• Title/Summary/Keyword: tree species classification

Search Result 166, Processing Time 0.03 seconds

Classification of Archaebacteria and Bacteria using a Gene Content Tree Approach (Gene Content Tree를 이용한 Archaebacteria와 Bacteria 분류)

  • 이동근;김수호;이상현;김철민;김상진;이재화
    • KSBB Journal
    • /
    • v.18 no.1
    • /
    • pp.39-44
    • /
    • 2003
  • A Gene content phylogenetic tree and a 16s rRNA based phylogenetic tree were compared for 33 whole-genome sequenced procaryotes, neighbor joining and bootstrap methods (n=1,000). Ratio of conserved COG (clusters of orthologous groups of proteins) to orthologs revealed that they were within the range of 4.60% (Mezorhizobium loti) or 56.57% (Mycopiasma genitalium). This meant that the ratio was diverse among analyzed procaryotes and indicated the possibility of searching for useful genes. Over 20% of orthologs were independent among the same species. The gene content tree and the 16s rDNA tree showed coincidence and discordance in Archaeabacteria, Proteobacteria and Firmicutes. This might have resulted from non-conservative genes in the gene content phylogenetic tree and horizontal gene transfer. The COG based gene content tree could be regarded as a midway phylogeny based on biochemical tests and nucleotide sequences.

Possibility of establishment of a tree nursery at Saemangeum Reclaimed Land and Classification of 36 Landscape Trees Based on Salt Tolerance (새만금 간척지에서 36종 조경수의 양묘 가능성 검증과 내염성 분류)

  • Lee, Kyung Joon;Song, Jae Do;Lee, Kyu Hwa
    • Journal of Korean Society of Forest Science
    • /
    • v.104 no.4
    • /
    • pp.564-577
    • /
    • 2015
  • The objectives of this study were to investigate the possibility of establishing a tree nursery at Saemangeum reclaimed land and to classify landscape trees based on the salt tolerance. A tree nursery (2.0 ha) was made in Gunsan Okgu area in 2012 with underground drain lines on the reclaimed land established in 2010. Salt content of the nursery soil within the 60 cm depth in 2013 was 5.13 dS/m and 8.20 dS/m for the pre-desalinated and non-desalinated lands, respectively. Thirty-six woody plant species (22 tree species and 14 shrub species at ages of 1 to 4) with a total of 3,943 individuals were planted in early April, 2013 and their growth performance was monitored until September of the same year. The average survival rate of the transplanted plants was 71.4% in late September, suggesting the high possibility of establishing a tree nursery at the reclaimed land. Based on the survival rate and tree vigor (amount of healthy leaves and crown development), the following 17 species with some salt tolerance were classified into three groups: "salt tolerant group" (3 species, Tamarix chinensis, Cudrania tricuspidata, Ilex serrata), "recommended group" (5 species, Pinus thunbergii, Albizia julibrissin, Ligustrum obtusifolium, Rosa rugosa, Pleioblatus pygmaeus), "plantable group" (9 species, Zelkova serrata, Hibiscus syriacus, Elaeagnus umbellata, Sorbus alnifolia, Sophora japonica, Metasequoia glyptostroboides, Quercus acutissima, Ulmus parvifolia, Robinia pseudoacacia). Seven tree species that had been adapted to the reclaimed land for three to four years before being transplanted to new reclaimed land in Gunsan Okgu area showed average survival rate of 98%, suggesting that pre-conditioned trees would survive well in the reclaimed land.

Molecular phylogenie location of the Plagiorchis muris(Digenea, Plagiorchiidae) based on sequences of partial 28S D1 rDNA and mitochondrial cytochrome C oxidase subunit I

  • Lee, Soo-Ung;Huh, Sun;Sohn, Woon-Mok
    • Parasites, Hosts and Diseases
    • /
    • v.42 no.2
    • /
    • pp.71-75
    • /
    • 2004
  • To determine the molecular phylogenie location of Plagiorchis muris, 28S D1 ribosomal DNA (rDNA) and mitochondrial cytochrome C oxidase subunit I (mtCOI) were sequenced and compared with other trematodes in the family Plagiorchiidae. The 28S D1 tree of P. muris was found to be closely related to those of P. elegans and other Plagiorchis species. And, the mtCOI tree also showed that P. muris is in a separate clade with genus Glypthelmins. These results support a phylogenie relationship between members of the Plagiorchiidae, as suggested by morphologic features.

Vegetation Structure and Ecological Restoration Model of Quercus mongolica Community (신갈나무림의 식생구조와 생태적 복원모델)

  • Lee, Mi-Jeong;Song, Hokyung
    • Journal of the Korean Society of Environmental Restoration Technology
    • /
    • v.14 no.1
    • /
    • pp.57-65
    • /
    • 2011
  • The composition of species for each community of Quercus by vegetation and soil survey, the community classification by TWINSPAN, the structural characteristics of communities were used and analyzed during the period of 2000~2004 for Quercus mongolica forest. And the resulting suggestions for a subsequent planting model for forest are as follows. The Quercus mongolica community had the highest importance value for Quercus mongolica followed sequentially by Acer pseudosieboldianum, Acer mono, Rhododendron schlippenbachii, Tilia amurensis, Fraxinus rhynchophylla, and Fraxinus sieboldiana. As a result of suggesting a planting modeling for the Quercus mongolica communities in the areas with the warmth index of both $60.90{\sim}79.79^{\circ}C$ and $53.96{\sim}64.82^{\circ}C$, Quercus mongolica was absolutely dominant in case of the subtree layer for the accompaniment species of distribution in the planting modeling by tree layer in the two areas depending on the warmth index, while there were distinct differences shown in case of the lower tree layer. While Acer pseudosieboldianum, Tilia amurensis, Fraxinus rhynchophylla, Sorbus alnifolia, Acer mono, etc. were appeared in the subtree layer for the areas with the warmth index of $60.90{\sim}79.79^{\circ}C$. Cornus controversa, Quercus mongolica, Fraxinus sieboldiana, etc. were many appeared in the subtree layer for the areas with the warmth index of $53.96{\sim}64.82^{\circ}C$. And, when we made ecological Quercus mongolica community, subtree layer planting is different by warmth index.

Ecological Studies on Several Forest Communities in Kwangnung. A Study of the Site Index and the ground vegetation of Larch (광릉삼림의 생태학적 연구 낙엽송의 Site Index와 임상식생에 관하여)

  • 차종환
    • Journal of Plant Biology
    • /
    • v.9 no.1_2
    • /
    • pp.7-16
    • /
    • 1966
  • In order to determine the factors related to site quality, 13 areas of Larch growing in the Kwangung and its vicinity forest as sample plots, were examined. Sample plots included various site classes as well as age classes. Three were divided into two groups (major and minor trees). Average height of dominant trees was determined through messurement of 5 to 6 dominant tree in each sample plots. Average height of dominant 30 year-old trees was the basis for site index. A Standard Yield Table for the larch produced in Kwangnung forest was made by various data, which included age class 5, ranging from 10 to 45 years. The relationship of the height of the trees, the site conditions, and ground vegetation are investigated in this paper. The site indexes of 40 forest class age in 28-B and 28-G forest classes of the larch associations for ground vegetation had comparatively rarge differences due to the sampled areas. The relation of the direction of forest communities to the height and the diameter of the tree shwoed that its communiteis of northest and northwest parts appeared higher valueof the height and the diameter. The diameter and the height of trees were closely realted to each other. The samller the occupied area per tree and the smaller the average distance among trees, the more density was increased. The larger the density was the lower height of the trees. In the ground vegetation of the larch communities, there seems to be a definite correlation between the height of trees and the occupied area per tree or the average distance among the trees. The height of trees and site index of two larch communities were as follow: 28-B forest class site index 20.8, height 24.0m, 28-G forest class site index 18.4, height 20.9m. The ground layer was analyzed by the method of Quadrat(20/20sq. cm) with an interval of 1M. It set up 40 Quadrats of the larch communiteis. The community structure of the ground vegetation of two larch was analyzed, and important value was calculated and then evaluated. The ground vegetation under the larch had developed Burmannii Beauv stratal society below the 28-B and 28-G the forest class. Accordingly, the first important value of Burmannii Beauv was found in two ground vegetation below the larch. Therefore, this species could be quantitatively considered as the forest indicator species. Common species of each community appeared 18 species out of 34 species in the ground vegetation under two larch communities. The ground vegetation of the 28-B forest class showed more than that of the 28-G forest class. the similarity of the ground vegetation was measrued by the Frequency Index Community Coefficient. The differences between the associations were lcearly manifested by the ground vegetation tested by Gleason's Frequency Index of Community Coefficient for the analysis of each stratal society of all associations. According to F.I.C.C. the ground vegetation under two larch(28-B and 28-G) forest classes showed higher value. An investigation into the relationship of physical and chemical properties of soil and site was considered the next step to be taken in the study of the larch site classification.

  • PDF

Plant Community Structure Analysis in Noinbong area of Odaesan National Park (오대산 국립공원 노인봉지역 식물군집구조분석)

  • 최송현;권전오;민성환
    • Korean Journal of Environment and Ecology
    • /
    • v.9 no.2
    • /
    • pp.156-165
    • /
    • 1996
  • To investigate the forest structure and to suggest the management of vegetation landscape in Noinbong area, Pdaesan National Pa, twelve plots were set up and surveyed. According to the acalysis of classification by TWINSPAN, the community was divided by two groups of Carpinus laxiflora - Quercus mongolica community and the other is Betula costata - schmidtii - C. laxiflora community. It was found out that the successional stage of Noinbong forests was climax and introduced-climax by the analysis of species structure, similarity index and species diversity. The number of individuals was about 120~130 and species was 17 per 100m$^{2}$. Through the analysis of basal area and DBH class distribution, it was estimated that C. laxiflora, B. costata, and B. schmidtii will be clmax species instead of Q. mongolica in tree layer, and in the subtree layer, Acer pseudo-sieboldianum will be dominant species.

  • PDF

A Comparative Study of Carbon Absorption Measurement Using Hyperspectral Image and High Density LiDAR Data in Geojedo

  • Choi, Byoung Gil;Na, Young Woo;Shin, Young Seob
    • Journal of the Korean Society of Surveying, Geodesy, Photogrammetry and Cartography
    • /
    • v.35 no.4
    • /
    • pp.231-240
    • /
    • 2017
  • This paper aims to study a method to estimate precise carbon absorption by quantification of forest information that uses accurate LiDAR data, hyperspectral image. To estimate precise carbon absorption value by using spatial data, a problem was found out of carbon absorption value estimation method with statistical method, which is already existed method, and then offered optimized carbon absorption estimation method with spatial information by analyzing with methods of compare digital aerial photogrammetry and LiDAR data. It turned out possible Precise classification and quantification in case of using LiDAR and hyperspectral image. Various classification of tree species was possible with use of LiDAR and hyperspectral image. Classification of hyperspectral image was matched in general with field survey and Mahalanobis distance classification method. Precise forest resources could be extracted using high density LiDAR data. Compared with existing method, 19.7% in forest area, 19.2% in total carbon absorption, 0.9% in absorption per unit area of difference created, and improvement was found out to be estimated precisely in international code.

An Approach to the Spectral Signature Analysis and Supervised Classification for Forest Damages - An Assessment of Low Altitued Airborne MSS Data -

  • Kim, Choen
    • Korean Journal of Remote Sensing
    • /
    • v.7 no.2
    • /
    • pp.149-163
    • /
    • 1991
  • This paper discusses the capabilities of airborne remotely sensed data to detect and classify forest damades. In this work the AMS (Aircraft Multiband Scanner) was used to obtain digital imagery at 300m altitude for forest damage inventory in the Black Forest of Germany. MSS(Multispectral Scanner) digital numbers were converted to spectral emittance and radiance values in 8 spectral bands from the visible to the thermal infrared and submitted to a maximum-likelihood classification for : (1) tree species ; and. (2) damage classes. As expected, the resulted, the results of MSS data with high spatial resolution 0.75m$\times$0.75m enabled the detection and identification of single trees with different damages and were nearly equivalent to the truth information of ground checked data.

Molecular Phylogenetic Position of Abbottina springeri (Cypriniformes: Cyprinidae) Based on Nucleotide Sequences of RAG1 Gene (RAG1 유전자의 염기서열에 기초한 왜매치 Abbottina springeri (잉어목, 잉어과)의 분자계통학적 위치)

  • Kim, Keun-Yong;Bang, In-Chul
    • Korean Journal of Ichthyology
    • /
    • v.22 no.4
    • /
    • pp.273-278
    • /
    • 2010
  • Partial nucleotide sequences of nuclear protein-coding recombination activating gene 1 (RAG1) gene of two Abbottina and five Microphysogobio species residing in Korea were analyzed to elucidate the molecular phylogenetic position of A. springeri Banarescu and Nalbant. In RAG1 tree A. rivularis was clearly separated from the monophyletic lineage composed of A. springeri, Biwia zezera and Microphysogobio species. Within this lineage B. zezera showed sister-group relationship to the monophyletic group composed of A. springeri and five Microphysogobio species. Thus, our phylogenetic tree revealed the polyphyletic nature of two Abbottina species from Korea, which result is well congruent with the previous phyletic assumption based on osteological features. The current classification of Abbottina and Microphysogobio based on morphological criteria, such as the presence or absence of papillae on lips and size of swim bladder with or without encapsulation, does not reflect their true evolutionary history.

Vegetation Studies of Girbanr Hills, District Swat, Pakistan (Girbanr Hills의 식생)

  • Hussain, Farrukh;Mohammad Ilyas;Kil, Bong-Seop
    • The Korean Journal of Ecology
    • /
    • v.18 no.2
    • /
    • pp.207-218
    • /
    • 1995
  • Five non-stratified plant communities, Dichanthium-Artemisia-Themeda, Dichanthium- Plectranthes-Themeda, Plectranthes-Carex-Myrine, Heteropogon- Dichanthium-Dodonaea and Artemisia-Cynodon-Ber-beris were recognized in Girbanr hills, District Swat, during autumn, 1992. The indices of similarity showed that the communities were dissimilar. The percentage of leptophyllous and nanophyllous, terophytic and nanophanerophytic species were higher than other groups. These indicate dry and disturben conditions. Due to autumn season most of the species were entering in dormant stage. There was no tree layer on southern slopes while northern slopes had a poor layer of Pinus roxburghii. Deforestation, uprooting, terrace cultivation and overgrazing followed by erosion are the main ecological problems. The presence of isolated trees of Pinus roxburghii and stunted Olea ferruginea indicate that the original vegetation might have been of chirpine or Olea-Pinus type. The area having resource potential can be changed into a forest or rangeland by proper protection and management. Suggestions in favour of improvement are given.

  • PDF