• 제목/요약/키워드: that-Deletion

검색결과 1,087건 처리시간 0.028초

바실러스 서브틸리스의 fsrA small RNA에 의한 TCA 회로의 유전자 조절 (Control of Genes in TCA Cycle by fsrA Small RNA in Bacillus subtilis)

  • 이상수
    • 자연과학논문집
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    • 제19권1호
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    • pp.57-64
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    • 2008
  • 바실러스 서브틸리스 fsrA 유전자는 대장균의 ryhB 유전자와 유사한 역할을 하는 유전자로 철 조절 유전자인 fur 유전자의 조절을 받는다. 철의 농도가 높을 때에는 ryhB 유전자의 전사가 fur에 의해 억제되지만 철의 농도가 낮아지면 세포내의 철을 보다 효율적으로 절약하기 위하여 ryhB의 전사 억제가 풀려 ryhB small RNA가 생성되고 이는 철을 함유하는 sdhCDAB (succinate dehydrogenase) 유전자의 발현을 억제한다. 본 연구에서는 바실러스에서 이에 상응하는 유전자인 fur와 fsrA의 결실 균주들을 대상으로 여러 TCA 회로의 유기산을 탄소원에서의 이들 균주들의 성장을 측정하였다. 실험 결과 대장균의 fur/ryhB와 마찬가지로 succinate를 탄소원으로 할 경우 바실러스 fur 결실 균주는 성장이 매우 적었지만 fur/fsrA 결실 균주는 정상적으로 성장하였다. 또한 succinate 이외에 citrate, fumarate의 경우도 succinate와 유사한 결과를 보이는 반면에 malate의 경우 fur나 fur/fsrA의 결실 균주들에서 성장이 큰 차이를 보이지 않았다. 이 결과 TCA 회로에서 succinate 상부에 해당하는 유전자들은 fsrA에 의해 억제되나 succinate 하부에 해당하는 유전자들은 fsrA에 의해 억제되지 않는 것으로 생각된다.

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Increased Sensitivity to Chloramphenicol by Inactivation of manB in Streptomyces coelicolor

  • Rajesh, Thangamani;Song, Eunjung;Lee, Bo-Rahm;Park, Sung-Hee;Jeon, Jong-Min;Kim, Eunjung;Sung, Changmin;Lee, Jae-Hun;Yoo, Dongwon;Park, Hyung-Yeon;Kim, Yun-Gon;Kim, Byung-Gee;Yang, Yung-Hun
    • Journal of Microbiology and Biotechnology
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    • 제22권10호
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    • pp.1324-1329
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    • 2012
  • Phosphomannomutase (ManB) is involved in the biosynthesis of GDP-mannose, which is vital for numerous processes such as synthesis of carbohydrates, production of alginates and ascorbic acid, and post-translational modification of proteins. Here, we discovered that a deletion mutant of manB (BG101) in Streptomyces coelicolor (S. coelicolor) showed higher sensitivity to bacteriostatic chloramphenicol (CM) than the wild-type strain (M145), along with decreased production of CM metabolites. Deletion of manB also decreased the mRNA expression level of drug efflux pumps (i.e., cmlR1 and cmlR2) in S. coelicolor, resulting in increased sensitivity to CM. This is the first report on changes in antibiotic sensitivity to CM by deletion of one glycolysis-related enzyme in S. coelicolor, and the results suggest different approaches for studying the antibiotic-resistant mechanism and its regulation.

Construction and immunization with double mutant ΔapxIBD Δpnp forms of Actinobacillus pleuropneumoniae serotypes 1 and 5

  • Dao, Hoai Thu;Truong, Quang Lam;Do, Van Tan;Hahn, Tae-Wook
    • Journal of Veterinary Science
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    • 제21권2호
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    • pp.20.1-20.13
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    • 2020
  • Actinobacillus pleuropneumoniae (APP) causes a form of porcine pleuropneumonia that leads to significant economic losses in the swine industry worldwide. The apxIBD gene is responsible for the secretion of the ApxI and ApxII toxins and the pnp gene is responsible for the adaptation of bacteria to cold temperature and a virulence factor. The apxIBD and pnp genes were deleted successfully from APP serotype 1 and 5 by transconjugation and sucrose counter-selection. The APP1ΔapxIBDΔpnp and APP5ΔapxIBDΔpnp mutants lost hemolytic activity and could not secrete ApxI and ApxII toxins outside the bacteria because both mutants lost the ApxI- and ApxII-secreting proteins by deletion of the apxIBD gene. Besides, the growth of these mutants was defective at low temperatures resulting from the deletion of pnp. The APP1ΔapxIBDΔpnp and APP5ΔapxIBDΔpnp mutants were significantly attenuated compared with wild-type ones. However, mice vaccinated intraperitoneally with APP5ΔapxIBDΔpnp did not provide any protection when challenged with a 10-times 50% lethal dose of virulent homologous (APP5) and heterologous (APP1) bacterial strains, while mice vaccinated with APP1ΔapxIBDΔpnp offered 75% protection against a homologous challenge. The ΔapxIBDΔpnp mutants were significantly attenuated and gave different protection rate against homologous virulent wild-type APP challenging.

안티 포렌식 동향 분석 및 대응 방안 연구 (Analysis of anti-forensic trends and research on countermeasuresucation)

  • 한현동;조영준;조재연;김세온;한완섭;최용준;이정훈;김민수
    • 융합보안논문지
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    • 제23권1호
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    • pp.97-107
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    • 2023
  • 4차 산업혁명 시대에 디지털기기 보급의 대중화와 함께 이를 대상으로 한 사이버 범죄가 증가함에 따라 디지털 데이터 증거 확보의 중요성이 대두되고 있다. 하지만 디지털 데이터 증거 확보의 어려움은 디지털 데이터를 조작, 삭제, 난독화 등 분석 시간을 증가시키거나 불가능하게 만드는 안티 포렌식 기법을 활용하기 때문이다. 이러한 안티 포렌식은 디지털 포렌식 측면에서 증거물의 회손 및 차단하는 일련의 행위로 정의하며, 안티 포렌식 기법으로 데이터 파괴, 데이터 암호화, 데이터 은닉, 데이터 변조 등으로 분류된다. 따라서 본 연구에서는 안티포렌식 기법을 데이터 은닉 및 삭제 (난독화 및 암호화)로 분류하여 최근 연구동향을 조사 및 분석하고 향후 안티포렌식의 연구 방향을 제안하고자 한다.

Role of Citrate Synthase in Acetate Utilization and Protection from Stress-Induced Apoptosis

  • Lee, Yong-Joo;Kang, Hong-Yong;Maeng, Pil Jae
    • 한국미생물학회:학술대회논문집
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    • 한국미생물학회 2008년도 International Meeting of the Microbiological Society of Korea
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    • pp.39-41
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    • 2008
  • The yeast Saccharomyces cerevisiae has been shown to contain three isoforms of citrate synthase (CS). The mitochondrial CS, Cit1, catalyzes the first reaction of the TCA cycle, i.e., condensation of acetyl-CoA and oxaloacetate to form citrate [1]. The peroxisomal CS, Cit2, participates in the glyoxylate cycle [2]. The third CS is a minor mitochondrial isofunctional enzyme, Cit3, and related to glycerol metabolism. However, the level of its intracellular activity is low and insufficient for metabolic needs of cells [3]. It has been reported that ${\Delta}cit1$ strain is not able to grow with acetate as a sole carbon source on either rich or minimal medium and that it shows a lag in attaining parental growth rates on nonfermentable carbon sources [2, 4, 5]. Cells of ${\Delta}cit2$, on the other hand, have similar growth phenotype as wild-type on various carbon sources. Thus, the biochemical basis of carbon metabolism in the yeast cells with deletion of CIT1 or CIT2 gene has not been clearly addressed yet. In the present study, we focused our efforts on understanding the function of Cit2 in utilizing $C_2$ carbon sources and then found that ${\Delta}cit1$ cells can grow on minimal medium containing $C_2$ carbon sources, such as acetate. We also analyzed that the characteristics of mutant strains defective in each of the genes encoding the enzymes involved in TCA and glyoxylate cycles and membrane carriers for metabolite transport. Our results suggest that citrate produced by peroxisomal CS can be utilized via glyoxylate cycle, and moreover that the glyoxylate cycle by itself functions as a fully competent metabolic pathway for acetate utilization in S. cerevisiae. We also studied the relationship between Cit1 and apoptosis in S. cerevisiae [6]. In multicellular organisms, apoptosis is a highly regulated process of cell death that allows a cell to self-degrade in order for the body to eliminate potentially threatening or undesired cells, and thus is a crucial event for common defense mechanisms and in development [7]. The process of cellular suicide is also present in unicellular organisms such as yeast Saccharomyces cerevisiae [8]. When unicellular organisms are exposed to harsh conditions, apoptosis may serve as a defense mechanism for the preservation of cell populations through the sacrifice of some members of a population to promote the survival of others [9]. Apoptosis in S. cerevisiae shows some typical features of mammalian apoptosis such as flipping of phosphatidylserine, membrane blebbing, chromatin condensation and margination, and DNA cleavage [10]. Yeast cells with ${\Delta}cit1$ deletion showed a temperature-sensitive growth phenotype, and displayed a rapid loss in viability associated with typical apoptotic hallmarks, i.e., ROS accumulation, nuclear fragmentation, DNA breakage, and phosphatidylserine translocation, when exposed to heat stress. Upon long-term cultivation, ${\Delta}cit1$ cells showed increased potentials for both aging-induced apoptosis and adaptive regrowth. Activation of the metacaspase Yca1 was detected during heat- or aging-induced apoptosis in ${\Delta}cit1$ cells, and accordingly, deletion of YCA1 suppressed the apoptotic phenotype caused by ${\Delta}cit1$ mutation. Cells with ${\Delta}cit1$ deletion showed higher tendency toward glutathione (GSH) depletion and subsequent ROS accumulation than the wild-type, which was rescued by exogenous GSH, glutamate, or glutathione disulfide (GSSG). Beside Cit1, other enzymes of TCA cycle and glutamate dehydrogenases (GDHs) were found to be involved in stress-induced apoptosis. Deletion of the genes encoding the TCA cycle enzymes and one of the three GDHs, Gdh3, caused increased sensitivity to heat stress. These results lead us to conclude that GSH deficiency in ${\Delta}cit1$ cells is caused by an insufficient supply of glutamate necessary for biosynthesis of GSH rather than the depletion of reducing power required for reduction of GSSG to GSH.

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미세정자주입술로 임신이 된 남자태아의 Y 염색체 미세결실의 Vertical Transmission, de novo, 그리고 Expansion의 연구 (A Vertical Transmission, de novo, and Expansion of Y chromosome Microdeletion in Male Fetuses Pregnant after Intracytoplasmic Sperm Injection)

  • 김현아;이숙환;조성원;정혜진;손수민;강수진;배성근;김수희;윤태기
    • Clinical and Experimental Reproductive Medicine
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    • 제31권2호
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    • pp.105-110
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    • 2004
  • Objectives: Despite severe oligospermia, males with Y chromosome microdeletion can achieve conception through ICSI (Intracytoplasmic Sperm Injection). However, ICSI may not only result in the transmission of microdeletions but also the expansion of deletion to the offspring. The purpose of this study was to screen vertical transmission, expansion of microdeletions and de novo deletion in male fetuses conceived by ICSI. Materials and Methods: A total of 32 ICSI treated patients with their 33 (a case of twin) male fetuses conceived by ICSI were used to make this study group. Sequence-tagged sites (STSs)-based PCR analyses were performed on genomic DNA isolated from peripheral blood of fathers and from the amniocytes of male fetuses. Ten primer pairs namely, sY134, sY138, MK5, sY152, sY147, sY254, sY255, SPGY1, sY269 and sY158 were used. The samples with deletions were verified at least three times. Results: We detected a frequency of 12.5% (4 of the 32 patients) of microdeletions in ICSI patients. In 4 patients with detected deletions, two patients have proven deletions on single STS marker and their male fetuses have the identical deletion in this region. Another two patients have two and three deletions, but their male fetuses have more than 3 deletions which include deletions to their father's. Meanwhile, seven male fetuses, whose fathers were analyzed to have all 10 STS markers present, have deletions present in at least one or more of the markers. Conclusions: Although the majority of deletions on the Y chromosome are believed to arise de novo, in some cases a deletion has been transmitted from the fertile father to the infertile patient. In other cases the deletion was transmitted through ICSI treatment, it is likely that one sperm cell is injected through the oocyte's cytoplasm and fertilization can be obtained from spermatozoa. Our tests for deletion were determined by PCR and our results show that the ICSI treatment may lead to vertical transmission, expansion and de novo Y chromosome microdeletions in male fetuses. Because the sample group was relatively small, one should be cautious in analyzing these data. However, it is important to counsel infertile couples contemplating ICSI if the male carries Y chromosomal microdeletions.

Lack of Association Between GSTM1 and GSTT1 Polymorphisms and Brain Tumour Risk

  • Sima, Xiu-Tian;Zhong, Wei-Ying;Liu, Jian-Gang;You, Chao
    • Asian Pacific Journal of Cancer Prevention
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    • 제13권1호
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    • pp.325-328
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    • 2012
  • Objective: Glutathione S-transferases (GSTs) are important enzymes that are involved in detoxification of environmental carcinogens. Molecular epidemiological studies have been conducted to investigate the association between GSTM1 and GSTT1 homozygous deletion polymorphisms and brain tumours but results have been conflicting. The aim of this study was to clarify this problem using a meta-analysis. Methods: A total of 9 records were identified by searching the PubMed and Embase databases. Fixed- and random-effects models were performed to estimate the pooled odds ratios. Results: No significant association was found between the GSTM1 and GSTT1 homozygous deletion polymorphisms and risk of brain tumours, including glioma and meningioma. Similar negative results were also observed in both population-based and hospital-based studies. Conclusion: These findings indicate that the GSTM1 and GSTT1 polymorphisms may not be related to the development of brain tumours.

발음열 자동 변환을 이용한 한국어 음운 변화 규칙의 통계적 분석 (Statistical Analysis of Korean Phonological Rules Using a Automatic Phonetic Transcription)

  • 이경님;정민화
    • 대한음성학회:학술대회논문집
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    • 대한음성학회 2002년도 11월 학술대회지
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    • pp.81-85
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    • 2002
  • We present a statistical analysis of Korean phonological variations using automatic generation of phonetic transcription. We have constructed the automatic generation system of Korean pronunciation variants by applying rules modeling obligatory and optional phonemic changes and allophonic changes. These rules are derived from knowledge-based morphophonological analysis and government standard pronunciation rules. This system is optimized for continuous speech recognition by generating phonetic transcriptions for training and constructing a pronunciation dictionary for recognition. In this paper, we describe Korean phonological variations by analyzing the statistics of phonemic change rule applications for the 60,000 sentences in the Samsung PBS(Phonetic Balanced Sentence) Speech DB. Our results show that the most frequently happening obligatory phonemic variations are in the order of liaison, tensification, aspirationalization, and nasalization of obstruent, and that the most frequently happening optional phonemic variations are in the order of initial consonant h-deletion, insertion of final consonant with the same place of articulation as the next consonants, and deletion of final consonant with the same place of articulation as the next consonants. These statistics can be used for improving the performance of speech recognition systems.

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센터링 이론과 대화체에서의 논항 생략 현상 (Centering Theory and Argument Deletion in Spoken Korean)

  • 홍민표
    • 인지과학
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    • 제11권1호
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    • pp.9-24
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    • 2000
  • 본고는 한국어 대화체에서 자주 관찰되는 논항 명사구의 생략현상에 대한 분석을 제시한다. 약 한 시간 분량의 라디오 대담 프로그램을 녹취, 전사하여 획득한 자료를 중심으로, 한국어 대화체에서 논항 명사구의 생략 빈도 및 그 생략 논항의 선행사를 지시대상의 유형을 분류한 통계를 제시한다. 나아가 센터링 이론을 적용하여 이들 생략 논항의 선행사를 결정하는 노력에 있어 청/화자와 일반인을 지칭하는 영형 대명사를 센터링 이론의 적용대상에서 제외시킬 것을 제안하고, 이렇게 제외된 청/화자 지칭 영형 대명사가 보이는 언어적 단서를 추적하여 제시한다. 또한 센터의 순위 및 전이 유형을 결정하는 과정에서 반드시 고려해야할 한국어의 특성에 대해 주제와 주어의 차이. 구문분석의 영향, 그리고 세상지식과의 충돌 등을 중심으로 지적한다.

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Byr4p, a Possible Regulator of Mitosis and Cytokinesis in Fission Yeast, Localizes to the Spindle Pole Body by its C-Terminal Domains

  • Jwa, Mi-Ri;Shin, Se-Jeong;Albright, Charles F.;Song, Ki-Won
    • BMB Reports
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    • 제32권1호
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    • pp.92-97
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    • 1999
  • Cytokinesis and septation should be coordinated to nuclear division in the cell division cycle for precise transmission of the genome into daughter cells. byr4, an essential gene in fission yeast Schizosaccharomyces pombe, regulates the timing of cytokinesis and septation in a dosage-dependent manner. We examined the intracellular localization of the Byr4 protein by expressing byr4 as a fusion of green fluorescence protein (GFP). The Byr4 protein localizes as a single dot on the nuclear periphery of interphase cells, duplicates before mitosis, and the duplicated dots segregate with the nuclei in anaphase. The behavior of Byr4p throughout the cell cycle strongly suggests that Byr4p is localized to the spindle pole body (SPB), a microtubule organizing center (MTOC) in yeast. The presence of the Byr4 protein in the SPB is consistent with its function to coordinate mitosis and cytokinesis. We also mapped the domains of Byr4p for its proper localization to SPB by expressing various byr4 deletion mutants as GFP fusions. Analyses of the diverse byr4 deletion mutants suggest that the indirect repeats and the regions homologous to the open reading frame (ORF) YJR053W of S. cerevisiae in its C-terminus are essential for its localization to the SPB.

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