. By addition of juvenile hormone analogue (JHA) into the media with this concentration range, the BmNPV TCID/ sub 50/ and polyhedra number at 72 hpi did not show significant changes. Also, the addition of either 3 $\mu$g/ml of ecdysone or 3 $\mu$g/ml of JHA to the culture media did not appear to affect the TCID/ sub 50/ and polyhedra number significantly in infected Sf-21 cells with the autographa californica nucleopolyhedrovirus (AcMNPV).

HPV, Cervical Cancer and Pap Test Related Knowledge Among a Sample of Female Dental Students in India

  • Doshi, Dolar;Reddy, B Srikanth;Karunakar, P;Deshpande, Kopparesh
    • Asian Pacific Journal of Cancer Prevention
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    • 제16권13호
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    • pp.5415-5420
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    • 2015
  • Background: The present study was designed to ascertain knowledge about HPV, cervical cancer (CC) and the Pap test among female dental students of Panineeya Institute of Dental Sciences and Hospital, Hyderabad, India. Materials and Methods: A self-administered questionnaire covering demographic details, knowledge relating to human papilloma virus (HPV) (8 items), cervical cancer (4 items) and the Pap smear (6 items) was employed. Responses were coded as "True, False and Don't Know". Mean and standard deviation (SD) for correct answers and levels of knowledge were determined. Results: Based on the year of study, significant differences in knowledge of HPV werenoted for questions on symptoms (p=0.01); transmission from asymptomatic partners (p=0.002); treatment with antibiotics (p=0.002); start of sexual activity (p=0.004); and recommended age for HPV vaccination (p=0.01). For knowledge regarding CC, significance was observed for the age group being affected (p=0.008) and symptoms of the disease in early stages (p=0.001). Indications for Pap smear tests like symptoms' of vaginal discharge (p=0.002), marital status (p=0.01) and women with children (p=0.02) had significant difference based on the year of study. Based on religion, transmission of HPV via pregnancy, HPV related diseases except CC and preventive measures except condom use and oral contraceptives showed significant differences. However, significant variation with religion was observed only for two preventive measures of CC (Pap test; p=0.004) and HPV vaccination (p=0.003). Likewise, only the frequency of Pap test showed a significant difference for religion (p=0.001). Conclusions: This study emphasizes the lack of awareness with regard to HPV, CC and screening with pap smear even among health professionals. Hence, regular health campaigns are essential to reduce the disease burden.

Detection and Characterization of Enteroviral RNA in Paraffin-embedded Heart Tissues from Patients with Dilated Cardiomyopathy

  • Chung, Kyung-Won;Nam, Jung-Hyun;Lee, Ho-Jung;Hong, Hae-Nam;Cho, Young-Keol;Chu, Chul-Hyun;Kim, Yoo-Kyum
    • 대한바이러스학회지
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    • 제30권1호
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    • pp.29-37
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    • 2000
  • The aim of this study was to investigate viral etiology in dilated cardiomyopathy (DCM) by polymerase chain reaction (PCR) or nested reverse transcription PCR (RT-PCR), and characterize the enteroviral RNA presented in the clinical specimens. Twenty-eight paraffin-embedded heart tissue samples were assayed to detect cytomegalovirus, herpes simplex virus type 1, type 2, parvovirus, adenovirus, and enterovirus (EV) with each specific primer. Of these 28 patients (mean age: 27, M: 24, F: 4), 26 were histologically diagnosed as DCM and 2 as myocardial infarction (MI). Nested RT-PCR detected enteroviral RNA in 7 (26.9%) of 26 patients with DCM, and none of patients with MI. And none of DNA viruses tested were detected from the samples. Amplified products were also genotyped by single-strand conformation polymorphism (SSCP). Three subtypes can be differentiated from 7 clinical specimens. Furthermore, direct sequence analysis was performed to determine whether genetic variation of EV is present in the explanted heart tissues from patients with DCM. Although most of the sequences among the wild isolates have the greatest similarity to those of coxsackievirus B3, there are specific regions of variable sequences (no 490 - no 510). The data suggest that enterovirus may be a major viral pathogen for the DCM in Korea and nucleotide sequence data indicate that coxsackievirus B3 may be a leading etiologic agent of DCM.

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경남 북부지역 위축자돈에 대한 질병조사 (Investigation of atrophic piglets diseases in northern area of the Gyeongnam province, Korea)

  • 김형수;성민호;한권식;박정용;신유경;정명호;박동엽;고필옥
    • 한국동물위생학회지
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    • 제38권1호
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    • pp.1-7
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    • 2015
  • This study was investigated to diagnose pathogenic organisms of atrophic piglets in northern area of the Gyeongnam province, Korea. Samples such as feces, blood and necropsy specimens of 42 atrophic piglets (${\leq}10$ weeks old) were taken from May to December 2013 for this survey. Samples were examined by reverse transcriptase-polymerase chain reaction (RT-PCR) assay and bacteria isolation for detection of pathogenic agents. 93 pathogens were isolated from 42 samples can be classified into ll groups. We identified bacterial agents in 56 cases (60.2%) and viral agents in 31 cases (33.3%). However, 6 cases (6.5%) were undetected. Among these pathogens, the most prevalent disease were porcine reproductive and respiratory syndrome (PRRS) in 22 cases (23.7%). The major diseases were Colibacillosis in 15 cases (16.1%), Glasser's disease in 12 cases (12.9%), and porcine epidemic disease (PED) in 9 cases (9.7%). Mixed infections were accounted for 77.8% of atrophic piglets. In particular, the rate of mixed infections with PRRS virus showed the highest frequency (71.4%). In addition, there is a seasonal variation. Viral pathogens were dominantly detected in winter, but in the rest of the season bacterial agents were mainly detected. Gastrointestinal diseases occurred mainly in the pre-weaning piglets, the respiratory diseases and wasting diseases occurred mainly in the post-weaning piglets.

Identification of Polymorphisms in CYP2E1 Gene and Association Analysis among Chronic HBV Patients

  • Chun, Ji-Yong;Park, Byung-Lae;Cheong, Hyun-Sub;Kim, Jason-Y.;Park, Tae-Joon;Lee, Jin-Sol;Lee, Hyo-Suk;Kim, Yoon-Jun;Shin, Hyoung-Doo
    • Genomics & Informatics
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    • 제7권4호
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    • pp.187-194
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    • 2009
  • Cytochrome P450 2E1 (CYP2E1) is a member of the cytochrome P450 superfamily, and it is a key enzyme responsible for the metabolic activation of many smallmolecular-weight compounds such as alcohol, which is classified as a human carcinogen. In this study, we identified 19 single nucleotide polymorphisms (SNPs) in CYP2E1 in Korean population. In these SNPs, we examined possible genetic association of CYP2E1 polymorphisms with HBV clearance and the risk of hepatocellular carcinoma (HCC). Five common polymorphic sites were selected, CYP2E1 polymorphisms at rs381-3867, rs3813870, rs2070673, rs2515641 and rs2480257, considering their allele frequencies, haplotype-tagging status and LDs for genotyping in larger-scale subjects (n=1,092). Statistical analysis demonstrated that CYP2E1 polymorphisms and haplotypes show no significant association with HBV clearance, HCC occurrence and onset age of HCC (p>0.05). Previous studies, however, have shown contradictory findings on associations of CYP2E1 polymorphisms with CYP2E1 activities and HCC risk. Comparing the contrasting results of previous researches suggest that CYP2E1 polymorphism is associated with CYP2E1 activity induced by ethanol, but is not directly associated with HCC risk. CYP2E1 variation/haploype information identified in this study will provide valuable information for future studies on CYP2E1.