• Korean Journal of Fisheries and Aquatic Sciences
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• v.44 no.6
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• pp.717-731
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• 2011

To clarify relationships between the abundance and biological characteristics of Pacific salmon Oncorhynchus spp., we analyzed spatiotemporal changes in fork length, body weight, and an index of relative abundance (catch per unit effort, CPUE) for pink salmon (O. gorbuscha), chum salmon (O. keta), and sockeye salmon (O. nerka) collected by research gill-nets from the T/V Oshoro-maru and the T/V Hokusei-maru of Hokkaido University in the North Pacific during 1953-2007. Populations of each species were distributed throughout the western Bering Sea, eastern Bering Sea (EB), western North Pacific (WNP), central North Pacific (CNP), eastern North Pacific (ENP), and Okhotsk Sea. Since 1970, the average body size of chum salmon at ocean ages 0.3-0.4 has generally declined in the WNP and CNP. However, the average body sizes of sockeye and pink salmon have not shown temporal changes. Chum salmon showed significant negative (positive) correlations between CPUE and body size for populations in CNP (ENP) at ocean ages 0.2-0.3 (age 0.1) for both sexes. In general, sockeye salmon also showed significant negative (positive) correlations between CPUE and body size for populations in the EB at ocean ages X.2-X.3 (age X.1) for both sexes, except in CNP at age 2. Our results suggest that better growth by chum and sockeye salmon in the early periods of their ocean life histories might produce higher abundance. This higher abundance, which might also be affected by overlapping distributions among Pacific salmon species and populations in certain seas, in turn appears to cause density-dependent declines in growth in the following ocean life history period due to the limited carrying capacity of the seas. To understand complex dynamics in Pacific salmon species in the North Pacific Ocean, research on interactions among species and populations is needed.

• Asian-Australasian Journal of Animal Sciences
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• v.31 no.9
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• pp.1464-1473
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• 2018

Objective: To describe in-depth sequencing, the bacterial community diversity and its succession during ensiling of whole-plant maize and subsequent exposure to air. Methods: The microbial community dynamics of fermented whole-plant maize for 60 days (sampled on day 5, 10, 20, 40, 60) and subsequent aerobic exposure (sampled on day 63 after exposure to air for 3 days) were explored using Illumina Miseq sequence platform. Results: A total of 227,220 effective reads were obtained. At the genus level, there were 12 genera with relative abundance >1%, Lactobacillus, Klebsiella, Sporolactobacillus, Norank-c-cyanobacteria, Pantoea, Pediococcus, Rahnella, Sphingomonas, Serratia, Chryseobacterium, Sphingobacterium, and Lactococcus. Lactobacillus consistently dominated the bacterial communities with relative abundance from 49.56% to 64.17% during the ensiling process. Klebsiella was also an important succession bacterium with a decrease tendency from 15.20% to 6.41% during the ensiling process. The genus Sporolactobacillus appeared in late-ensiling stages with 7.70% abundance on day 40 and 5.32% on day 60. After aerobic exposure, the Lactobacillus decreased its abundance from 63.2% on day 60 to 45.03% on d 63, and Klebsiella from 5.51% to 5.64%, while Sporolactobacillus greatly increased its abundance to 28.15%. These bacterial genera belong to 5 phyla: Firmicutes (relative abundance: 56.38% to 78.43%) was dominant, others were Proteobacteria, Bacteroidetes, Cyanobacteria, and Actinobacteria. The bacterial communities clearly clustered into early-ensiling (d 5), medium-ensiling (d 10, d 20), late-ensiling (d 40, d 60), and aerobic exposure (d 63) clusters, with early- and late-ensiling communities more like each other than to the aerobic exposure communities. Conclusion: High-throughput sequencing based on 16S rRNA genes proved to be a useful method to explore bacterial communities of silage. The results indicated that the bacterial communities varied during fermentation and more dramatically during aerobic exposure. The study is valuable for understanding the mechanism of population change and the relationship between bacteria and ensilage characteristics.

• The Korean Journal of Malacology
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• v.20 no.1
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• pp.27-34
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• 2004

Based on both field and laboratory experiments, seasonal changes in the species composition and abundance of phytoplankton in the gut contents of the jedo venus clam, Protothaca jedoensis, and its feeding selectivity were investigated. The phytoplankton in the gut contents comprised Bacillariophyceae (diatom), Chlorophyceae, Chrysophyceae, and Dinophyceae, of which the diatoms being the most predominant throughout the year. Although the number of species and the abundance of phytoplankton in the sea water were always more diverse and more abundant than in the gut contents, the relative number and abundance were generally similar in the seawater and in the gut contents. In the laboratory experiments, the relative abundances of Coscinodiscus marginatus and Thalassirosira eccentrica were much more higher in the gut contents than any other algal species, while Paralia sulcata, Skeletonema costatum, and Eucampia zodiacus were abundant in order of cell density in the ambient water. These results suggest that P. jedoensis may feed preferably on single algal cell or smaller chains of algal cells.

• Journal of Microbiology and Biotechnology
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• v.32 no.10
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• pp.1275-1283
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• 2022

Understanding soil microbial community structure in the Arctic is essential for predicting the impact of climate change on interactions between organisms living in polar environments. The hypothesis of the present study was that soil microbial communities and soil chemical characteristics would vary depending on their associated plant species and local environments in Arctic mature soils. We analyzed soil bacterial communities and soil chemical characteristics from soil without vegetation (bare soil) and rhizosphere soil of three Arctic plants (Cassiope tetragona [L.] D. Don, Dryas octopetala L. and Silene acaulis [L.] Jacq.) in different local environments (coal-mined site and seashore-adjacent site). We did not observe any clear differences in microbial community structure in samples belonging to different plant rhizospheres; however, samples from different environmental sites had distinct microbial community structure. The samples from coal-mined site had a relatively higher abundance of Bacteroidetes and Firmicutes. On the other hand, Acidobacteria was more prevalent in seashore-adjacent samples. The relative abundance of Proteobacteria and Acidobacteria decreased toward higher soil pH, whereas that of Bacteroidetes and Firmicutes was positively correlated with soil pH. Our results suggest that soil bacterial community dissimilarity can be driven by spatial heterogeneity in deglaciated mature soil. Furthermore, these results indicate that soil microbial composition and relative abundance are more affected by soil pH, an abiotic factor, than plant species, a biotic factor.

• Journal of Ecology and Environment
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• v.43 no.1
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• pp.73-83
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• 2019

Background: Habitat selectivity and ecology of freshwater fishes were studied in two selected streams and their junction point which consist a total of 39 microhabitats. The aims of this study were to describe the habitat preference and its availability to fish assemblage, as well as ecology, habitat use, and habitat characteristics. Methods: We collected fish with backpack electrofishing three times during August 2013, December 2013, and March 2014. Using a variation partitioning approach of R software, we studied the relationship of fish abundances with stream type, habitat type, and abundance of key macroinvertebrate taxa. Results: A total of 6554 fishes representing four species belonging to the family Cyprinidae were caught. A higher total fish abundance was recorded from Gereb Tsedo (4870; 74.3%) than from Elala stream (1684; 25.7%). Taking both streams together, the overall total relative fish abundance was significantly higher in pools (53%) than in runs (35%) and in riffles (12%) at P < 0.05. Species-wise comparisons showed that 71%, 15%, 13%, and 1% of the pool fish community were occupied by Garra blanfordii, Garra ignestii, Garra dembecha, and Garra aethiopica, respectively. Stream type, habitat type, and key macroinvertebrate taxa each explained a significant proportion of the variation in fish abundance. Based on the variation partitioning approach, fish abundance was higher in Gereb Tsedo stream (P < 0.01). Moreover, fish abundance increased with pool habitat type (P < 0.01) and with availability of key macroinvertebrate taxa (P < 0.01). Conclusion: Fish abundance differed between stream types, among habitats and among key macroinvertebrate taxa availability. Among the factors, habitat type was the most important driving factor behind variation among fish abundances, and pool supports the highest fish abundance.

• Journal of Astronomy and Space Sciences
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• v.7 no.1
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• pp.47-55
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• 1990

From the study of a spectroscopic plate of $\varepsilon$ Auriage, we can measure the radial velocity and the relative abundance for this eclipsing binary. Calculated radial velocity is -37Km/s and the abundance of [Fe] is estimated as -1.5.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.36 no.6
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• pp.632-640
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• 2003

Geographic variation in shell morphology of Thais clavigera $(K\"{u}ster)$ (Gastropoda: Muricidae) was investigated using samples collected from 24 sites along the Korean coast. Multivariate statistical analysis was applied to 9 morphometric and 4 categorical variables. The shells of T. clavigera were classified into two distinct morph types (Type-W and -E). Temperature and salinity of the sampling sites were significantly correlated with the incidence of morph types. Relative abundance of Type-W (thin, yellowish brown shell with triangular nodules) was positively correlated with temperature and negatively correlated with salinity. In contrast, relative abundance of Type-E (thick, dark purple shell with round nodules) was negatively correlated with temperature and positively correlated with salinity. Possible correlation between environmental factors (temperature and salinity) and morphological variations in the shells were discussed.

• The Korean Journal of Mycology
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• v.51 no.4
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• pp.419-428
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• 2023

Several endophytic fungal strains were isolated from Taxus cuspidata and identified by molecular analysis of the internal transcribed spacer and RNA polymerase II second largest subunit. This study aimed to determine the relative abundance and compare the species diversity of endophytic fungal communities within needle leaves and twigs. We identified a total of 49 endophytic fungal species. Notably, two species, Trichoderma dingleyae and Xylaria cubensis, were discovered to be previously unrecorded in Korea. The fungal communities in both plant tissues demonstrated distinct species composition. Differences were observed in the relative abundance and species diversity index between needle leaves and twigs. Our findings suggest that the host plant tissues influence the species diversity of endophytic fungal communities.

• Journal of Microbiology and Biotechnology
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• v.26 no.12
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• pp.2148-2158
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• 2016

To investigate the effects of Lactobacillus curvatus and Leuconostoc mesenteroides on suan cai (pickled Chinese cabbage) fermentation, L. curvatus and/or Ln. mesenteroides were inoculated into suan cai. Physicochemical indexes were measured, and the microbial dynamics during the fermentation were analyzed by Illumina MiSeq sequencing and quantitative polymerase chain reaction (qPCR). The results showed that inoculation with lactic acid bacteria (LAB) lowered the pH of the fermentation system more rapidly. The decrease in water-soluble carbohydrates in the inoculated treatments occurred more rapidly than in the control. The LAB counts in the control were lower than in other inoculated treatments during the first 12 days of fermentation. According to the Illumina MiSeq sequencing analyses, Firmicutes, Proteobacteria, Bacteroidetes, Actinobacteria, Cyanobacteria, Fusobacteria, and Verrucomicrobia were present in the fermentations, along with other unclassified bacteria. Generally, Firmicutes was predominant during the fermentation in all treatments. At the genus level, 16 genera were detected. The relative abundance of Lactobacillus in all inoculated treatments was higher than in the control. The relative abundance of Lactobacillus in the treatments containing L. curvatus was higher than in the Ln. mesenteroides-only treatment. The relative abundance of Leuconostoc in the Ln. mesenteroides-containing treatments increased continuously throughout the fermentation. Leuconostoc was highest in the Ln. mesenteroides-only treatment. According to the qPCR results, L. curvatus and/or Ln. mesenteroides inoculations could effectively inhabit the fermentation system. L. curvatus dominated the fermentation in the inoculated treatments.

• Mycobiology
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• v.49 no.4
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• pp.385-395
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• 2021

Fungal endophytes have been recorded in various plant species with a richness of diversity, and their presence plays an essential role in host plant protection against biotic and abiotic stresses. This study applied the Illumina MiSeq sequencing platform based on the amplification of fungal ribosomal ITS2 region to analyze fungal endophytic communities of two oak species (Quercus mongolica and Q. serrata) with different oak wilt disease susceptibilities in Korea. The results showed a total of 230,768 sequencing reads were obtained and clustered at a 97% similarity threshold into 709 operational taxonomic units (OTUs). The OTUs of Q. serrata were higher than that of Q. mongolica with the number of 617 OTUs and 512 OTUs, respectively. Shannon index also showed that Q. serrata had a significantly higher level of fungal diversity than Q. mongolica. Total of OTUs were assigned into 5 fungal phyla, 17 classes, 60 orders, 133 families, 195 genera, and 280 species. Ascomycota was the dominant phylum with 75.11% relative abundance, followed by Basidiomycota with 5.28%. Leptosillia, Aureobasidium and Acanthostigma were the most abundant genera detected in Q. serrata with the average relative abundance of 2.85, 2.76, and 2.19%, respectively. On the other hand, Peltaster, Cladosporium and Monochaetia were the most common genera detected in Q. mongolica with the average relative abundance of 4.83, 3.03, and 2.87%, respectively. Our results indicated that fungal endophytic communities were significantly different between two oak species and these differences could influence responses of host trees to oak wilt disease caused by Raffaelea quercus-mongolicae.