• Title/Summary/Keyword: stable ring

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3D Structure of Bacillus halodurans O-Methyltransferase, a Novel Bacterial O-Methyltransferase by Comparative Homology Modeling

  • Lee, Jee-Young;Lee, Sung-Ah;Kim, Yang-Mee
    • Bulletin of the Korean Chemical Society
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    • v.28 no.6
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    • pp.941-946
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    • 2007
  • Bacillus halodurans O-methyltransferase (BhOMT) is a S-adenosylmethionine (SAM or AdoMet) dependent methyltransferase. Three dimensional structure of the BhOMT bound to S-adenosyl-L-homocysteine (SAH or AdoHcy) has been determined by comparative homology modeling. BhOMT has 40% sequence identity with caffeoyl-CoA 3-O-methyltransferase (CCoAOMT) from alfalfa. Based on x-ray structure of CCoAOMT, three dimensional structure of BhOMT was determined using MODELLER. The substrate binding sites of these two proteins showed slight differences, but these differences were important to characterize the substrate of BhOMT. Automated docking study showed that four flavonoids, quercetin, fisetin, myricetin, and luteolin which have two hydroxyl groups simultaneously at 3'- and 4'-position in the B-ring and structural rigidity of Cring resulting from the double bond characters between C2 and C3, were well docked as ligands of BhOMT. These flavonoids form stable hydrogen bondings with K211, R170, and hydroxyl group at 3'-position in the Bring has stable electrostatic interaction with Ca2+ ion in BhOMT. This study will be helpful to understand the biochemical function of BhOMT as an O-methyltransferase for flavonoids.

$^{13}C-^{1}H$ Coupling Constant as a Criterion for the Presence of $\pi$ Bridging in Substituted 9-Benzonorbornenyl Cation

  • Gweon-Young Ryu;Jung-Hyu Shin
    • Bulletin of the Korean Chemical Society
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    • v.14 no.5
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    • pp.546-548
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    • 1993
  • The discrete structure of substituted 9-benzonorbornenyl cation 3a and 3c was studied using the empirical ${\Delta}$J equation which was developed by Kelly and coworker$^5$. The ${\Delta}$J values of substituted 9-benzonorbornenyl cations were obtained from p-methyl-6,7-dimethyl benzonorbornen-9-yl (3a) and 9-methyl-6,7-dimethyl benzonorbonen-9-yl (3c) cations under stable ion conditions, and were compared with those of the corresponding ketone analog; these cations were generated by dissolving the corresponding carbinols in superacid at -120$^{\circ}$C and the nmr spectra taken at -60$^{\circ}$C~-90$^{\circ}$C. The ${\Delta}$J values are 8.7 Hz for the bridgehead carbons in cation 3c and 3.1 Hz for cation 3b. The ${\Delta}$J values at C5,8 in fused benzene ring are 14.3 Hz for cation 3c and 8.7 Hz for cation 3a. The excellent correlation of the ${\Delta}$J values with 1$^9F$ chemical shifts of p-fluorophenyl-6,7-dimethylbenzonorbornenyl cation (3d) indicate that ${\Delta}$J value is a reliable probe to charge density at adjacent cationic carbon. These NMR parameters strongly support that the symmetrically ${\pi}$-bridged nonclassical structure (type 2) of substituted 9-benzonorbornenyl cations in stable ion conditions.

Correlation of Growth Performance with Total Nitrogen, Carbon and Nitrogen Isotope Compositions in the Xylem of Pinus koraiensis (잣나무 생장과 목질부내의 전질소, 탄소 및 질소 동위원소 조성과의 상관관계)

  • Lee, Wi-Young;Park, Eung-Jun;Han, Sang-Urk
    • Journal of Korean Society of Forest Science
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    • v.99 no.3
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    • pp.353-358
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    • 2010
  • In this study, we investigated the relationship of tree-ring growth with total nitrogen content, and stable carbon and nitrogen isotopes from the core samples of Pinus koraiensis (35-year-old). Annual ring width showed significant positive correlations with the ${\delta}^{13}C$ (P=0.003). The total nitrogen content (P=0.024), and the ${\delta}^{13}C$ content was also correlated with total nitrogen content (P=0.038), indicating that the growth of P. koraiensis was stimulated as the contents of both ${\delta}^{13}C$ and total nitrogen were increased. On the other hand, the less the ${\delta}^{15}N$ content and the C/N ratio were, the larger the annual ring width was. Moreover the families with relatively better growth performance contained the higher levels of ${\delta}^{13}C$ in the xylem compared to other families. These results suggest that the ${\delta}^{13}C$ and total nitrogen contents are the important determinants in the growth performance of P. koraiensis.

Evaluation of Diagnosis Properties of Capacitive Sensor about Deteriorated Pattern of Electrical Insulating Oil (전기 절연유의 열화 패턴에 따른 정전용량형 센서의 열화감지특성 평가)

  • Kim, Ju-Han;Kim, Jae-Hoon;Lee, Won-Yeong;Kim, Pil-Hwan;Han, Sang-Ok;Kim, Han-Jun
    • Proceedings of the KIEE Conference
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    • 2004.07c
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    • pp.1829-1831
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    • 2004
  • This paper described the capacitive sensor for the diagnosis of deterioration of electrical insulating oils applying guard-ring type the 3-terminal electrodes. To measure stable capacitance of the sensor and to determine the design factors of the sensor, we utilized computational analysis, FEM software. This capacitive sensor discern the extent of deterioration measuring relative permittivity of electrical insulating oils. The result of measuring numerous sample, mineral oils, as serviced year, we confirmed an increase in relative permittivity of oils. Moreover, we confirmed the superior characteristics of the sensor as a species, aged pattern of oils and operating temperature.

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Ultrashort Optical Pulse Generation at 10 GHz by Pulse Compression of Actively Mode-Locked Fiber Laser Output (능동 모드잠금 광섬유 레이저 출력의 펄스 압축에 의한 10 GHz 극초단 광 펄스 발생)

  • Seo, Dong-Sun;Weiner, Andrew M.
    • Journal of IKEEE
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    • v.9 no.2 s.17
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    • pp.115-122
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    • 2005
  • We report 400 femto-second highly stable, nearly transform-limited, pulse generation at 10 GHz in $1540{\sim}1550$ nm wavelength region by adiabatic soliton pulse compression of an actively mode-locked fiber ring laser output. Without using any supermode selection device, supermode beating noise has been suppressed below -123 dB/Hz, resulting less than 100 femto-second timing jitters at the noise band of $1\;kHz{\sim}100\;MHz$.

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Determination of Biosynthetic Pathway of Decursin in Hairy Root Culture of Angelica gigas

  • Ji, Xiuhong;Huh, Bum;Kim, Soo-Un
    • Applied Biological Chemistry
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    • v.51 no.4
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    • pp.258-262
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    • 2008
  • To establish the biosynthetic pathway of decursin in Angelica gigas Nakai, feeding experiment with stable isotope-labeled precursors were conducted. Umbelliferone and decursin were labeled with deuterium at C-3. The umbelliferone, the decursin, and other commercially available putative precursors, L-phenylalanine-ring-$d_5$ and trans-cinnamic acid-$d_7$, were fed to the hairy root culture of A. gigas. Each deuterated compound was incorporated into decursinol, decursinol angelate, and decursin as determined by mass spectrometric analysis. These findings confirmed the coumarin biosynthesis pathway sequence is composed of phenylalanine, cinnamic acid, umbelliferone, decursinol, and decursin.

Kinetics of the Formation of Metalloporphyrins and the Catalytic Effect of Lead Ions and Hydrogen Ions

  • Qi, Yong;Pan, Ji Gang
    • Bulletin of the Korean Chemical Society
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    • v.35 no.11
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    • pp.3313-3318
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    • 2014
  • The reaction mechanism of Lead ions catalyzing complexation reactions between TIPP and metal ions was investigated by researching the kinetics of the formation of metalloporphyrins by UV/Vis-spectra, and verified by exploring the formation of metalloporphyrins catalyzed by acetic acid. Kinetics studies suggested that the fluctuations of reaction rate indicated the formation of metalloporphyrin was step-wise, including the pre-equilibrium step (the coordination of the pyrrolenine nitrogens to $Mn^+$) and the rate-controlling step (the deprotonation of the pyrrole proton). In the pre-equalization step, a sitting-atop (SAT) structure formed first with the complexation between larger radius of $Pb^{2+}$ and TIPP, changed the activation, then $Pb^{2+}$ left with the smaller radius of metal ions attacking from the back of the porphyrin ring center. In the rate-controlling step, two pyrrole protons dissociated to restore a stable structure. This was verified by adding acetic acid at different reaction times.

Lorentz Force Type Self-Bearing Motor with 2-Pole Flux Distribution for Levitation and 4-Pole for Rotation (부상용 2극과 회전용 4극 자속 분포를 갖는 로렌쯔형 자기 부상 모터)

  • ;Yohji Okada
    • Proceedings of the Korean Society for Noise and Vibration Engineering Conference
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    • 2001.11a
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    • pp.482-487
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    • 2001
  • This paper introduces a Lorentz force type four-pole self-bearing motor, where the new pole arrangement of a stator is intended to function both as a synchronous PM motor and as a magnetic bearing. The Lorentz force type has some good points such as linearity of control force, freedom from flux saturation, and high efficiency unlike conventional self-bearing motors. Mathematical expressions of torque and radial force are derived to show that they can be separately controlled regardless of rotational speed and time. To verify the proposed theory, a prototype is made, where a ring-shape outer is actively controlled in two radial directions while the other motions are passively stable supposing the radial stability. Through some experiments, it is shown that the proposed scheme can provide high capability and feasibility for a small high-speed self-bearing motor.

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Analysis on the Diagnosis Characteristics of Electrical Insulating Oil for Power Transformer with 3-terminal Capacitive Sensor (3전극형 전기용량 센서를 이용한 변압기 절연유의 열화감지특성 평가)

  • Kim, Ju-Han;Seo, Pan-Seok;Kim, Pil-Hwan;Kim, Myung-Hwan;Park, Hung-Seok;Han, Sang-Ok
    • Proceedings of the KIEE Conference
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    • 2004.11d
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    • pp.89-92
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    • 2004
  • This paper described the capacitive sensor for the diagnosis of deterioration of electrical insulating oils applying guard-ring type the 3-terminal electrodes. To measure stable capacitance of the sensor and to determine the design factors of the sensor, we utilized computational analysis, FEM software. This capacitive sensor discern the extent of deterioration measuring relative permittivity of electrical insulating oils. The result of measuring numerous sample, mineral oils, as serviced year, we confirmed an increase in relative permittivity of oils. Moreover, we confirmed the superior characteristics of the sensor as a species, aged pattern of oils and operating temperature.

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MO Studies of Configuration and Conformation (Ⅳ). Conformations of N-Acetyl Pyrrolidone and Its Protonated Form (배치와 형태에 관한 분자궤도함수론적 연구 (제4보). N-아세틸피롤리돈과 그 양성자 부가물의 형태에 관한 연구)

  • Ikchoon Lee;Suk Kee Lee;Shi Choon Kim;Young Gu Jeon
    • Journal of the Korean Chemical Society
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    • v.22 no.2
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    • pp.55-61
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    • 1978
  • MO theoretical studies on the conformations of N-acetylpyrrolidone and its protonated form were carried out by the EHT and CNDO/2 methods. According to our calculated results, the heavy atom skeleton of this molecule is planar, and the trans-trans planar conformation is more stable than cis-trans. The protonation occurs most readily on the ring carbonyl oxygen. These results were interpreted in terms of conjugative, electrostatic and steric effect.

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