• Journal of Oral Medicine and Pain
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• 제47권1호
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• pp.10-26
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• 2022

Purpose: The purpose of this study was to investigate whether various saliva collection methods affect the observed salivary microbiome and whether microbiomes of stimulated and unstimulated saliva and plaque differ in richness and diversity. Methods: Seven sampling methods for unstimulated saliva, stimulated saliva, and plaque samples were applied to six orally and systemically healthy participants. Bacterial 16S ribosomal RNA genes of 10 major oral bacterial species, namely, Aggregatibacter actinomycetemcomitans, Porphyromonas gingivalis, Tannerella forsythia, Treponema denticola, Fusobacterium nucleatum, Prevotella intermedia, Prevotella nigrescens, Streptococcus mitis, Streptococcus sobrinus, and Lactobacillus casei, were analyzed by real-time polymerase chain reaction. We comprehensively examined the dependence of the amount of bacterial ribosomal DNA (rDNA), bacterial-community composition, and relative abundance of each species on sample collection methods. Results: There were significant differences in the bacterial rDNA copy number depending on the collection method in three species: F. nucleatum, P. nigrescens, and S. mitis. The species with the highest richness was S. mitis, with the range from 89.31% to 100.00%, followed by F. nucleatum, P. nigrescens, T. denticola, T. forsythia, and P. intermedia, and the sum of the proportions of the remaining five species was less than 1%. The species with the lowest observed richness was P. gingivalis (<0.1%). The Shannon diversity index was the highest in unstimulated saliva collected with a funnel (4.449). The Shannon diversity index was higher in plaque samples (3.623) than in unstimulated (3.171) and stimulated (3.129) saliva and in mouthwash saliva samples (2.061). Conclusions: The oral microbial profile of saliva samples can be affected by sample collection methods, and saliva differs from plaque in the microbiome. An easy and rapid technique for saliva collection is desirable; however, observed microbial-community composition may more accurately reflect the actual microbiome when unstimulated saliva is assayed.

• 생명과학회지
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• 제28권1호
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• pp.105-109
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• 2018

생물다양성은 생존하는 유기체들의 변이성으로 정의하며 지구상의 생물의 다양성과 생태계를 구성하는 복잡한 상호작용을 일컫는다. 본 연구는 합천군 덕진천에 서식하는 동물의 종조성과 다양성을 공간적 시간적 양상으로 실시하였다. 2016년 시즌에 동정된 포유류, 연골어류, 경골어류, 조류, 양서류, 파충류, 어류 종의 수는 55분류군이었다. 포유류의 Berger-Parker's index (BPI)는 0.233(지점 A)에서 0.333(지점 D)로 나타났다. 포유류와 조류에 대한 Shannon-Weaver index (H')와 두 다른 다양성 척도(N1과 N2)는 상류지역이 하류 지역보다 높았다. 동물 분류군에 대한 ${\beta}$-다양성은 어류 0.229에서 무척추동물 0.339까지 나타났다. 동물종에 대한 풍부도 지수는 지점과 시기에 따라 변화가 있었다. 지점 A는 포유류, 조류, 양서/파충류에서 높은 풍부도를 나타내었다. 비록 다섯 동물 강에 대한 풍부도 지수(R1, R2)가 시즌 별로 다르지만 유의성을 나타내지는 않았다. 균등도 지수(E1-E5) 역시 시즌 별로 다르지만 유의성을 나타내지는 않았다.

• Journal of Forest and Environmental Science
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• 제27권1호
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• pp.1-15
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• 2011

The present study was undertaken in middle altitudinal (1500 to 2500 masl) moist temperate forest of Mandal-Chopta area in the Garhwal region of Uttarakhand, India. The aim of the present study was to assess the variation in species composition and diversity in different vegetation layers viz. herb, shrub and tree, at different altitudes. Shannon-Wiener diversity index ($\bar{H}$), $Nha^{-1}$, total basal cover per hectare (G), Simpson concentration of dominance, Pielou Equitability, species richness (SR), Margalef index, Menheink index of species richness and ${\beta}$-diversity were calculated to understand community composition. Tree G ranged from 84.25 to 35.08 $m^2ha^{-1}$ and total stem density varied from 990 to 1470 Nha-1. Total SR (herb, shrub and trees) among different forest types ranged between 31 and 58. Maximum G of herb and shrub layers was recorded at lower altitudes between 1500 and 1650 masl. ${\beta}$-diversity was higher in herb layers as compared to tree and shrub layers. Dominance-diversity curves were also drawn to ascertain resource apportionment among various species in different forest types. Values of species diversity, $\bar{H}$, $Nha^{-1}$ and G were higher in the study area as compared to similar forests growing in other parts of Uttarakhand Himalaya.

• 한국해양바이오학회지
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• 제13권2호
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• pp.66-75
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• 2021

In 2014, fishes caught using stow nets in coastal waters off Gochang from May to October were assessed for appearance patterns. The fishes were caught at four research stations (St.) and were found to comprise 37 species, 18 families, and 7 orders. The dominant species were Thryssa kammalensis, Setipinna tenuifilis, and Sardinella zunasi. To gain a measure of their biodiversity, all species were assessed for their number, richness, diversity, evenness, and dominance. The highest and lowest numbers of total fishes caught were recorded in September (4,819 individuals) and October (828 individuals), respectively. The diversity was the highest in October (H' = 2.478) and lowest in June (H' = 0.880). The evenness index was the highest in October (E = 0.780) and lowest in June (E = 0.343). The richness index was the highest in October (R = 3.424) and lowest in May (R = 1.552). Finally, the dominance index was the highest in June (D = 86.2%) and lowest in October (D = 40.3%).

• Proceedings of the National Institute of Ecology of the Republic of Korea
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• 제2권3호
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• pp.144-152
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• 2021

Sanankerto is one of pilot projects for tourism villages in Indonesia due to its natural tourism potential with a 24-ha bamboo forest located in Boon Pring Andeman area. However, the distribution of existing bamboo has never been identified or mapped. Thus, the mana gement is facing difficulty in planning and developing tourism potential as well as spatial management in the area. Therefore, the objectives of this study were to identify and analyze the structure of bamboo vegetation in the Boon Pring Tourism village an d to perform vegetation mapping. The type of research was descriptive exploratory with a cluster sampling technique (i.e., a two-stage cluster) covering an area of ± 10 ha. Bamboo vegetation analysis was performed by calculating diversity index (H'), evenness index (E), and Species Richness index (R). Data were collected through observation and interviews with local people and the manager to determine zonation division. Mapping of bamboo vegetation based on zoning was processed into thematic maps using ArcG is 10.3. Micro climatic factors were measured with three replications for each sub -cluster. Data were analyzed descriptively and quantitatively. Nine species of bamboo identified. Diversity, evenness, and species richness indices differed at each location. Activities of local communities, tourists, and manager determined the presence, number, and distribution of bamboo species. These bamboo distribution maps in three zoning (utilization, buffer, and core) can be used by manager for planning and developing natural tourism potential.

• 수산해양기술연구
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• 제50권4호
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• pp.530-541
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• 2014

The dredge gear is dragged along the bottom of the sea to catch targeted edible bottom dwelling species. Species composition and ecological index of the catches of dredge were estimated around Gangneung coastal fishing ground by dredge with different mesh size and tooth space from July to December 2013. Eight different types of dredge including four different tooth space (24.7 mm, 29.9 mm, 34.9 mm, 40.1 mm) and four different mesh size(15.5 mm, 32.7 mm, 51.1 mm, 60.0 mm) were used in the experiment. During the experiment, total catches were collected 31 species as sipunculida 1 species, mollusca 13 species, annelida 3 species, arthropoda 8 species, echinodermata 4 species and others 2 species. The dominant genus were mollusca and echinodermata while the dominant species were Megangulus venulosus, Pseudocardium sachalinensis, Schaphechinus brevis. The richness index was ranged 1.29-1.72, evenness index was 0.6-0.65 and diversity index was 1.65-1.83 according to the tooth space and mesh size of dredge. Richness index, diversity index were high at tooth space 34.9 mm dredge and ecological index showed decreasing tendency with the increasing of mesh size of dredge. Cluster and MDS analysis, based on a Bray-Curtis and similarity matrix of fourth root transformed data of number of species and wet weight, showed division into four different groups as four different tooth space (Group A), four different mesh size Group B (51.1 mm, 60.0 mm), Group C (32.7 mm) and Group D (15.5 mm).

• 수산해양기술연구
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• 제50권4호
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• pp.633-642
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• 2014

Monthly variation in abundance and species composition of the fishes were investigated based on specimens collected by gill net in coastal water of Yeosu from October, 2009 and February, May, August, 2010. The collected fishes were 1,529 individuals (183,840g) of the total, identified into 6 orders, 16 families and 24 species. The most dominant order fish was Perciformes comprised 9 species, 7 families, and followed Pleuronectiformes comprised 5 species, 3 families, Scorpaeniformes comprised 5 species, 2 families. These 3 orders constituted 81.1% of the total collected fish. During the study, most dominant species was Hexagrammos otakii accounted for 189 individuals (12.4%) of the total, followed by Lateolabrax japonicus 165 individuals (10.8%), Hexagrammos agrammus 154 individuals (10.0%). The fish was collected by a gill net in coastal water of Yeosu from October, 2009 and February, May, August, 2010, the diversity index of the fishes was 2.09~2.66, which was the highest in August, 2010 and the lowest in February, 2010. The evenness index of them was 0.84~0.89, which was the highest in August, 2010 and the lowest in February, 2010 and the richness index of them was 2.02~3.14, which was the highest in October, 2009 and the lowest in February, 2010. The analyzed species diversity index by the each stations was 2.47~2.66 and the evenness index was 0.84~0.90 and the richness index 2.99~3.37. The similarity of community structure per season was very high which was the least in spring and fall. In addition, the community structure was very similar in state 3 and 2 out of each stations.

• 한국환경과학회지
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• 제27권6호
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• pp.383-399
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• 2018

In the present study, the community distribution, functional feeding groups, and habitat groups of the benthic macroinvertebrates from Gayasan National Park were investigated at eight different sites from 2015 to 2016. The correlation between habitat altitude and each group type was analyzed statistically. Biodiversity indices, including dominance, diversity, richness, and evenness indices, were calculated. The results showed a total of 4,216 individual benthic macroinvertebrates were collected, including 4 phyla, 6 classes, 16 orders, 40 families, and 100 species. Gammarus sobaegensis was dominant with 0.141% dominance, and the subdominant species was Epeorus nipponicus with 0.088% dominance. The EPT group(Ephemeroptera, Plecoptera and Tricoptera) accounted for 71.00% of the total species and 67.69% of the total individuals. The number of scraper species was highest, and the number of gathering collector individuals was highest among functional feeding groups. The individual number of scrapers(r=-0.358, p < 0.05) and gathering collectors(r=-0.343, p < 0.05) decreased with increasing altitude. The numbers of species and individuals of clingers and sprawlers were highest among the habitat groups. The individual number of clingers(r=-0.547, p < 0.01) and burrowers(r=-0.331, p < 0.05) significantly decreased with increasing altitude. The diversity and richness indices were higher in St. 3 than in the other sites. The dominance index was highest in St. 2, and the evenness index was highest in St. 7. We evaluated the biological water quality with several known methods, and concluded that ESB(Ecological score of benthic macrovertebrates community) and GPI(Group polution index) were more suitable than KSI(Korean saprobic index) and BMI (Benthic macrovertebrate index) to assess the biological water quality of Gayasan mountain stream water.

• 아시안잔디학회지
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• 제19권1호
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• pp.47-55
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• 2005

2004년 8월부터 10월까지 경북 상주의 갑장산에서 고도별에 따른 지표서식 딱정벌레의 군집을 조사하였다. 전 조사지에서 4과 15종 1,439개체의 지표서식 딱정벌레가 채집되었다. 월별 다양성은 9월에 12종 697개에가 채집이 되어 가장 높았으며, 8월에 8종 102개체, 10월에 5종 640개체가 채집이 되었다. 해발 800m 지역은 다양도지수와 균등도지수가 가장 낮게 나타났으며 풍부도지수는 가장 높게 나타났다. 풍부도지수는 해발 400m 지역에서 가장 높게 나타났으며 균등도지수는 해발300m 지역에서 가장 높게 나타났다. 붉은칠납작먼지벌레(Synuchus cycloderus)는 해발 300-800m 지역에서 우점종이었으며 윤납작먼지벌레(Synuchus nitidus)는 해발 200m 지역에서 우점종이었다. 본 조사 결과를 바탕으로 산림지역 내에 건설 된 골프장에서는 붉은칠납작먼지벌레와 윤납작먼지벌레를 환경 지표종으로 이용할 수 있을 것으로 생각된다.

• 환경생물
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• 제28권1호
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• pp.1-7
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• 2010

Small wetlands in an upland matrix can support diverse vegetation composition that increase both local and regional species richness. In this study we characterize the full range of wetland vegetation in an upland forest landscape at Dumyeong-ri, Gijang-gun, Busan. This wetland index can be calculated with species data, or with community type data as performed. Classified community types were used to describe vegetation at three wetlands and adjacent areas. The communities contained 28 species of vascular plants and 28 species were identified four plant community types. The Pinus densiflora type was dominated by Pinus densiflora and contained only four species. None of the plots had high proportion of standing water. The Carpinus laxiflora type had high obligate upland species (OU) and facultative upland species (FU). The Rhododendron mucronulatum type grew in over half of the plots included Pinus densiflora and Alnus japonica. Some species bother swampy areas adjacent to site C. The Miscanthus sacchariflorus type consisted of seasonal wetlands. The three sites contained nine species with the strongest indicator species being Miscanthus sinensis var. purpurascens, Miscanthus sinensis, Echinochloa crus-galli, and Sagittaria aginashi. This type had the highest proportions of obligate wetland species. Plant species richness averaged 5.069. Shannon-Weaver index of diversity also varied among the community types (F=22.7, df=4, 115), with the types FU having significantly higher value (2.746) than the others (1.057 for type FW and 1.600 for type OU). Regional plans including all of the diverse types of wetland vegetation in upland forests will contribute substantially to the conservation of plant diversity.