• 제목/요약/키워드: rhizosphere environment

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Rhizospheric fungi of Panax notoginseng: diversity and antagonism to host phytopathogens

  • Miao, Cui-Ping;Mi, Qi-Li;Qiao, Xin-Guo;Zheng, You-Kun;Chen, You-Wei;Xu, Li-Hua;Guan, Hui-Lin;Zhao, Li-Xing
    • Journal of Ginseng Research
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    • 제40권2호
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    • pp.127-134
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    • 2016
  • Background: Rhizospheric fungi play an essential role in the plantesoil ecosystem, affecting plant growth and health. In this study, we evaluated the fungal diversity in the rhizosphere soil of 2-yr-old healthy Panax notoginseng cultivated in Wenshan, China. Methods: Culture-independent Illumina MiSeq and culture-dependent techniques, combining molecular and morphological characteristics, were used to analyze the rhizospheric fungal diversity. A diffusion test was used to challenge the phytopathogens of P. notoginseng. Results: A total of 16,130 paired-end reads of the nuclear ribosomal internal transcribed spacer 2 were generated and clustered into 860 operational taxonomic units at 97% sequence similarity. All the operational taxonomic units were assigned to five phyla and 79 genera. Zygomycota (46.2%) and Ascomycota (37.8%) were the dominant taxa; Mortierella and unclassified Mortierellales accounted for a large proportion (44.9%) at genus level. The relative abundance of Fusarium and Phoma sequenceswas high, accounting for 12.9% and 5.5%, respectively. In total,113 fungal isolates were isolated from rhizosphere soil. They were assigned to five classes, eight orders (except for an Incertae sedis), 26 genera, and 43 species based on morphological characteristics and phylogenetic analysis of the internal transcribed spacer. Fusarium was the most isolated genus with six species (24 isolates, 21.2%). The abundance of Phoma was also relatively high (8.0%). Thirteen isolates displayed antimicrobial activity against at least one test fungus. Conclusion: Our results suggest that diverse fungi including potential pathogenic ones exist in the rhizosphere soil of 2-yr-old P. notoginseng and that antagonistic isolates may be useful for biological control of pathogens.

Effects of Rhizosphere Microorganisms and Wood Vinegar Mixtures on Rice Growth and Soil Properties

  • Jeong, Kang Wook;Kim, Bo Sung;Ultra, Venecio U. Jr.;Chul, Sang
    • 한국작물학회지
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    • 제60권3호
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    • pp.355-365
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    • 2015
  • Environment-friendly growth enhancers for rice are being promoted to reverse the negative impact of intensive chemical-based and conventional rice farming on yield sustainability and environmental problems. Several rhizosphere microorganisms and pyroligneous acids (PA) had demonstrated beneficial influence on growth, yield and grain quality of rice. Since most of the previous study had evaluated the effect of PGPR and PA on paddy rice singly, the effect of combined application of these on the growth and yield of paddy rice and on some soil chemical properties were determined. A four factorial pot experiment was conducted to evaluate the effect of PGPR, PA in combination with fertilizers and on different soil types. There were 54 treatment combinations including the control with three replications under complete randomized design. Plant growth parameters were evaluated using standard procedures during tillering and heading stages. Rice yield and some soil chemical properties were determined at harvest. Results showed that inoculation of Bacillus licheniformis and Fusarium fujikuroi enhanced plant growth by increasing the plant height which could be ascribe to its ability to promote IAA and GA production in plants. Inoculation of Rhizobium phaseoli enhanced chlorophyll content indicative to its ability to improve the N nutrition. However, these plant growth benefits during the vegetative stage were override by the fertilizer application effect especially during the maturity stage and grain yield. High fertilization rates on coarse-textured soil without nutrient loss resulted to high available nutrients and consequently high yield. Wood vinegar application however improved nutrient availability in soil which could be beneficial for improving soil quality. Further evaluation is necessary to fully assess the potential benefits that could be derived from inoculation of these organisms and wood vinegar application in different soil environment especially under different field conditions.

양액재배용 평연화 왕겨 배지의 근권 pH 안정화 (Stabilization of Rhizosphere pH during Tomato Cultivation Using Expanded Rice Hull Substrate)

  • 임상현;김경희;전신재;유근창
    • 생물환경조절학회지
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    • 제10권2호
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    • pp.95-100
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    • 2001
  • 본 연구에서는 팽연화왕겨를 이용한 토마토 양액재배시 높은 근권 pH를 적정 수준으로 유지학 위해 공급배양액의 pH를 낮추는 방안과 배지 내에 pH 3.0∼4.0 수준의 sphagnum peatmoss를 혼합하는 두 가지 방법을 시도하였다. 급액 pH를 낮추는 방법은 근권 pH의 경시적 변화가 매우 커서 뿌리에 장해가 있는 것으로 판단되며, 유의성은 없으나 수량이 약간 감소하는 경향을 보였다. Spagnunm peatmoss를 혼합하는 방법은 10%(v/v) 혼합처리에서 안정적인 pH 수준이 생육 전기간에 걸쳐 유지되었으며 수분 특성 개선 등의 부수적인 효과가 있어 유의성 있는 증수 효과를 보여 팽연화왕결르 이용한 양액재배시 높은 근권 pH의 문제는 sphagnum peatmoss를 10%(v/v) 혼합하는 처리로 해결할 수 있을 것으로 판단되었다.

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퇴적물에서 금속 이온 거동에 미치는 습지 식물의 영향에 관한 모델 연구 (A Modeling Approach: Effects of Wetland Plants on the Fate of Metal Species in the Sediments)

  • 최정현
    • 한국물환경학회지
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    • 제24권5호
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    • pp.603-610
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    • 2008
  • A mathematical model was developed to understand how the presence of plants affects vertical profiles of electron acceptors, their reduced species, and trace metals in the wetland sediments. The model accounted for biodegradation of organic matter utilizing sequential electron acceptors and subsequent chemical reactions using stoichiometric relationship. These biogeochemical reactions were affected by the combined effects of oxygen release and evapotranspiration driven by wetland plants. The measured data showed that $SO_4{^{2-}}$ concentrations increased at the beginning of the growing season and then gradually decreased. Based on the measured data, it was hypothesized that the limitation of the solid phase sulfide in direct contact with the roots may result in the gradual decrease of $SO_4{^{2-}}$ concentrations. With the dynamic formulation for the limitation of the solid phase sulfide, model simulated time variable sulfate profiles using published model parameters. Oxygen release from roots produced divalent metal species (i.e. $Cd^{2+}$) as well as oxidized sulfur species (i.e. $SO_4{^{2-}}$) in the sediment pore water. Evapotranspiration-induced advection increased flux of divalent metal species from the overlying water column into the rhizosphere. The increased divalent metal species were converted to the metal sulfide with sufficient FeS around the rhizosphere, which contributed to the decrease of bioavailability and toxicity of divalent metal activity in the pore water. Since the divalent metal activity is a good predictor of the metal bioavailability, this model with a proper simulation of solid phase sulfide plays an essential role to predict the dynamics of trace metals in the wetland sediments.

Bt 벼의 토양미생물상 영향 비교평가 (Assessment of Microbial Community in Paddy Soils Cultivated with Bt and Nakdong Rice)

  • 손수인;안병옥;지희연;조병관;조민석;신공식
    • 한국토양비료학회지
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    • 제45권5호
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    • pp.829-835
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    • 2012
  • 경제적 및 농업적 장점은 유전자 변형 작물 재배면적의 증가를 가져왔다. 그러나 유전자 변형 작물의 상업적 재배전에 유전자 변형 작물의 인간건강 및 환경에 미칠 잠재적 위해성에 대한 면밀한 검토가 필수적이다. 본 연구에서는 Bt벼의 토양미생물 군집에 미치는 영향을 조사하였다. 토양화학성분을 분석한 결과, Bt벼와 낙동벼 근권토양 간 화학성분의 유의성 있는 차이는 없는 것으로 조사되었다. 재배전, 재배초기, 최고분얼기의 토양미생물 군집밀도를 조사했을 때 Bt벼 근권토양의 세균, 방선균, 진균 군집밀도는 낙동벼와 유사한 수준으로 나타났다. 시기별 DGGE 분석결과 Bt 벼 근권토양 전체미생물상은 낙동벼와 차이가 없는 것으로 조사되었다. Pyrosequencing을 통한 Bt벼와 낙동벼의 미생물 군집조성을 조사한 결과 주요 미생물상 분포에 있어서도 매우 유사한 양상을 나타내었다. 위의 결과들을 종합해볼때 Bt 재배에 따른 토양미생물상에 미치는 영향은 미미한 것으로 사료된다. 수확 후 벼 잔존물이 토양환경에 미치는 영향에 대해서는 좀 더 연구가 진행되어야 할 것이다.

Promoted Growth of Maize by the Phosphate Solubilizing Bacteria Isolated from North-east China

  • Wu, Hai-Yan;Wang, Li-Chun;Gao, Xing-Ai;Jin, Rong-De;Fan, Zuo-Wei;Kim, Kil-Yong;Zhao, Lan-Po
    • 한국토양비료학회지
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    • 제44권1호
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    • pp.112-117
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    • 2011
  • A strain of phosphate solubilizing bacterium was isolated from rhizosphere and identified as Burkholderia sp. by 16S-rRNA gene sequence analyses. The bacterium was found to release gluconic acid and the solubilization of hydroxyapatite in the liquid medium by a significant drop in pH to 3.7 from an initial pH 7.0. The soluble-P concentration continuously increased during the incubation periods and the total amount of soluble P released in culture filtrate was detected at 990 mg $L^{-1}$ after 10 days of inoculation. Most promoted maize growth was found in the standard NPK (240-120-120 kg $ha^{-1}$) soil inoculation with Burkholderia sp. (Twenty milliliters/plant, 106 CFU) and also in the absence of Burkholderia sp. inoculation, the soil amended with only 2/3 levels of P gave significant higher plant yield compared to 1/3 levels of P or without P supplementation.

Biocontrol Potential of Streptomyces griseus H7602 Against Root Rot Disease (Phytophthora capsici) in Pepper

  • Nguyen, Xuan-Hoa;Naing, Kyaw-Wai;Lee, Young-Seong;Tindwa, Hamisi;Lee, Geon-Hyoung;Jeong, Byoung-Kon;Ro, Hee-Myeong;Kim, Sang-Jun;Jung, Woo-Jin;Kim, Kil-Yong
    • The Plant Pathology Journal
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    • 제28권3호
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    • pp.282-289
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    • 2012
  • The root rot of pepper (Capsicum annuum L.) caused by Phytophthora capsici is one of the most important diseases affecting this crop worldwide. This work presents the evaluation of the capacity of Streptomyces griseus H7602 to protect pepper plants against Phytophthora capsici and establishes its role as a biocontrol agent. In this study, we isolated an actinomycete strain H7602 from rhizosphere soil, identified it as Streptomyces griseus by 16S rRNA analysis and demonstrated its antifungal activity against various plant pathogens including P. capsici. H7602 produced lytic emzymes such as chitinase, ${\beta}$-1,3-glucanase, lipase and protease. In addition, crude extract from H7602 also exhibited destructive activity toward P. capsici hyphae. In the pot trial, results showed the protective effect of H7602 against pepper from P. capsici. Application of H7602 culture suspension reduced 47.35% of root mortality and enhanced growth of pepper plants for 56.37% in fresh root and 17.56% g in fresh shoot as compared to control, resulting in greater protection to pepper plants against P. capsici infestation. Additionally, the enzymatic activities, chitinase and ${\beta}$-1,3-glucanase, were higher in rhizosphere soil and roots of pepper plants treated with H7602 than other treated plants. Therefore, our results indicated a clear potential of S. griseus H7602 to be used for biocontrol of root rot disease caused by P. capsici in pepper.

작물 근권부 생장 환경 Data 수집 시스템 설계에 관한 연구 (A Study on the Design of Data Collection System for Growing Environment of Crops)

  • 이기영;정진형;김수환;임창목;이상식
    • 한국정보전자통신기술학회논문지
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    • 제11권6호
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    • pp.764-771
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    • 2018
  • 요즘 국내 외 농업 환경은 농업 인구의 고령화, 귀농 인구의 증가, 급격한 기후 변화, 농식품 유통 구조의 다양화, 수자원의 고갈 및 한정된 경작지 등 다양한 변화 속에 놓여 있다. 최근 농업을 둘러싼 다양한 환경 변화에 대응하기 위해 재배 전반의 작업이력인 작물 생육정보, 생육환경 및 농작업 일지 등과 같은 사항들을 쉽게 기록, 저장 및 관리하여 작물 생산량과 작업 효율을 높이기 위한 스마트 온실 실용화에 대한 관심이 증가하고 있다. 본 논문은 작물의 근권부에서 측정할 수 있는 생장환경 데이터인 온도, 습도, 일사량. CO2 농도 등과 같은 생육에 필요한 상황정보를 수집하고 수집된 데이터를 모니터링 할 수 있는 시스템을 제안한다. 생장 작물의 근권 측정부에서 측정된 데이터와 센서로 측정된 생장환경 데이터인 온도, 습도, 일사량 등의 데이터를 취합하여 400MHz의 무선 통신 게이트웨이에 전송하는 시스템을 개발하였다. 전송된 데이터를 Cloud 기반으로 근권 환경 데이터를 모니터링 및 데이터를 시각화 할 수 있는 통합 SW 개발을 진행하였다. 데이터의 시각화를 위한 그래프 형식과 데이터 형식으로 모니터링을 할 수 있도록 하였다. 기존 스마트팜은 농장내의 데이터만을 이용하여 작물 및 시설관리를 하고, 본 연구는 전국의 농장의 날씨 및 생장환경을 수집 및 분석하여 가장 효율적인 생장환경을 제시한다.

Isolation and Detection of Genes Responsible for Pyoverdines Biosynthesis in Pseudomonas putida KNUK9

  • Hussein, Khalid A.;Joo, Jin Ho
    • 한국토양비료학회지
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    • 제48권2호
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    • pp.119-124
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    • 2015
  • Pyoverdines (PVDs) are organic compounds produced by the fluorescent Pseudomonads under iron starvation conditions. Among the isolated rhizosphere pseudomonads strains, P. putida KNUK9 showed the highest production of PVDs and its production reached to 62.81% siderophores units. DNA isolation, ligation, PCR amplification, and transformation using E. coli $DH5{\alpha}$ cells were carried out for preparing the strong pyoverdine producer strains. We detected seven genes playing the fundamental roles in the pyoverdine metabolism in Pseudomonads. According to data and analysis obtained from the study, we deduced that the strain P. putida KNUK9 contains the essential genes required for pyoverdine biosynthesis.