• Title/Summary/Keyword: variant detection

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Robust Lane Detection Method Under Severe Environment (악 조건 환경에서의 강건한 차선 인식 방법)

  • Lim, Dong-Hyeog;Tran, Trung-Thien;Cho, Sang-Bock
    • Journal of the Institute of Electronics and Information Engineers
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    • v.50 no.5
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    • pp.224-230
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    • 2013
  • Lane boundary detection plays a key role in the driver assistance system. This study proposes a robust method for detecting lane boundary in severe environment. First, a horizontal line detects form the original image using improved Vertical Mean Distribution Method (iVMD) and the sub-region image which is under the horizontal line, is determined. Second, we extract the lane marking from the sub-region image using Canny edge detector. Finally, K-means clustering algorithm classifi left and right lane cluster under variant illumination, cracked road, complex lane marking and passing traffic. Experimental results show that the proposed method satisfie the real-time and efficient requirement of the intelligent transportation system.

False Alarm Minimization Technology using SVM in Intrusion Prevention System (SVM을 이용한 침입방지시스템 오경보 최소화 기법)

  • Kim Gill-Han;Lee Hyung-Woo
    • Journal of Internet Computing and Services
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    • v.7 no.3
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    • pp.119-132
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    • 2006
  • The network based security techniques well-known until now have week points to be passive in attacks and susceptible to roundabout attacks so that the misuse detection based intrusion prevention system which enables positive correspondence to the attacks of inline mode are used widely. But because the Misuse detection based Intrusion prevention system is proportional to the detection rules, it causes excessive false alarm and is linked to wrong correspondence which prevents the regular network flow and is insufficient to detect transformed attacks, This study suggests an Intrusion prevention system which uses Support Vector machines(hereinafter referred to as SVM) as one of rule based Intrusion prevention system and Anomaly System in order to supplement these problems, When this compared with existing intrusion prevention system, show performance result that improve about 20% and could through intrusion prevention system that propose false positive minimize and know that can detect effectively about new variant attack.

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Accelerating next generation sequencing data analysis: an evaluation of optimized best practices for Genome Analysis Toolkit algorithms

  • Franke, Karl R.;Crowgey, Erin L.
    • Genomics & Informatics
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    • v.18 no.1
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    • pp.10.1-10.9
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    • 2020
  • Advancements in next generation sequencing (NGS) technologies have significantly increased the translational use of genomics data in the medical field as well as the demand for computational infrastructure capable processing that data. To enhance the current understanding of software and hardware used to compute large scale human genomic datasets (NGS), the performance and accuracy of optimized versions of GATK algorithms, including Parabricks and Sentieon, were compared to the results of the original application (GATK V4.1.0, Intel x86 CPUs). Parabricks was able to process a 50× whole-genome sequencing library in under 3 h and Sentieon finished in under 8 h, whereas GATK v4.1.0 needed nearly 24 h. These results were achieved while maintaining greater than 99% accuracy and precision compared to stock GATK. Sentieon's somatic pipeline achieved similar results greater than 99%. Additionally, the IBM POWER9 CPU performed well on bioinformatic workloads when tested with 10 different tools for alignment/mapping.

Reduced Complexity Signal Detection for OFDM Systems with Transmit Diversity

  • Kim, Jae-Kwon;Heath Jr. Robert W.;Powers Edward J.
    • Journal of Communications and Networks
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    • v.9 no.1
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    • pp.75-83
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    • 2007
  • Orthogonal frequency division multiplexing (OFDM) systems with multiple transmit antennas can exploit space-time block coding on each subchannel for reliable data transmission. Spacetime coded OFDM systems, however, are very sensitive to time variant channels because the channels need to be static over multiple OFDM symbol periods. In this paper, we propose to mitigate the channel variations in the frequency domain using a linear filter in the frequency domain that exploits the sparse structure of the system matrix in the frequency domain. Our approach has reduced complexity compared with alternative approaches based on time domain block-linear filters. Simulation results demonstrate that our proposed frequency domain block-linear filter reduces computational complexity by more than a factor of ten at the cost of small performance degradation, compared with a time domain block-linear filter.

Detection of Anormalies on the Power Line using the Instantaneous Frequencies (순간주파수를 이용한 전력선 신호의 이상현상검출)

  • Iem, Byeong-Gwan
    • The Transactions of the Korean Institute of Electrical Engineers A
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    • v.55 no.12
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    • pp.544-548
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    • 2006
  • The instantaneous frequency gives a frequency value at a time instance. Thus, it is natural to use the instantaneous frequency for detecting disturbances of voltage signal in power line. Various instantaneous frequency estimators are introduced. By applying to different types of disturbed signals, we show the estimators' ability to classify flickers. Also, the computational costs are compared between different instantaneous frequency estimators. The Prony's method (PRONY) and the modified covariance method (MCOV) need relatively smaller amount of calculation than the Teaser-Kaiser energy operator based estimator (DESA II). For an AM-FM modulated signal, the tracking performance of different instantaneous frequency estimators is also compared. Through simulation, it is shown that MCOV produces less variant frequency estimation values than DESA II and PRONY method.

Deletion or Duplication Syndromes of Chromosome 22: Review

  • Kyung Ran Jun
    • Journal of Interdisciplinary Genomics
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    • v.6 no.1
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    • pp.1-5
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    • 2024
  • Chromosome 22 is an acrocentric chromosome containing 500-600 genes, representing 1.5%-2% of the total DNA in cells. It was the first human chromosome to be fully sequenced by the Human Genome Project. Several syndromes involving the partial deletion or duplication of chromosome 22 are well descibed, including 22q11.2 deletion syndrome, 22q11.2 duplication syndrome, 22q11.2 distal deletion syndrome, Phelan-McDermid syndrome caused by a 22q13 deletion or pathogenic variant in SHANK3, and cat-eye syndrome caused by a 22 pter-q11 duplication. This review aims to provide concise information on the clinical characteristics of these syndromes. In particular, the similarities in features among these syndromes, genetic basis, and standard detection techniques are described, providing guidance for diagnosis and genetic counselling.

Function partitioning methods for malware variant similarity comparison (변종 악성코드 유사도 비교를 위한 코드영역의 함수 분할 방법)

  • Park, Chan-Kyu;Kim, Hyong-Shik;Lee, Tae Jin;Ryou, Jae-Cheol
    • Journal of the Korea Institute of Information Security & Cryptology
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    • v.25 no.2
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    • pp.321-330
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    • 2015
  • There have been found many modified malwares which could avoid detection simply by replacing a sequence of characters or a part of code. Since the existing anti-virus program performs signature-based analysis, it is difficult to detect a malware which is slightly different from the well-known malware. This paper suggests a method of detecting modified malwares by extending a hash-value based code comparison. We generated hash values for individual functions and individual code blocks as well as the whole code, and thus use those values to find whether a pair of codes are similar in a certain degree. We also eliminated some numeric data such as constant and address before generating hash values to avoid incorrectness incurred from them. We found that the suggested method could effectively find inherent similarity between original malware and its derived ones.

Circulating Tumor DNA in a Breast Cancer Patient's Plasma Represents Driver Alterations in the Tumor Tissue

  • Lee, Jieun;Cho, Sung-Min;Kim, Min Sung;Lee, Sug Hyung;Chung, Yeun-Jun;Jung, Seung-Hyun
    • Genomics & Informatics
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    • v.15 no.1
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    • pp.48-50
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    • 2017
  • Tumor tissues from biopsies or surgery are major sources for the next generation sequencing (NGS) study, but these procedures are invasive and have limitation to overcome intratumor heterogeneity. Recent studies have shown that driver alterations in tumor tissues can be detected by liquid biopsy which is a less invasive technique capable of both capturing the tumor heterogeneity and overcoming the difficulty in tissue sampling. However, it is still unclear whether the driver alterations in liquid biopsy can be detected by targeted NGS and how those related to the tissue biopsy. In this study, we performed whole-exome sequencing for a breast cancer tissue and identified PTEN p.H259fs*7 frameshift mutation. In the plasma DNA (liquid biopsy) analysis by targeted NGS, the same variant initially identified in the tumor tissue was also detected with low variant allele frequency. This mutation was subsequently validated by digital polymerase chain reaction in liquid biopsy. Our result confirm that driver alterations identified in the tumor tissue were detected in liquid biopsy by targeted NGS as well, and suggest that a higher depth of sequencing coverage is needed for detection of genomic alterations in a liquid biopsy.

Diffuse Sclerosing Variant of Papillary Thyroid Carcinoma in a Child: A Case Report (소아의 미만성 경화 변종 갑상선 유두암: 증례 보고)

  • Seung Hee Byun;Sun Kyoung You;Seong Su Kang;Kyung Sook Shin;Jeong Eun Lee
    • Journal of the Korean Society of Radiology
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    • v.81 no.5
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    • pp.1250-1254
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    • 2020
  • The diffuse sclerosing variant of papillary thyroid carcinoma (DSPTC) is uncommon. Herein, we report a rare case of DSPTC in a 9-year-old girl who initially presented with a painless diffuse goiter. Thyroid peroxidase antibody testing yielded positive results, and the initial clinical diagnosis was Hashimoto's thyroiditis. However, thyroid ultrasonography revealed characteristic findings of DSPTC, which was confirmed through the postoperative histopathological diagnosis. Although thyroid cancers are rare in the pediatric population, DSPTC should be included in the differential diagnosis of goiter in these patients. Moreover, ultrasonography may prevent a diagnostic delay and facilitate the detection of a concomitant malignancy.

Next Generation Sequencing and Bioinformatics (차세대 염기서열 분석기법과 생물정보학)

  • Kim, Ki-Bong
    • Journal of Life Science
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    • v.25 no.3
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    • pp.357-367
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    • 2015
  • With the ongoing development of next-generation sequencing (NGS) platforms and advancements in the latest bioinformatics tools at an unprecedented pace, the ultimate goal of sequencing the human genome for less than $1,000 can be feasible in the near future. The rapid technological advances in NGS have brought about increasing demands for statistical methods and bioinformatics tools for the analysis and management of NGS data. Even in the early stages of the commercial availability of NGS platforms, a large number of applications or tools already existed for analyzing, interpreting, and visualizing NGS data. However, the availability of this plethora of NGS data presents a significant challenge for storage, analyses, and data management. Intrinsically, the analysis of NGS data includes the alignment of sequence reads to a reference, base-calling, and/or polymorphism detection, de novo assembly from paired or unpaired reads, structural variant detection, and genome browsing. While the NGS technologies have allowed a massive increase in available raw sequence data, a number of new informatics challenges and difficulties must be addressed to improve the current state and fulfill the promise of genome research. This review aims to provide an overview of major NGS technologies and bioinformatics tools for NGS data analyses.