• Title/Summary/Keyword: t-SNE

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Distinct cell subtype composition using gene expression data in oral cancer (유전자 발현 데이터 기반 구강암에서의 세포 조성 차이 분석)

  • Rhee, Je-Keun
    • Journal of the Korea Convergence Society
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    • v.10 no.8
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    • pp.59-65
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    • 2019
  • There are various subtypes of cells in cancer tissues, but it is hard to confirm their composition experimentally. Here, we estimated the cell composition of each sample from gene expression data by using statistical machine learning approaches, two different regression models and investigated whether the cell composition was different between cancer and normal tissue. As a result, we found that CD8 T cell and Neutrophil were increased in oral cancer tissues compared to normal tissues. In addition, we applied t-SNE, which is one of the unsupervised learning, to verify whether normal tissue and oral cancer tissue can be clustered by the derived cell composition. Moreover, we showed that it is possible to predict oral cancer and normal tissue by several supervised classification algorithms. The study would help to improve the understanding of the immune cell infiltration at oral cancer.

Visual analysis of attention-based end-to-end speech recognition (어텐션 기반 엔드투엔드 음성인식 시각화 분석)

  • Lim, Seongmin;Goo, Jahyun;Kim, Hoirin
    • Phonetics and Speech Sciences
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    • v.11 no.1
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    • pp.41-49
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    • 2019
  • An end-to-end speech recognition model consisting of a single integrated neural network model was recently proposed. The end-to-end model does not need several training steps, and its structure is easy to understand. However, it is difficult to understand how the model recognizes speech internally. In this paper, we visualized and analyzed the attention-based end-to-end model to elucidate its internal mechanisms. We compared the acoustic model of the BLSTM-HMM hybrid model with the encoder of the end-to-end model, and visualized them using t-SNE to examine the difference between neural network layers. As a result, we were able to delineate the difference between the acoustic model and the end-to-end model encoder. Additionally, we analyzed the decoder of the end-to-end model from a language model perspective. Finally, we found that improving end-to-end model decoder is necessary to yield higher performance.

Prompt engineering to improve the performance of teaching and learning materials Recommendation of Generative Artificial Intelligence

  • Soo-Hwan Lee;Ki-Sang Song
    • Journal of the Korea Society of Computer and Information
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    • v.28 no.8
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    • pp.195-204
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    • 2023
  • In this study, prompt engineering that improves prompts was explored to improve the performance of teaching and learning materials recommendations using generative artificial intelligence such as GPT and Stable Diffusion. Picture materials were used as the types of teaching and learning materials. To explore the impact of the prompt composition, a Zero-Shot prompt, a prompt containing learning target grade information, a prompt containing learning goals, and a prompt containing both learning target grades and learning goals were designed to collect responses. The collected responses were embedded using Sentence Transformers, dimensionalized to t-SNE, and visualized, and then the relationship between prompts and responses was explored. In addition, each response was clustered using the k-means clustering algorithm, then the adjacent value of the widest cluster was selected as a representative value, imaged using Stable Diffusion, and evaluated by 30 elementary school teachers according to the criteria for evaluating teaching and learning materials. Thirty teachers judged that three of the four picture materials recommended were of educational value, and two of them could be used for actual classes. The prompt that recommended the most valuable picture material appeared as a prompt containing both the target grade and the learning goal.

Study on Dimension Reduction algorithm for unsupervised clustering of the DMR's RF-fingerprinting features (무선단말기 RF-fingerprinting 특징의 비지도 클러스터링을 위한 차원축소 알고리즘 연구)

  • Young-Giu Jung;Hak-Chul Shin;Sun-Phil Nah
    • The Journal of the Institute of Internet, Broadcasting and Communication
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    • v.23 no.3
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    • pp.83-89
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    • 2023
  • The clustering technique using RF fingerprint extracts the characteristic signature of the transmitters which are embedded in the transmission waveforms. The output of the RF-Fingerprint feature extraction algorithm for clustering identical DMR(Digital Mobile Radios) is a high-dimensional feature, typically consisting of 512 or more dimensions. While such high-dimensional features may be effective for the classifiers, they are not suitable to be used as inputs for the clustering algorithms. Therefore, this paper proposes a dimension reduction algorithm that effectively reduces the dimensionality of the multidimensional RF-Fingerprint features while maintaining the fingerprinting characteristics of the DMRs. Additionally, it proposes a clustering algorithm that can effectively cluster the reduced dimensions. The proposed clustering algorithm reduces the multi-dimensional RF-Fingerprint features using t-SNE, based on KL Divergence, and performs clustering using Density Peaks Clustering (DPC). The performance analysis of the DMR clustering algorithm uses a dataset of 3000 samples collected from 10 Motorola XiR and 10 Wintech N-Series DMRs. The results of the RF-Fingerprinting-based clustering algorithm showed the formation of 20 clusters, and all performance metrics including Homogeneity, Completeness, and V-measure, demonstrated a performance of 99.4%.

Analysis of Research Trends Related to drug Repositioning Based on Machine Learning (머신러닝 기반의 신약 재창출 관련 연구 동향 분석)

  • So Yeon Yoo;Gyoo Gun Lim
    • Information Systems Review
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    • v.24 no.1
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    • pp.21-37
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    • 2022
  • Drug repositioning, one of the methods of developing new drugs, is a useful way to discover new indications by allowing drugs that have already been approved for use in people to be used for other purposes. Recently, with the development of machine learning technology, the case of analyzing vast amounts of biological information and using it to develop new drugs is increasing. The use of machine learning technology to drug repositioning will help quickly find effective treatments. Currently, the world is having a difficult time due to a new disease caused by coronavirus (COVID-19), a severe acute respiratory syndrome. Drug repositioning that repurposes drugsthat have already been clinically approved could be an alternative to therapeutics to treat COVID-19 patients. This study intends to examine research trends in the field of drug repositioning using machine learning techniques. In Pub Med, a total of 4,821 papers were collected with the keyword 'Drug Repositioning'using the web scraping technique. After data preprocessing, frequency analysis, LDA-based topic modeling, random forest classification analysis, and prediction performance evaluation were performed on 4,419 papers. Associated words were analyzed based on the Word2vec model, and after reducing the PCA dimension, K-Means clustered to generate labels, and then the structured organization of the literature was visualized using the t-SNE algorithm. Hierarchical clustering was applied to the LDA results and visualized as a heat map. This study identified the research topics related to drug repositioning, and presented a method to derive and visualize meaningful topics from a large amount of literature using a machine learning algorithm. It is expected that it will help to be used as basic data for establishing research or development strategies in the field of drug repositioning in the future.

A Methodology for Realty Time-series Generation Using Generative Adversarial Network (적대적 생성망을 이용한 부동산 시계열 데이터 생성 방안)

  • Ryu, Jae-Pil;Hahn, Chang-Hoon;Shin, Hyun-Joon
    • Journal of the Korea Convergence Society
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    • v.12 no.10
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    • pp.9-17
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    • 2021
  • With the advancement of big data analysis, artificial intelligence, machine learning, etc., data analytics technology has developed to help with optimal decision-making. However, in certain areas, the lack of data restricts the use of these techniques. For example, real estate related data often have a long release cycle because of its recent release or being a non-liquid asset. In order to overcome these limitations, we studied the scalability of the existing time series through the TimeGAN model. A total of 45 time series related to weekly real estate data were collected within the period of 2012 to 2021, and a total of 15 final time series were selected by considering the correlation between the time series. As a result of data expansion through the TimeGAN model for the 15 time series, it was found that the statistical distribution between the real data and the extended data was similar through the PCA and t-SNE visualization algorithms.

Trends in FTA Research of Domestic and International Journal using Paper Abstract Data (초록데이터를 활용한 국내외 FTA 연구동향: 2000-2020)

  • Hee-Young Yoon;Il-Youp Kwak
    • Korea Trade Review
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    • v.45 no.5
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    • pp.37-53
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    • 2020
  • This study aims to provide the implications of research development by comparing domestic and international studies conducted on the subject of FTA. To this end, among the papers written during the period from 2000 to July 23, 2020, papers whose title is searched by FTA (Free Trade Agreement) were selected as research data. In the case of domestic research, 1,944 searches from the Korean Citation Index (KCI) and 970 from the Web of Science and SCOPUS were selected for international research, and the research trend was analyzed through keywords and abstracts. Frequency analysis and word embedding (Word2vec) were used to analyze the data and visualized using t-SNE and Scattertext. The results of the analysis are as follows. First, in the top 30 keywords of domestic and international research, 16 out of 30 were found to be the same. In domestic research, many studies have been conducted to analyze the outcomes or expected effects of countries that have concluded or discussed FTAs with Korea, on the other hand there are diverse range of study subjects in international research. Second, in the word embedding analysis, t-SNE was used to visually represent the research connection of the top 60 keywords. Finally, Scattertext was used to visually indicate which keywords were frequently used in studies from 2000 to 2010, and from 2011 to 2020. This study is the first to draw implications for academic development through abstract and keyword analysis by applying various text mining approaches to the FTA related research papers. Further in-depth research is needed, including collecting a variety of FTA related text data, comparing and analyzing FTA studies in different countries.

A Study in Relationship between Facial Expression and Action Unit (Manifold Learning을 통한 표정과 Action Unit 간의 상관성에 관한 연구)

  • Kim, Sunbin;Kim, Hyeoncheol
    • Proceedings of the Korea Information Processing Society Conference
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    • 2018.10a
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    • pp.763-766
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    • 2018
  • 표정은 사람들 사이에서 감정을 표현하는 강력한 비언어적 수단이다. 표정 인식은 기계학습에서 아주 중요한 분야 중에 하나이다. 표정 인식에 사용되는 기계학습 모델들은 사람 수준의 성능을 보여준다. 하지만 좋은 성능에도 불구하고, 기계학습 모델들은 표정 인식 결과에 대한 근거나 설명을 제공해주지 못한다. 이 연구는 표정 인식의 근거로서 Facial Action Coding Unit(AUs)을 사용하기 위해서 CK+ Dataset을 사용하여 표정 인식을 학습한 Convolutional Neural Network(CNN) 모델이 추출한 특징들을 t-distributed stochastic neighbor embedding(t-SNE)을 사용하여 시각화한 뒤, 인식된 표정과 AUs 사이의 분포의 연관성을 확인하는 연구이다.

Multimodal Supervised Contrastive Learning for Crop Disease Diagnosis (멀티 모달 지도 대조 학습을 이용한 농작물 병해 진단 예측 방법)

  • Hyunseok Lee;Doyeob Yeo;Gyu-Sung Ham;Kanghan Oh
    • IEMEK Journal of Embedded Systems and Applications
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    • v.18 no.6
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    • pp.285-292
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    • 2023
  • With the wide spread of smart farms and the advancements in IoT technology, it is easy to obtain additional data in addition to crop images. Consequently, deep learning-based crop disease diagnosis research utilizing multimodal data has become important. This study proposes a crop disease diagnosis method using multimodal supervised contrastive learning by expanding upon the multimodal self-supervised learning. RandAugment method was used to augment crop image and time series of environment data. These augmented data passed through encoder and projection head for each modality, yielding low-dimensional features. Subsequently, the proposed multimodal supervised contrastive loss helped features from the same class get closer while pushing apart those from different classes. Following this, the pretrained model was fine-tuned for crop disease diagnosis. The visualization of t-SNE result and comparative assessments of crop disease diagnosis performance substantiate that the proposed method has superior performance than multimodal self-supervised learning.

Accuracy of one-step automated orthodontic diagnosis model using a convolutional neural network and lateral cephalogram images with different qualities obtained from nationwide multi-hospitals

  • Yim, Sunjin;Kim, Sungchul;Kim, Inhwan;Park, Jae-Woo;Cho, Jin-Hyoung;Hong, Mihee;Kang, Kyung-Hwa;Kim, Minji;Kim, Su-Jung;Kim, Yoon-Ji;Kim, Young Ho;Lim, Sung-Hoon;Sung, Sang Jin;Kim, Namkug;Baek, Seung-Hak
    • The korean journal of orthodontics
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    • v.52 no.1
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    • pp.3-19
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    • 2022
  • Objective: The purpose of this study was to investigate the accuracy of one-step automated orthodontic diagnosis of skeletodental discrepancies using a convolutional neural network (CNN) and lateral cephalogram images with different qualities from nationwide multi-hospitals. Methods: Among 2,174 lateral cephalograms, 1,993 cephalograms from two hospitals were used for training and internal test sets and 181 cephalograms from eight other hospitals were used for an external test set. They were divided into three classification groups according to anteroposterior skeletal discrepancies (Class I, II, and III), vertical skeletal discrepancies (normodivergent, hypodivergent, and hyperdivergent patterns), and vertical dental discrepancies (normal overbite, deep bite, and open bite) as a gold standard. Pre-trained DenseNet-169 was used as a CNN classifier model. Diagnostic performance was evaluated by receiver operating characteristic (ROC) analysis, t-stochastic neighbor embedding (t-SNE), and gradient-weighted class activation mapping (Grad-CAM). Results: In the ROC analysis, the mean area under the curve and the mean accuracy of all classifications were high with both internal and external test sets (all, > 0.89 and > 0.80). In the t-SNE analysis, our model succeeded in creating good separation between three classification groups. Grad-CAM figures showed differences in the location and size of the focus areas between three classification groups in each diagnosis. Conclusions: Since the accuracy of our model was validated with both internal and external test sets, it shows the possible usefulness of a one-step automated orthodontic diagnosis tool using a CNN model. However, it still needs technical improvement in terms of classifying vertical dental discrepancies.