• Title/Summary/Keyword: soil samples

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Isolation and Identification of Methylotrophic Actinomycetes capable of Producing Anti-oral Cancer Activity (구강암에 대해 항암효과를 나타내는 methanol 자화 방선균의 분리 및 동정)

  • Kim, Jung;Kim, Sun-Sook
    • Journal of Korean society of Dental Hygiene
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    • v.1 no.2
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    • pp.193-200
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    • 2001
  • An appropriate amount of samples, collected from three each paddy forest, field and riverside soil near Taegu city, was suspended in sterile water and then diluted in order to isolation of antagonistic to oral cancer. The diluted samples were inoculated on separating medium in the routing spreading method. So, seven hundred and eighteen strains were isolated on HV agar and 220 strains were on methanol medium from soil samples. So, during the screening of anti-oral cancer activity from soil, we isolated microorganisms showing powerful antagonistic activity. Among them, No. 78 strain exhibited the most strongly anti-oral cancer activity. Microbiological properties were investigated by the methods described in the Bergey's Manual of Systematic Bacteriology and experimental methods of identification of actinomycetes by Hamada et al. As a result, a methylotrophic actinomycetes strain No. 79 was estimated as Amycolatopsis sp. based on taxonomic studies.

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A Study on the Physical Characteristics of Soil-Cement (Soil-Cement의 물리적 성질에 관한 연구)

  • 조진구
    • Magazine of the Korean Society of Agricultural Engineers
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    • v.16 no.3
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    • pp.3533-3538
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    • 1974
  • This study was attempted in order to search for physical properties of sail cement. In this study, soil samples were specified according to soil particle analysis and used for compaction, strength, abrasion, absorption tests respectively according to different cement contents. Cement content sused in each treatment were 6%, 8%, 10% and 12% of total weight of soil-consent mixture. In the test, compressise strengths of the specimens were measured at the following ages; 3 days, 7-days, 14-days, 21-days and 28-days. Abrasion and absorption tests of the specimens were carried out at the 7-days age only. The results obtained from the tests are summarized as follows; 1. As the cement contents were in creased, the compressive strengths of soil-cement were almost proportionally increased. 2. The Compressive strength of soil-cement was not always proporportional to ages. The gradient of compressive strength of the soil-cement was steeper as the cement content was rucreased. 3. As the cement content was increased, the amount of the weight loss of the samples due to the abrasion was decreased remarkably, giving no abrasion for about 8% of the cement content. 4. As the cement content was increased, the absorption ratio of the specimens was not changed remarkably.

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Applicability of biocementation for organic soil and its effect on permeability

  • Sidik, Waleed S.;Canakci, Hanifi;Kilic, Ibrahim H.;Celik, Fatih
    • Geomechanics and Engineering
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    • v.7 no.6
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    • pp.649-663
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    • 2014
  • In past few years, the use of bacterial calcium carbonate precipitation (biocementation) has become popular as a ground improvement technique for sandy soil. However, this technique was not applied to organic soil. This study focused on bacterial calcium carbonate precipitation and its effect on permeability in organic soil. A special injection system was prepared for inducing bacterial solution to the samples. The bacterial solution supplied to the samples by gravity for 4 days in specific molds designed for this work. Calcite precipitation was observed by monitoring pH value and measuring amount of calcium carbonate. Change in the permeability was measured before and after biocementation. The test results showed that the pH values indicates that the treatment medium is appropriate for calcite precipitation, and amount of precipitated calcium carbonate in organic soil increased about 20% from untreated one. It was also found that the biocementation can be considered as an effective method for reducing permeability of organic soil. The results were supported by Scanning electron microscopy (SEM) analysis and energy-dispersive x-ray (EDX) analysis.

Novel Detection Protocol for Erwinia amylovora in Orchard Soil after Removal of Infected Trees

  • Sujin Song;Byeori Kim;Kwang-Pyo Kim;Eunjung Roh
    • The Plant Pathology Journal
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    • v.40 no.3
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    • pp.282-289
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    • 2024
  • Fire blight is a bacterial disease caused by Erwinia amylovora. In Korea, fire blight was first reported in 2015 in an orchard. If the infection is confirmed, all trees in the orchard must be removed and the orchard must remain closed for 3 years. Since 2020, if the number of trees infected with fire blight is less than 5% of the total trees in the orchard, only the infected tree and adjacent trees are removed in Korea. Three years after removal, the trees can be replanted after confirming that the orchard soil is free from E. amylovora. In this study, a protocol was established for detecting E. amylovora in soil via selective enrichment, using tryptic soy broth with 0.05% bile salts and 50 ㎍/ml cycloheximide, and real-time polymerase chain reaction. This protocol resulted in a 1,000-times improved detection limit for E. amylovora in soil samples compared to that in unenriched samples. Soil monitoring was performed for orchards where fire blight-infected trees had been removed 3-27 months prior; the selected orchards were monitored every 3 months. Monitoring confirmed that E. amylovora was not present in the soil at any site in any of the orchards. A new detection protocol facilitates the monitoring of E. amylovora in soil and could help permit the replanting of trees in orchards. Also monitoring results provide evidence that trees can be planted earlier.

Evaluation of Almaty City Soil's Toxicity by the Representatives of the Microflora and Microfauna

  • Mynbayeva, Bakhyt N.;Esimov, Bolat K.
    • Korean Journal of Environmental Biology
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    • v.29 no.3
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    • pp.208-211
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    • 2011
  • The lowest amount of heavy metals was found outside the city (25 km away), the highest amount was found near the thermoelectric power plant, and the average amount was discovered in the central part of the city. The presence of heavy metals in soil samples resulted in reduction of several important soil characteristics (pH, humus content, soil "breathing"). Use of simple and quick methods to examine soil with high heavy metals pollution resulted in the discovery of a pedobiota group, consisting of nematodes, fungi (genus Fusarium) and Protozoa which indicated the toxicity of the Almaty city soils.

Concentration Distribution of PCBs in Soil Around Industrial Complex and Relationship with PCBs Sources (공단지역 주변 토양 중 PCBs 농도분포 및 발생원 추정에 관한 연구)

  • Park, Seok-Un;Kim, Kyoung-Soo;Kim, Jong-Guk
    • Journal of Korean Society of Environmental Engineers
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    • v.29 no.5
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    • pp.521-527
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    • 2007
  • To investigate the relationship between PCB sources and concentration level in soil, PCBs concentration of 8 soil samples around Shiwa industrial complex were measured. The concentration of PCBs in soil samples were ranged from 2.43 to 274 ng/g dry (0.116 to 60.5 pg WHO-TEQ/g dry) md off-gas were ranged from 48.6 to $2872ng/m^3(0.00150\sim15.2ng\;WHO-TEQ/m^3)$; these are similar levels with results of previous study in Korea. The homologue patterns in soil samples were varied from sample to sample, but isomer patterns were very similar with each other. The two principal components were extracted by Principal Component Analysis(PCA) of 8 soil samples and cumulative factor loading was 95.7%. As the result of PCA, it could be expected that PCBs in soil samples of this study were more affected by PCB products than combustion process and mostly affected by already-known sources.

Persistence of Salmonella enterica, Escherichia coli O157:H7, and Listeria monocytogenes in Soil, Liquid Manure Amended Soil, and Liquid Manure

  • Jung, Kyu-Seok;Kim, Min-Ha;Heu, Sung-Gi;Roh, Eun-Jung;Lee, Dong-Hwan;Lim, Jeong-A;Ryu, Jae-Gee;Kim, Kye-Hoon
    • Korean Journal of Soil Science and Fertilizer
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    • v.47 no.6
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    • pp.432-436
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    • 2014
  • While searching for healthier diets, people became more attentive to agricultural organic products. However, organic foods may be more susceptible to microbiological contamination because of the use of livestock manure compost and liquid manure, potential sources of pathogenic bacteria. This study was undertaken to investigate the persistence of Salmonella enterica, Escherichia coli O157:H7, and Listeria monocytogenes in soil, liquid manure amended soil, and liquid manure. Loamy soil, liquid manure amended soil, and liquid manure were inoculated with S. enterica, E. coli O157:H7, and L. monocytogenes. Samples were incubated in consistent moisture content at $25^{\circ}C$. Samples had been periodically collected during 120 days depending on the given conditions. S. enterica and E. coli O157:H7 survived over 120 days in loamy soil and over 60 days in liquid manure amended soil, respectively. L. monocytogenes decreased faster than other pathogens in soil. S. enterica, E. coli O157:H7, and L. monocytogenes survived for up to 5 days in liquid manure. S. enterica and E. coli O157:H7 in soil decreased by 2 to $2.5log\;CFU\;g^{-1}$ for 120 days. S. enterica and E. coli O157:H7 in liquid manure amended soil decreased slowly for 21 days. However, S. enterica, E. coli O157:H7, and L. monocytogenes sharply decreased after 21 days. S. enterica, E. coli O157:H7, and L. monocytogenes in soil increased by 0.5 to $1.0log\;CFU\;g^{-1}$ for 7 days. Foodborne pathogens in soil and liquid manure amended soil gradually decreased over time.

Basic study on the biological and physicochemical properties of burnt forest soil for the ecological restoration by organic waste (유기성폐자원을 이용한 산불토양의 생태학적 복원을 위한 토양의 생물학적, 물리화학적 기초특성연구)

  • Jung, Young-Ryul;Song, In-Geun;Kim, Young-Jun
    • Journal of the Korea Organic Resources Recycling Association
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    • v.13 no.1
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    • pp.79-89
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    • 2005
  • Forest soils were analyzed on their biological and physicochemical properties for the ecological restoration of burnt forest soil using organic wastes and proper microorganisms. Three kinds of soil samples were collected from undamaged soil(US), naturally restoring soil(NS) and artificially restoring soil(AS). All soil samples were sandy soil and acidic soil, ranged pH 5.34~5.78. Moisture content was higher in the soil of NS region. And the others were similar. Total organic matter and soluble sugar were higher at the surface, generally. Heterotrophic soil microbes were abundant at the surface soil of NS and subsoil of AS. Dehydrogenase, cellulase and phosphatase activities were higher at the NS soil. Especially, Dehydrogenase activity as primary index of soil microbial process showed high correlationship with moisture content(r=0.90, P < 0.05).

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Use of NIR Soil Analyzer for Measuring Chemical Properties of Field Soil (근적외 토앙분석기를 이용한 토양의 이화학적 성질분석)

  • Ryu, Kwan-Shig;Cho, Rae-Kwang;Park, Woo-Churl;Kim, Bok-Jin
    • Korean Journal of Soil Science and Fertilizer
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    • v.34 no.4
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    • pp.278-283
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    • 2001
  • The overall objective of this research was to show a NIR soil analyzer assessing soil fertility by measuring soil properties rapidly. A total of 140 soil samples were used to obtain calibrations and validation estimating soil properties. The soil samples were ground to pass 0.2mm sieve openings. Partial least square regression analysis was used to develop a calibration for soil analysis. The results indicated that NIR soil analyzer could be used as a routine method for quantitatively determining pH, OM, total nitrogen, CEC, extractable Ca, Mg, K, available $SiO_2$ and soil moisture simultaneously within one minute. Therefore, the NIR soil analyzer may be suitable for quick estimation of soil fertility estimation in fertilizer assessments.

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Soil properties and molecular compositions of soil organic matter in four different Arctic regions

  • Sujeong, Jeong;Sungjin, Nam;Ji Young, Jung
    • Journal of Ecology and Environment
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    • v.46 no.4
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    • pp.282-291
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    • 2022
  • Background: The Arctic permafrost stores enormous amount of carbon (C), about one third of global C stocks. However, drastically increasing temperature in the Arctic makes the stable frozen C stock vulnerable to microbial decomposition. The released carbon dioxide from permafrost can cause accelerating C feedback to the atmosphere. Soil organic matter (SOM) composition would be the basic information to project the trajectory of C under rapidly changing climate. However, not many studies on SOM characterization have been done compared to quantification of SOM stocks. Thus, the purpose of our study is to determine soil properties and molecular compositions of SOM in four different Arctic regions. We collected soils in different soil layers from 1) Cambridge Bay, Canada, 2) Council, Alaska, USA, 3) Svalbard, Norway, and 4) Zackenberg, Greenland. The basic soil properties were measured, and the molecular composition of SOM was analyzed through pyrolysis-gas chromatography/mass spectrometry (py-GC/MS). Results: The Oi layer of soil in Council, Alaska showed the lowest soil pH and the highest electrical conductivity (EC) and SOM content. All soils in each site showed increasing pH and decreasing SOC and EC values with soil depth. Since the Council site was moist acidic tundra compared to other three dry tundra sites, soil properties were distinct from the others: high SOM and EC, and low pH. Through the py-GC/MS analysis, a total of 117 pyrolysis products were detected from 32 soil samples of four different Arctic soils. The first two-axis of the PCA explained 38% of sample variation. While short- and mid-hydrocarbons were associated with mineral layers, lignins and polysaccharides were linked to organic layers of Alaska and Cambridge Bay soil. Conclusions: We conclude that the py-GC/MS results separated soil samples mainly based on the origin of SOM (plants- or microbially-derived). This molecular characteristics of SOM can play a role of controlling SOM degradation to warming. Thus, it should be further investigated how the SOM molecular characteristics have impacts on SOM dynamics through additional laboratory incubation studies and microbial decomposition measurements in the field.