• Title/Summary/Keyword: suppressive subtractive hybridization

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Identification of the genes which related cold (low temperature) stress in Bombyx mori

  • Kang, Min-Uk;Choi, Kwang-Ho;Park, Kwan-Ho;Nho, Si-Kab
    • International Journal of Industrial Entomology and Biomaterials
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    • v.33 no.2
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    • pp.102-107
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    • 2016
  • Stress may be defined as any modification of environmental parameters that leads to a response by biological organisms. Stresses that affect biolpgical structures may be nonthermal, such as ultraviolet radiation, pH, or salinity, or thermal. Temperture is one of the major stresses that all living organism face. The major effects of cold(low emperature) are decrease of membrane fluidity and the stabilization of secondary structures of RNA and DNA in the cells, which may effect the efficiency of translation, transcription, and DNA replication. In this study, we focus on discovering the genes that are expressed by the cold(low temperature) stress in the silkworm. In cold(low temperature) stress test, we found 100% survive from cold stress at $0^{\circ}C$ up to 12h and $-5^{\circ}C$ up to 2h, and then, survive rate was rapidly decrease in silkworm. Thereafter two whole genes have selected by SSH(Suppression subtractive hybridization). (GenBank accession : GQ149511, GQ338156)

A Toxicogenomic Study to Assess Neurotoxic Mechanism of Methylmercury

  • Kim, Youn-Jung;Yun, Hye-Jung;Jeon, Hee-Kyung;Chai, Young-Gyu;Ryu, Jae-Chun
    • Proceedings of the Korean Society of Toxicology Conference
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    • 2003.10b
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    • pp.130-130
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    • 2003
  • Methylmercury (MeHg) is a well-known neurotoxicant that causes severe damage to the central nervous system in humans. Many reports have shown that MeHg is poisonous to human body through contaminated foods and has released into the environment. Despite many studies on the pathogenesis of MeHg-induced central neuropathy, no useful mechanism of toxicity has been established so far.(omitted)

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A Toxicogenomic Study to Assess Methylmercury-induced Neurotoxicity

  • Kim, Youn-Jung;Yun, Hye-Jung;Ryu, Jae-Chun
    • Proceedings of the Korea Society of Environmental Toocicology Conference
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    • 2003.10a
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    • pp.177-177
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    • 2003
  • Methylmercury (MeHg) is a well-known neurotoxicant that causes severe damage to the central nervous system in humans. Many reports have shown that MeHg is poisonous to human body through contaminated foods and has released into the environment. Despite many studies on the pathogenesis of MeHg-induced central neuropathy, no useful mechanism of toxicity has been established so far. In this study, suppressive subtractive hybridization (SSH) was performed to identify differentially expressed genes on human neuroblastoma cell line, SH-SY5Y treated with DMSO and MeHg (6.25 uM) for 6 hr. Differentially expressed cDNA clones were sequenced and were screened by dot blot to eliminate false positive clones. 13 of 35 screened genes were confirmed using real time RT-PCR. These genes include EB1,90-kDa heat-shock protein, chromosome condensation-related SMC-associated protein and brain peptide Al, etc. Analysis of these genes may provide an insight into the neurotoxic effects of MeHg in human neuronal cells and a possibility to develop more efficient and exact monitoring system of heavy metals as ubiquitous environmental pollutants.

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Characterization of the Genes Involved in Induced Systemic Resistance in Cucumber Plants

  • Kim, Mi-Seong;Cho, Song-Mi;Im, Yang-Ju;Kim, Young-Cheol;Yang, Kwang-Yeol;Lee, Myung-Chul;Kim, Kwang-Sang;Cho, Baik-Ho
    • Korean Journal of Plant Resources
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    • v.20 no.2
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    • pp.216-219
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    • 2007
  • Root colonization by a rhizobacterium, Pseudomonas chlororaphis O6, elicited induced systemic resistance (ISR) in the leaves of cucumber plants against fungal and bacterial pathogens. To understand the role of unique genes during strain O6-mediated ISR, a suppressive subtractive hybridization method was undertaken and led to isolation of twenty-five distinct genes. The transcriptional levels of all the genes showed an increase much earlier under O6 treatment than in water control plants only after challenge with pathogen, while no difference detected on the plants without pathogen challenge. This suggests that O6-mediated ISR is associated with the priming phenomenon, an enhanced capacity for the rapid and effective activation of cellular defense responses after challenge inoculation.