• Title/Summary/Keyword: taxonomic diagnosis

Search Result 36, Processing Time 0.027 seconds

A Report of Carcinus aestuarii (Decapoda: Brachyura: Carcinidae) from Korea

  • Lee, Sang-kyu;Lee, Sang-Hui;Kim, Hyun Kyong;Song, Sung Joon
    • Animal Systematics, Evolution and Diversity
    • /
    • v.36 no.4
    • /
    • pp.420-423
    • /
    • 2020
  • As a result of continuous taxonomic studies on the Korean crabs, Carcinus aestuarii Nardo, 1847 belonging to the superfamily Portunoidea is newly reported from Korean waters. Carcinus aestuarii has characteristics as followings: cardiac, hepartic and brachial regions are divided by deep furrow; shape of three lobes in frontal area is flatter with hairy; inside of carpus is with one sharp tooth; the posterior-lateral margin of the carapace is concave, and so on. The examined specimen doesn't have hairy and bump on outer margin of the chelipeds which differed from the previous description of the specimens collected from Tokyo Bay, Japan. Here, the diagnosis and the picture of Korean specimen is provided. Korean portunoids currently consist of 20 species belonging to 10 genera.

DNA Barcoding of Rocinela niponia (Isopoda, Cymothooidea, Aegidae) from South Korea

  • Kim, Sung Hoon;Choi, Hyun Ki;Kim, Jong Guk
    • Animal Systematics, Evolution and Diversity
    • /
    • v.38 no.2
    • /
    • pp.108-112
    • /
    • 2022
  • An aegid species, Rocinela niponia Richardson, 1909, is a Far Eastern species known from Korean and Japanese waters. In this study, mitochondrial cytochrome c oxidase subunit I (COI) sequences of R. niponia were determined based on four specimens collected from the subtidal zone of Chujado Island, South Korea. We compared DNA barcoding data of this species with its congeners. As a result, there was no intra-specific genetic distance between the four COI sequences of R. niponia. Inter-specific distances between R. niponia and other five aegid species ranged from 23.8% to 35.6%. Morphological diagnosis and images of R. niponia are also provided as a valuable contribution toward the identification of Rocinela species in further taxonomic and ecological studies.

Diagnostic Role of Bile Pigment Components in Biliary Tract Cancer

  • Keun Soo Ahn;Koo Jeong Kang;Yong Hoon Kim;Tae-Seok Kim;Kwang Bum Cho;Hye Soon Kim;Won-Ki Baek;Seong-Il Suh;Jin-Yi Han
    • Biomolecules & Therapeutics
    • /
    • v.31 no.6
    • /
    • pp.674-681
    • /
    • 2023
  • Bile pigment, bilirubin, and biliverdin concentrations may change as a results of biliary tract cancer (BTC) altering the mechanisms of radical oxidation and heme breakdown. We explored whether changes in bile pigment components could help distinguish BTC from benign biliary illness by evaluating alterations in patients with BTC. We collected bile fluid from 15 patients with a common bile duct stone (CBD group) and 63 individuals with BTC (BTC group). We examined the bile fluid's bilirubin, biliverdin reductase (BVR), heme oxygenase (HO-1), and bacterial taxonomic abundance. Serum bilirubin levels had no impact on the amounts of bile HO-1, BVR, or bilirubin. In comparison to the control group, the BTC group had considerably higher amounts of HO-1, BVR, and bilirubin in the bile. The areas under the curve for the receiver operating characteristic curve analyses of the BVR and HO-1 were 0.832 (p<0.001) and 0.891 (p<0.001), respectively. Firmicutes was the most prevalent phylum in both CBD and BTC, according to a taxonomic abundance analysis, however the Firmicutes/Bacteroidetes ratio was substantially greater in the BTC group than in the CBD group. The findings of this study showed that, regardless of the existence of obstructive jaundice, biliary carcinogenesis impacts heme degradation and bile pigmentation, and that the bile pigment components HO-1, BVR, and bilirubin in bile fluid have a diagnostic significance in BTC. In tissue biopsies for the diagnosis of BTC, particularly for distinguishing BTC from benign biliary strictures, bile pigment components can be used as additional biomarkers.

Diagnosis, Pathology, and Taxonomy of Perkinsus sp. Isolated from the Manila clam Ruditapes philippinarum in Korea

  • Choi, Kwang-Sik;Park, Kyung-Il;Cho, Moon-Jae;Soudant, Philippe
    • Journal of Aquaculture
    • /
    • v.18 no.3
    • /
    • pp.207-214
    • /
    • 2005
  • We report on the diagnosis, pathology, and taxonomy of Perkinsus sp. infection in Manila clams (Ruditapes philippinarum) from Korean waters. Amplimers were designed from internal portions of the non-transcribed spacer (NTS) of P. atlanticus for molecular diagnosis of Perkinsus infection. PCR-based identification methods and an in situ hybridization assay were developed for detection of Perkinsus sp. in live tissues as well as in histological preparations. Hybridization signals were observed around the nucleus of trophozoites. Positive results from PCR and in situ hybridization indicated that Korean Perkinsus sp. is genetically identical with P. atlanticus reported in Europe, which is currently synonymous with P. olseni reported from Australia. Microscopic morphological features of different lift stages of Perkinsus sp. appeared very similar to those of P. atlanticus. Severely infected clams often exhibited white nodules on their mantles and gills as a consequence of inflammation. In lightly to moderately infected clams, Perkinsus sp. was mainly found in gill tissues, whereas the protozoan parasites were found in digestive tracts, gonadal tissues, and foot tissues of heavily infected clams. It is likely that the gills are the portal of the infection and that P. olseni spreads to other tissues as the infection advances. In conclusion, by considering the taxonomic priority of P. olseni, Korean Perkinsus sp. is accepted as P. olseni. P. olseni appears to be common on tidal flats on the western and southern Korean coasts and is considered to be a pathogen capable of causing mass mortality of clams.

Lophomonas blattarum-like organism in bronchoalveolar lavage from a pneumonia patient: current diagnostic scheme and polymerase chain reaction can lead to false-positive results

  • Moses Lee;Sang Mee Hwang;Jong Sun Park;Jae Hyeon Park;Jeong Su Park
    • Parasites, Hosts and Diseases
    • /
    • v.61 no.2
    • /
    • pp.202-209
    • /
    • 2023
  • Lophomonas blattarum is an anaerobic protozoan living in the intestine of cockroaches and house dust mites, with ultramicroscopic characteristics such as the presence of a parabasal body, axial filament, and absence of mitochondria. More than 200 cases of Lophomonas infection of the respiratory tract have been reported worldwide. However, the current diagnosis of such infection depends only on light microscopic morphological findings from respiratory secretions. In this study, we attempted to provide more robust evidence of protozoal infection in an immunocompromised patient with atypical pneumonia, positive for Lophomonas-like protozoal cell forms. A direct search of bronchoalveolar lavage fluid via polymerase chain reaction (PCR), transmission electron microscopy (TEM), and metagenomic next-generation sequencing did not prove the presence of protozoal infection. PCR results were not validated with sufficient rigor, while de novo assembly and taxonomic classification results did not confirm the presence of an unidentified pathogen. The TEM results implied that such protozoal forms in light microscopy are actually non-detached ciliated epithelial cells. After ruling out infectious causes, the patient's final diagnosis was drug-induced pneumonitis. These findings underscore the lack of validation in the previously utilized diagnostic methods, and more evidence in the presence of L. blattarum is required to further prove its pathogenicity.

First Report in Korea of the Stored Grain Pest Cynaeus angustus (LeConte) and a Pictorial Identification Key for Tenebrionid Pests in Stored Products (새로운 저장곡물해충 Cynaeus angustus (LeConte) 및 저장산물의 거저리과 해충에 대한 도해검색)

  • Hong, Ki-Jeong;Yun, Tae-Sung
    • Korean journal of applied entomology
    • /
    • v.56 no.2
    • /
    • pp.223-227
    • /
    • 2017
  • The larger black flour beetle, Cynaeus angustus (LeConte) (Diaperinae: Tenebrionidae) is reported for the first time in Korea. C. angustus is economically important as an insect pest in stored products in the Nearctic region, and has been identified in several rice mills in Korea. Taxonomic diagnosis and photographs presenting the morphology of adults and larvae are provided, along with a pictorial identification key to 17 tenebrionid pests detected during quarantine in stored products in Korea.

Taxonomic Revision of Notohymena gangwonensis (Protozoa: Ciliophora), with Notes on Its Cortical Granules and Scanning Electron Micrographs

  • Moon, Ji Hye;Kim, Kang-San;Chae, Kyu Seok;Min, Gi-Sik;Jung, Jae-Ho
    • Animal Systematics, Evolution and Diversity
    • /
    • v.36 no.2
    • /
    • pp.113-122
    • /
    • 2020
  • From a moss sample, we isolated and identified Notohymena gangwonensis Kim et al., 2019 based on morphological and molecular data. The moss and type population has completely identical 18S rRNA (nuclear small subunit ribosomal RNA) gene sequences and both are highly similar in morphological and morphometric attributes, except for the diameter and arrangement of the cortical granules. Thus, we reexamined the type materials(i.e., micrographs and gDNA) and resulted in finding mistakes made by the authors of the species. Based on these data and supporting materials newly obtained (i.e., internal transcribed spacer [ITS] 1, ITS2, 5.8S, and partial 28S rDNA sequences, and scanning electron micrographs), we provide improved diagnosis of the species to clarify its identity. In addition, a key for Notohymena species is provided.

The Trend and Prospect of the Nursing Intervention Classification (간호중재분류의 동향과 전망)

  • Park, Sung-Ae
    • Journal of Home Health Care Nursing
    • /
    • v.3
    • /
    • pp.75-85
    • /
    • 1996
  • Nursing Intervention Classification(NIC) includes the 433 intervention lists to standardize the nursing language. Efforts to standardize and classify nursing care are important because they make explicit what has previously been implicit, assumed and unknown. NIC is a standardized language of both nurse-initiated and physician-initiated nursing treatments. Each of the 433 interventions has a label, definition and set of activities that a nurse does to carry it out. It defines the interventions performed by all nurses no matter what their setting or specialty. Principles of label, definition and activity construction were established so there is consistency across the classification. NIC was developed for following reasons; 1. Standandization of the nomen clature of nursing treatments. 2. Expansion of nursing knowledge about the links between diagnoses, treatments and outcomes. 3. Devlopment of nursing and health care information systems. 4. Teaching decision making to nursing students. 5. Determination of the costs of service provided by nurses. 6. Planning for resources needed in nursing practice settings. 7. Language to communicate the unigue function of nursing. 8. Articulation with the classification systems of other health care providers. The process of NIC development ; 1. Develop implement and evaluate an expert review process to evaluate feedback on specific interventions in NIC and to refine the interventions and classification as feedback indicates. 2. Define and validate indirect care interventions. 3. Refine, validate and publish the taxonomic grouping for the interventions. 4. Translate the classification into a coding system that can be used for computerization for articulation with other classifications and for reimbursement. 5. Construct an electronic version of NIC to help agencies in corporate the classifiaction into nursing information systems. 6. Implement and evaluate the use of the classification in a nursing information system in five different agencies. 7. Establish mechanisms to build nursing knowledge through the analysis of electronically retrievable clinical data. 8. Publish a second edition of the nursing interventions classification with taxonomic groupings and results of field testing. It is suggested that the following researches are needed to develp NIC in Korea. 1. To idenilfy the intervention lists in Korea. 2. Nursing resources to perform the nursing interventions. 3. Comparative study between Korea and U.S.A. on NIC. 4. Linkage among nursing diagnosis, nursing interventions and nursing outcomes. 5. Linkage between NIC and other health care information systems. 6. determine nursing costs on NIC.

  • PDF

A Taxonomic Revision of the Subfamily Gobiinae(Pisces, Gobiidae) from Korea (한국산 망둑어아과 어류의 분류학적 재검토)

  • KIM Ik-Soo;LEE Yong-Joo;KIM Yong-Uk
    • Korean Journal of Fisheries and Aquatic Sciences
    • /
    • v.20 no.6
    • /
    • pp.529-542
    • /
    • 1987
  • Thirty three species belonging to twenty genera in the subfamily Gobiinae of Korea were reviewed and key to species and genera were provided. Among them twenty seven species captured during 1985-1987 were examined on the cephalic sensory canal systems for the taxonomic review, and classified into 4 groups based on the presence or absence of the canal and their canal pore patterns. It was confirmed that the pore patterns of preopercular and anterior ocular-scapular canal were important in the diagnosis of gobiid genera or species and in the discussion of the specialized species group. It was considered that the genus of Acentrogobius masago should be transferred to Pseudogobius from Acentrogobius, because A. masago was more similar to P. jausnicus than to A. pflaumi and its congeneric species in their cephalicc sensory canal systems. Some populations of Chaenogobius annularis and Acanthogobius lactipes showed the geographical variations in cephalic pit organs and the number of predorsal scales. The endemic gobiid species was not found the Korean waters, but some species showed a disjunct distributions between the west and the east coast waters in Korea. The south coast was inhabited by the abundant species including twenty seven species of seventeen genera. The genera of Acanthogobius, Chaenogobius, and Chasmichthys were considered to be the common genera in Korean waters.

  • PDF

Unrecorded species of Korean invertebrates discovered through the project of 'Discovery of Korean Indigenous Species' II

  • Su-Jung Ji;Chuleui Jung;Hyun Woo Bang;Min Ok Song;Jongwoo Jung;Seong Myeong Yoon;Seunghwan Lee;Seoyoung Keum;Hee-Min Yang;Dongmin Lee;Geon Hyeok Lee;Jaeseok Oh;Kichoon Kim;Hansol Park;Heejin Moon;Omid Joharchi;Yeseul Kang;Keeseon S. Eom;Kyung Jin Lee;Ye Eun;Taeho Kim;Ivana Karanovic;Jeounghee Lee;Seongjun Choe;Gi-Sik Min
    • Journal of Species Research
    • /
    • v.12 no.1
    • /
    • pp.68-89
    • /
    • 2023
  • This is the second catalog listing unrecorded invertebrates discovered during the research project 'Discovery of Korean Indigenous Species'. The data to compile the catalog were primarily gathered from the final reports of the project, between 2013 and 2021. We present 38 previously undocumented species, belonging to four phyla (Platyhelminthes, Annelida, Rotifera and Arthropoda). Samples were collected from intertidal coastal waters, soil, freshwater ponds, reservoirs and hosts in South Korea. In this study, we provide brief taxonomic information, including collection site (GPS), diagnosis, specimen vouchers, figures of representative individuals and the Korean name newly assigned, for each species. All data were reviewed and updated by experts working on the respective taxonomic group. The aim of the present study is to publish species that have been previously reported through the project. Upon publication, these species will be added to the 'National Species List of Korea', curated by the National Institute of Biological Resources(NIBR).